article :
Cottret L, Milreu P-V, Acuña V, Marchetti-Spaccamela A, Stougie L, Charles H, Sagot M-F (2010)
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts Baumannia cicadellinicola and Sulcia muelleri with Their Insect Host Homalodisca coagulata, PLos Computational Biology, vol. 6(9) pp.307-316
Acuña V, Marchetti-Spaccamela A, Sagot M-F, Stougie L (2009)
A Note on the Complexity of Finding and Enumerating Elementary Modes, BioSystems, vol. 99 pp.210-214
Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot M-F, Stougie L (2008)
Modes and Cuts in Metabolic Networks:Complexity and Algorithms, BioSystems, vol. 95 - n°1 pp.51-60
Acuña V, Didier G, Maass A (2006)
Coding with variable block maps, Theoretical Computer Science, vol. 369 pp.396-405
inproceedings :
Vieira-Milreu P, Acuña V, Birmelé E, Crescenzi P, Marchetti-Spaccamela A, Sagot M-F, Stougie L, Lacroix V (2010)
Enumerating Chemical Organisations in consistent metabolic networks: complexity and algorithms, WABI` 2010, Springer-Verlag Berlin, Lecture notes in computer science, vol. 6293 pp.226-237
Cottret L, Milreu P-V, Acuña V, Marchetti-Spaccamela A, Viduani-Martinez F, Sagot M-F, Stougie L (2008)
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network, WABI 2008, Springer-Verlag, Lecture Notes in Bioinformatics, vol. LNBI 5251 pp.233-244
phdthesis :
Acuña V (2010)
Models and algorithms for metabolic networks: elementary modes and precursor sets
