Artigas J, Arts G, Babut M, Caracciolo Barra A, Charles S, Chaumot A, Combourieu B, Dahllöf I, Despréaux D, Ferrari B, Friberg N, Garric J, Geffard O, Gourlay-Francé C, Hein M, Hjorth M, Krauss M, De Lange H J, Lahr J, Lehtonen K K, Lettieri T, Liess M, Lofts S, Mayer P, Morin S, Paschke A, Svendsen C, Usseglio-Platera P, Van den Brink N, Vindimian E, Williams R (2012)
Towards a renewed research agenda in ecotoxicology, Environmental Pollution, vol. 160 pp.201-206
Billoir E, Delhaye H, Forfait C, Clément B, Triffault-Bouchet G, Charles S, Delignette-Muller M-L (2012)
Comparison of bioassays with different exposure time patterns : The added value of dynamic modelling in predictive ecotoxicology, Ecotoxicology and Environmental Safety, vol. 75 pp.80-86
Forfait C, Charles S, Billoir E, Delignette-Muller M-L (2012)
Survival data analyses in ecotoxicology: critical effect concentrations methods and models. What should we use?, Ecotoxicology, vol. pp.532-540
Billoir E, Delhaye H, Clément B, Delignette-Muller M-L, Charles S (2011)
Bayesian modelling of daphnid responses to time-varying cadmium exposure in laboratory aquatic microcosms, Ecotoxicology and Environmental Safety, vol. 74 pp.380-388
Ciliberti A, Berny P, Delignette-Muller M-L, de Buffrénil V (2011)
The Nile monitor (Varanus niloticus; Squamata: Varanidae) as a sentinel species for lead and cadmium contamination in sub-Saharan wetlands, Science of the Total Environment, vol. 409 pp.4735-4745
Cornu M, Billoir E, Bergis H, Beaufort A, Zuliani V (2011)
Modeling microbial competition in food: Application to the behavior of Listeria monocytogenes and lactic acid flora in pork meat products, Food Microbiology, vol. 28 pp.639-647
Delignette-Muller M-L, Forfait C, Billoir E, Charles S (2011)
A NEW PERSPECTIVE ON THE DUNNETT PROCEDURE : FILLING THE GAP BETWEEN NOEC/LOEC AND ECx CONCEPTS, Environmental Toxicology and Chemistry, vol. 30 pp.2888-2891
Fox DR, Billoir E (2011)
Individual versus population effects in concentration-response modeling, Integrated Environmental Assessment and Management, vol. 7 pp.501-502
Jaloustre S, Cornu M, Morelli E, Noël C, Delignette-Muller M-L (2011)
Bayesian modeling of Clostridium perfringens growth in beef-in-sauce products, Food Microbiology, vol. 28 pp.311-320
Kielbassa J, Charles S, Delignette-Muller M-L (2011)
The importance of incorporating age and sex when backcalculating length in bullhead Cottus gobio, Journal of Fish Biology, vol. 78 pp.1492-1507
Kribs-Zaleta CM, Jusot JF, Vanhems P, Charles S (2011)
Modeling Nosocomial Transmission of Rotavirus in Pediatric Wards, Bulletin of Mathematical Biology, vol. 73 pp.1413-1442
Van Oudenhove L, Billoir E, Boulay R, Bernstein C, Cerda X (2011)
Temperature limits trail following behaviour through pheromone decay in ants, Naturwissenschaften, vol. 98 pp.1009-1017
Billoir E, Denis J-B, Commeau N, Cornu M, Zuliani V (2010)
Probabilistic Modeling of the Fate of Listeria Monocytogenes in Diced Bacon During the Manufacturing Process, Risk Analysis, vol. 31(2) pp.237-254
Ducrot V, Billoir E, Péry A-RR, Garric J, Charles S (2010)
From Individual to Population Level Effects of Toxicants in the Tubicifid Branchiura sowerbyi Using Threshold Effect Models in a Bayesian Framework, Environmental Science & Technology, vol. 44(9) pp.3566-3571
Ducrot V, Teixeira-Alves M, Lopes C, Delignette-Muller M-L, Charles S, Lagadic L (2010)
Development of partial life-cycle experiments to assess the effects of endocrine disruptors on the freshwater gastropod Lymnaea stagnalis: a case-study with vinclozolin, Ecotoxicology, vol. 19(7) pp.1312-1321
Kielbassa J, Delignette-Muller M-L, Pont D, Charles S (2010)
Application of a temperature-dependent von Bertalanffy growth model to bullhead Cottus gobio, Ecological Modelling, vol. 221 pp.2475-2481
Lévêque C, Mounolou JC, Pavé A, Schmidt-Lainé C (2010)
A propos des introductions d`espèces, Etudes Rurales, vol. 185 pp.219-234
Pouillot R, Delignette-Muller M-L (2010) Evaluating variability and uncertainty separately in microbial quantitative risk assessment using two R packages,
International Journal of Food Microbiology,
vol. 142 pp.330-340
Billoir E, da Silva Ferrão-Filho A, Delignette-Muller M-L, Charles S (2009) DEBtox theory and matrix population models as helpful tools in understanding the interaction between toxic cyanobacteria and zooplankton,
Journal of Theoretical Biology,
vol. 258 pp.380-388
Charles S, Billoir E, Lopes C, Chaumot A (2009) Matrix Population Models as Relevant Modeling Tools in Ecotoxicology,
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vol. 2 pp.261-298
Lopes C, Charles S, Vollat B, Garric J (2009) Toxicity of ivermectin on cladocerans: comparison of toxic effects on daphnia and ceriodaphnia species,
Environmental Toxicology and Chemistry,
vol. 28(10) pp.2160-2166
Macedo-Rouet M, Ney M, Charles S, Lallich-Boidin G (2009) Students performance and satisfaction with Web vs. paper-based practice quizzes and lecture notes,
Computers & Education,
vol. 53 pp.375-384
Montet M-P, Christieans S, Thevenot D, Coppet V, Ganet S, Delignette-Muller M-L, Dunière L, Miszczycha S, Vernozy-Rozand C (2009) Fate of acid-resistant and non-acid resistant Shiga toxin-producing Escherichia coli strains in experimentally contaminated French fermented raw meat sausages,
International Journal of Food Microbiology,
vol. 129(3) pp.264-270
Pouillot R, Goulet V, Delignette-Muller M-L, Mahé A, Cornu M (2009) Quantitative Risk Assessment of Listeria monocytogenes in French Cold-Smoked Salmon: II. Risk Characterization,
Risk Analysis,
vol. 29(6) pp.806-819
Billoir E (2008) Modélisation dynamique et inférence bayésienne pour l`analyse de données en écotoxicologie, , 2008
Billoir E, Delignette-Muller M-L, Péry A-RR, Charles S (2008) A Bayesian Approach to Analyzing Ecotoxicological Data,
Environmental Science & Technology,
vol. 42(23) pp.8978-8984
Billoir E, Delignette-Muller M-L, Péry A-RR, Geffard O, Charles S (2008) Statistical cautions when estimating DEBtox parameters,
Journal of Theoretical Biology,
vol. 254 pp.55-64
Charles S, Subtil F, Kielbassa J, Pont D (2008) An individual-based model to describe a bullhead population dynamics including temperature variations,
Ecological Modelling,
vol. 215 pp.377-392
Delignette-Muller M-L, Cornu M (2008) Quantitative risk assessment for Escherichia coli O157:H7 in frozen ground beef patties consumed by young children in French households,
International Journal of Food Microbiology,
vol. 128(1) pp.77-84
Fremaux B, Prigent-Combaret C, Delignette-Muller M-L, Mallen B, Dothal M, Gleizal A, Vernozy-Rozand C (2008) Persistence of Shiga toxin-producing Escherichia coli O26 in various manure-amended soil types,
Journal of Applied Microbiology,
vol. 104 pp.296-304
Schmidt-Lainé C, Pavé A (2008) La modélisation au coeur de la démarche scientifique et à la confluence des disciplines,
Les Cahiers du musée des Confluences,
vol. pp.21-34
Vautrin E, Genieys S, Charles S, Vavre F (2008) Do vertically transmitted symbionts co-existing in a single host compete or cooperate? A modelling approach,
Journal of Evolutionary Biology,
vol. 21 pp.145-161
Billoir E, Péry ARR, Charles S (2007) Integrating the lethal and sublethal effects of toxic compounds into the population dynamics of Daphnia magna : A combinaison of the DEBtox and matrix population models,
Ecological Modelling,
vol. 203 pp.207-214
Ducrot V, Péry ARR, Mons R, Charles S, Garric J (2007) Dynamic engergy budgets as a basis to model population-level effects of zinc-spiked sediments in the gastropod Valvata piscinalis,
Environmental Toxicology and Chemistry,
vol. 26 pp.1774-1783
Fremaux B, Prigent-Combaret C, Delignette-Muller M-L, Dothal M, Vernozy-Rozand C (2007) Persistence of Shiga toxin-producing Escherichia coli O26 in cow slurry,
Letters in applied microbiology,
vol. 45 pp.55-61
Pavé A (2007) "Eau et territoires: quelles priorités pour la recherche ?",
Natures Sciences Sociétés,
vol. 15 pp.424-426
Pavé A (2007) Necessity of chance: biological roulettes and biodiversity,
Comptes rendus biologies,
vol. 330(3) pp.189-198
Pouillot R, Miconnet N, Afchain A-L, Delignette-Muller M-L, Beaufort A, Rosso L, Denis J-B, Cornu M (2007) Quantitative Risk Assessment of Listeria monocytogenes in French Cold-Smoked Salmon: I. Quantitative Exposure Assessment,
Risk Analysis,
vol. 27 pp.806-819
Vautrin E, Charles S, Genieys S, Vavre F (2007) Evolution and invasion dynamics of multiple infections with Wolbachia investigated using matrix based models.,
Journal of Theoretical Biology,
vol. 245 pp.197-209
Vimont A, Delignette-Muller M-L, Vernozy-Rozand C (2007) Supplementation of enrichment broths by novobiocin for detecting Shiga toxin-producing Escherichia coli from food: a controversial use,
Letters in applied microbiology,
vol. 44 pp.326-331
Vimont A, Vernozy-Rozand C, Montet M-P, Bavai C, Fremaux B, Delignette-Muller M-L (2007) Growth of Shiga-Toxin producing Escherichia coli (STEC) and bovine feces background microflora in various enrichment protocols,
Veterinary Microbiology,
vol. 123 pp.274-281
Charles S, Mallet J -P, Persat H (2006) Population dynamics of grayling: Modelling temperature and discharge effects,
Mathematical Modelling of Natural Phenomena,
vol. 1 pp.33-48
Chaumot A, Milioni N, Abdoli A, Pont D, Charles S (2006) First step of a modeling approach to evalue spatial heterogeneity in fish (Cottus gobio) population dynamics,
Ecological Modelling,
vol. 197 pp.263-273
Cornu M, Beaufort A, Rudelle S, Laloux L, Bergis H, Miconnet N, Serot T, Delignette-Muller M-L (2006) Effect of temperature water-phase salt and phenolic contents on Listeria monocytogenes growth rates on cold-smoked salmon and evaluation of secondary models,
International Journal of Food Microbiology,
vol. 106 pp.159-168
Deceliere G, Letrillard Y, Charles S, Biémont C (2006) TESD : a transposable element dynamics simulation environment,
Bioinformatics,
vol. 22 pp.2702-2703
Delignette-Muller M-L, Cornu M, Pouillot R, Denis J-B (2006) Use of Bayesian modelling in risk assessment: Application to growth of Listeria monocytogenes and food flora in cold-smoked salmon,
International journal of food microbiology,
vol. 106 pp.195-208
Fremaux B, Delignette-Muller M-L, Prigent-Combaret C, Gleizal A, Vernozy-Rozand C (2006) Growth and survival of non-O157:H7 Shiga-toxin-producing Escherichia coli in cow manure,
Journal of Applied Microbiology,
vol. 102 pp.89-99
Macedo-Rouet M, Charles S, Ney M, Batier C, Humblot L, Marquez E, Lallich-Boidin G (2006) Un dispositif Web pour l`enseignement des mathématiques à l`université - quels impacts sur la performance et la motivation des étudiants ?,
Sciences et Technologies de l`Information et de la Communication pour l`Education et la Formation,
vol. 13 pp.1-7
Pavé A (2006) By way of introduction: Modelling living systems their diversity and their complexity: some methodological and theoretical problems,
Comptes rendus biologies,
vol. 329(1) pp.3-12
Thévenot D, Delignette-Muller M-L, Christieans S, Leroy S, Kodjo A, Vernozy-Rozand C (2006) Serological and molecular ecology of Listeria monocytogenes isolates collected from 13 French pork meat salting–curing plants and their products,
International Journal of Food Microbiology,
vol. 112 pp.341-342
Vimont A, Vernozy-Rozand C, Delignette-Muller M-L (2006) Isolation of E. coli O157:H7 and non-O157 STEC in different matrices: review of the most commonly used enrichment protocols,
Letters in Applied Microbiology,
vol. 42 pp.102-108
Vimont A, Vernozy-Rozand C, Montet M-P, Lazizzera C, Bavai C, Delignette-Muller M-L (2006) Modeling and Predicting the Simultaneous Growth of Escherichia coli O157:H7 and Ground Beef Background Microflora for Various Enrichment Protocols,
Applied and environmental microbiology,
vol. 72 pp.261-268
Décelière G, Charles S, Biémont C (2005) The Dynamics of Transposable Elements in Structured Populations,
Genetics,
vol. 169 pp.467-474
Delignette-Muller M-L, Baty F, Cornu M, Bergis H (2005) Modelling the effect of a temperature shift on the lag phase duration of Listeria monocytogenes,
International Journal of Food Microbiology,
vol. 100 pp.77-84
Lamy B, Carret G, Flandrois J-P, Delignette-Muller M-L (2005) De la prévalence aux valeurs prédictives: L`antibiogramme face à l`évolution de la résistance aux antibiotiques,
Annales de Biologie Clinique (Paris),
vol. 63 pp.493-502
Lopes C, Péry ARR, Chaumot A, Charles S (2005) Ecotoxicology and Population Dynamics: on the use of DEBtox models in a Leslie modeling approach,
Ecological Modelling,
vol. 188 pp.30-40
Pavé A (2005) La modélisation et la simulation des objets et processus complexes. Questions scientifiques méthodologiques et éthiques,
Natures Sciences Sociétés,
vol. 13 pp.169-171
Pavé A (2005) Les moyens lourds de la recherche : un exemple de "développement durable" pour la science,
La revue pour l`histoire du CNRS,
vol. 12 pp.1-9
Pavé A (2005) A propos de la conférence internationale "Biodiversité science et gouvernance": le point de vue d`un biométricien,
Natures Sciences Sociétés,
vol. 13 pp.440-446
Thévenot D, Delignette-Muller M-L, Christieans S, Vernozy-Rozand C (2005) Prevalence of Listeria monocytogenes in 13 dried sausage processing plants and their products,
International Journal of Food Microbiology,
vol. 102 pp.85-94
Thévenot D, Delignette-Muller M-L, Christieansa S, Vernozy-Rozand C (2005) Fate of Listeria monocytogenes in experimentally contaminated French sausages,
International Journal of Food Microbiology,
vol. 101 pp.189-200
Batya F, Delignette-Muller M-L (2004) Estimating the bacterial lag time: which model which precision ?,
International Journal of Food Microbiology,
vol. 91 pp.261-277
Charles S (2004) " Mathématiques et Informatique du Vivant " : une formation interdisciplinaire qui voit le jour grâce au LMD,
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Charles S, Ferreol M, Chaumot A, Pery ARR (2004) Food availability effect on population dynamics of the midge Chironomus riparius: a Leslie modeling approach,
Ecological Modelling,
vol. 175 pp.217-229
Charles-Bajard S (2004) HDR - Les modèles matriciels de type Leslie : Une approche couplée Mathématiques et Statistiques, , 2004
Lamy B, Carret G, Flandrois J-P, Delignette-Muller M-L (2004) How does susceptibility prevalence impact on the performance of disk diffusion susceptibility testing?,
Diagnostic Microbiology and Infectious Disease,
vol. 49 pp.131-139
Lamy B, Delignette-Muller M-L, Baty F, Carret G (2004) Simple table for estimating confidence interval of discrepancy frequencies in microbiological safety evaluation,
Journal of Microbiological Methods,
vol. 56 pp.137-139
Ney M, Nifle R, Charles S, Macedo-Rouet M, Humblot L, Batier C (2004) Approche méthodologique pour faire évoluer la pédagogie en TD vers un apprentissage actif soutenu par des TICE,
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Pavé A, Schmidt-Lainé C (2004) Integrative Biology: Modelling and Simulation of the Complexity of Natural Systems,
Biology International,
vol. 44 pp.13-24
Charles S, Ney M, Mouchiroud D, Humblot L, Batier C (2003) Un site web pour l`enseignement interdisciplinaire des Mathématiques en Biologie,
EIAH (Environnement Informatique d`Apprentissage Humain),
vol. pp.445-452
Charles-Bajard S, Flandrois J-P, Tomassone R (2003) Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes,
Revue de Statistique Appliquée,
vol. LI pp.59-71
Chaumot A, Charles S, Flammarion P, Auger P (2003) Do migratory or demographic disruptions rule the population impact of pollution in spatial networks?,
Theoretical Population Biology,
vol. 64 pp.473-480
Chaumot A, Charles S, Flammarion P, Auger P (2003) Ecotoxicology and spatial modeling in population dynamics: an illustration with brown trout,
Environmental Toxicology and Chemistry,
vol. 22 pp.958-969
Ney M, Charles S (2003) Les étudiants en première année à l`Université des Sciences : innover pour motiver,
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vol. pp.157-165
Baty F, Flandrois J-P, Delignette-Muller M-L (2002) Modeling the Lag Time of Listeria monocytogenes from Viable Count Enumeration and Optical Density Data,
Applied and environmental microbiology,
vol. 68 pp.5816-5825
Charles S, Morand S, Chassé J-L, Auger P (2002) Host Patch Selection Induced by Parasitism: Basic Reproduction Ratio R0 and Optimal Virulence,
Theoretical Population Biology,
vol. 62 pp.97-109
Chaumot A, Charles S, Flammarion P, Garric J, Auger P (2002) Using aggregation methods to assess toxicant effects on population dynamics in spatial systems,
Ecological Applications,
vol. 12 pp.1771-1784
Lamy B, Roy P, Carret G, Flandrois J-P, Delignette-Muller M-L (2002) What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia,
Clinical Infectious Diseases,
vol. 35 pp.842-850
Pavé A, Hervé JC, Schmidt-Lainé C (2002) Mass extinctions biodiversity explosions and ecological niches,
Comptes rendus biologies,
vol. 325(7) pp.755-765
Pavé A, Laurent C (2002) Les très grands équipements scientifiques : vers une évolution des concepts et des moyens,
Natures Sciences Sociétés,
vol. 10(2) pp.80-92
Schmidt-Lainé C, Pavé A (2002) Environnement : modélisation et modèles pour comprendre agir ou décider dans un contexte interdisciplinaire,
Natures Sciences Sociétés,
vol. 10 pp.3-35
Gonthier A, Guérin-Faublée V, Tilly B, Delignette-Muller M-L (2001) Optimal growth temperature of O157 and non-O157 Escherichia coli strains,
Letters in Applied Microbiology,
vol. 33 pp.352-356
Noel C, Charles S, Francon A, Flandrois J-P (2001) A mathematical model describing the thermal virus inactivation,
Vaccine,
vol. 19 pp.3575-3582
Acot P, Charles S, Delignette-Muller M-L (2000) Artificial intelligence and meaning--some philosophical aspects of decision-making,
Acta Biotheoretica,
vol. 48 pp.173-179
Auger P, Charles S, Viala M, Poggiale J-C (2000) Aggregation and emergence in ecological modelling: integration of ecological levels,
Ecological Modelling,
vol. 127 pp.11-20
Auger P, Poggiale J-C, Charles S (2000) Emergence of individual behaviour at the population level. Effects of density-dependent migration on population dynamics,
Comptes Rendus de l`Académie des Sciences - Séries III - Sciences de la Vie,
vol. 323 pp.119-127
Charles S, Bravo de la Parra R, Mallet J -P, Persat H, Auger P (2000) Annual spawning migrations in modelling brown trout population dynamics inside an arborescent river network,
Ecological Modelling,
vol. 133 pp.15-31
Cirio A, Méot F, Delignette-Muller M-L, Boivin R (2000) Determination of parotid urea secretion in sheep by means of ultrasonic flow probes and a multifactorial regression analysis,
American Society of Animal Science,
vol. 78 pp.471-476
Delignette-Muller M-L, Rosso L (2000) Biological variability and exposure assessment,
International Journal of Food Microbiology,
vol. 58 pp.203-212
Tomassone R, Charles-Bajard S, Bellanger L (2000) Discussion et commentaires - La planification des expériences : choix des traitements et dispositif expérimental,
Journal de la Société Française de Statistique,
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Chaumot A, Charles S, Auger P (1999) Development of an ecotoxicological model in an arborescent river network: an attempt with a brown trout population,
Aspects of Applied Biology - Challenges in applied population biology,
vol. 53 pp.131-136
Chiorino G, Auger P, Chassé J-L, Charles S (1999) Behavioral choices based on patch selection: a model using aggregation methods,
Mathematical Biosciences,
vol. 157 pp.189-216
Cornu M, Delignette-Muller M-L, Flandrois J-P (1999) Characterization of Unexpected Growth of Escherichia coli O157:H7 by Modeling,
Applied and environmental microbiology,
vol. 65 pp.5322-5327
Mallet J-P, Charles S, Persat H, Auger P (1999) Growth modelling in accordance with daily water temperature in European grayling (Thymallus thymallus L.),
Canadian Journal of Fisheries and Aquatic Sciences,
vol. 56 pp.994-1000
Tsitrone A, Charles S, Biémont C (1999) Dynamics Of Transposable Elements Under The Selection Model,
Genetical Research,
vol. 74 pp.159-164
Charles S, Bravo de la Parra R, Mallet J -P, Persat H, Auger P (1998) A density dependent model describing Salmo trutta population dynamics in an arborescent river network. Effects of dams and channelling,
Comptes Rendus de l`Académie des Sciences - Séries III - Sciences de la Vie,
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Charles S, Bravo de la Parra R, Mallet J -P, Persat H, Auger P (1998) Population Dynamics Modelling in an Hierarchical Arborescent River Network: An Attempt with Salmo trutta,
Acta Biotheoretica,
vol. 46 pp.223-234
Delignette-Muller M-L (1998) Relation between the generation time and the lag time of bacterial growth kinetics,
International Journal of Food Microbiology,
vol. 43 pp.97-104
Guérin-Faublée V, Charles S, Chomarat M, Flandrois J-P (1997) Reappraisal of the effect of temperature on the growth kinetics of Aeromonas salmonicida,
Letters in Applied Microbiology,
vol. 25 pp.363-366
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International Journal of Food Microbiology,
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Charles-Bajard S (1996) Modélisation à visée prévisionnelle de la cinétique de croissance d`une population de Listeria monocytogenes, , 1996
Guérin-Faublée V, Delignette-Muller M-L, Vigneulle M, Flandrois J-P (1996) Application of a modified disc diffusion technique to antimicrobial susceptibility testing of Vibrio anguillarum and Aeromonas salmonicida clinical isolates,
Veterinary Microbiology,
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Journal of Food Protection,
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Applied and Environmental Microbiology,
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Journal of Biological Chemistry,
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Bulletin of Mathematical Biology,
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Nucleic Acids Research,
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