article :
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge J M, Howald C, Foissac S, Ucla C, Chrast J, Ribeca P, Martin D, Murray R R, Yang X, Ghamsari L, Lin C, Bell I, Dumais E, Drenkow J, Tress M L, Gelpi J L, Orozco M, Valencia A, van Berkum N L, Lajoie B R, Vidal M, Stamatoyannopoulos J, Batut P, Dobin A, Harrow J, Hubbard T, Dekker J, Frankish A, Salehi-Ashtiani K, Reymond A, Antonarakis S E, Guigo R, Gingeras T R (2012)
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells, PLoS one, vol. 7 pp.1-22
Sacomoto G, Kielbassa J, Chikhi R, Uricaru R, Antoniou P, Sagot M-F, Peterlongo P, Lacroix V (2012)
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data, BMC Bioinformatics, vol. 13 pp.1-12
Veron AS, Lemaitre C, Gautier C, Lacroix V, Sagot M-F (2011)
Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny, BMC Genomics, vol. 12(1) pp.1-38
Schbath S, Lacroix V, Sagot M-F (2009)
Assessing the exceptionality of coloured motifs in networks, Eurasip Journal on Bioinformatics and Systems Biology, vol. 2009 pp.1-9
Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot M-F, Stougie L (2008)
Modes and Cuts in Metabolic Networks:Complexity and Algorithms, BioSystems, vol. 95 - n°1 pp.51-60
Lacroix V, Cottret L, Thébault P, Sagot M-F (2008)
An Introduction to Metabolic Networks and Their Structural Analysis, IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 5 - n°4 pp.1-24
Bourqui R, Cottret L, Lacroix V, Auber D, Mary P, Sagot M-F, Jourdan F (2007)
Metabolic network visualization eliminating node redundance and preserving metabolic pathways, BMC Systems Biology, vol. 1 - n°29 pp.1-19
Lacroix V, Fernandes CG, Sagot M-F (2006)
Motif search in graphs: application to metabolic networks., IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 3 - n°4 pp.360-368
book :
Lacroix V (2008)
Identification de motifs dans les réseaux métaboliques, Edilivre, 2008
inbook :
Ribeca P, Lacroix V, Sammeth M, Guigo R (2012)
Analysis of RNA Transcripts by High-Throughput RNA Sequencing, , vol. pp.544-554
inproceedings :
Peterlongo P, Schnel N, Pisanti N, Sagot M-F, Lacroix V (2010)
Identifying SNPs without a Reference Genome by Comparing Raw Reads, SPIRE, Springer, Lecture Notes in Computer Science, vol. 6393 pp.147-158
Vieira-Milreu P, Acuña V, Birmelé E, Crescenzi P, Marchetti-Spaccamela A, Sagot M-F, Stougie L, Lacroix V (2010)
Enumerating Chemical Organisations in consistent metabolic networks: complexity and algorithms, WABI` 2010, Springer-Verlag Berlin, Lecture notes in computer science, vol. 6293 pp.226-237
Lacroix V, Sammeth M, Guigo R, Bergeron A (2008)
Exact Transcriptome Reconstruction from Short Sequence Reads, Proceeding of WABI`08, Springer Verlag, Lecture Notes in Bioinformatics, vol. 5251 pp.50-63
Bourqui R, Auber D, Lacroix V, Jourdan F (2006)
Metabolic network visualization using constraint planar graph drawing algorithm, 10th conf. on Information Visualization, IEEE Computer Society pp.489-496
Lacroix V, Fernandes CG, Sagot M-F (2005)
Reaction motifs in metabolic networks, Proceedings of WABI `05, Springer-Verlag, Lecture Notes in Computer Science, vol. 3692 pp.178-191
phdthesis :
Lacroix V (2007)
Identification de motifs dans les réseaux métaboliques Définitions algorithmes et application au métabolisme d’Escherichia coli
