UMR CNRS 5558 Laboratoire de Biométrie et Biologie Évolutive

article :
Debernardi A, Suzanne E, Formant A, Pène L, Dufour A-B, Lobry JR (2011)
One year variability of peak heights heterozygous balance and inter-locus balance for the DNA positive control of AmpFlSTR Identifiler STR kit, Forensic Science International: Genetics, vol. 5 pp.43-49

Haned H, Pène L, Lobry JR, Dufour A-B, Pontier D (2011)
Estimating the Number of Contributors to Forensic DNA Mixtures: Does Maximum Likelihood Perform Better Than Maximum Allele Count?, Journal of Forensic Sciences, vol. 56(1) pp.23-28

Devillers H, Lobry JR, Menu F (2008)
An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations, Journal of Theoretical Biology, vol. 255 pp.307-315

Dufour A-B, Lobry JR (2008)
From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals, Biométrie Humaine et Anthropologie, vol. 26 pp.33-39

Morisset S, Peyron F, Lobry JR, Garweg J, Ferrandiz J, Musset K, Gomez-Marin JE, de la Torre A, Demar M, Carme B, Mercier Co, Garin JF, Cesbron-Delauw MF (2008)
Serotyping of Toxoplasma gondii: striking homogeneous pattern between symptomatic and asymptomatic infections within Europe and South America, Microbes and Infection, vol. 10 pp.742-747

Necşulea A, Lobry JR (2007)
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry, Molecular Biology and Evolution, vol. 24 pp.2169-2179

Lobry JR, Necşulea A (2006)
Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes., Gene, vol. 385 pp.128-136

Necşulea A, Lobry JR (2006)
Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major, Gene, vol. 385 pp.28-40

Palmeira L, Guéguen L, Lobry JR (2006)
UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes, Molecular Biology and Evolution, vol. 23 pp.2214-2219

Peyron F, Lobry JR, Musset K, Ferrandiz J, Gómez-Marín J E, Petersen E, Meroni V, Rausher B, Mercier CO, Picot S, Cesbron-Delauw MF (2006)
Serotyping of Toxoplasma gondii in chronically infected pregnant women : predominance of type II in Europe and types I and III in Colombia (South America), Microbes and Infection, vol. 8 pp.2333-2340

Sémon M, Lobry JR, Duret L (2006)
No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans, Molecular Biology and Evolution, vol. 23 pp.523-529

Charif D, Thioulouse J, Lobry JR, Perrière G (2005)
Online synonymous codon usage analyses with the ade4 and seqinR packages, Bioinformatics, vol. 21 pp.545-547

Zagordi O, Lobry JR (2005)
Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons, Gene, vol. 347 pp.175-182

Lobry JR (2004)
Life history traits and genome structure: aerobiosis and G+C content in bacteria, Lecture Notes in Computer Sciences, vol. 3039 pp.679-686

Lobry JR, Chessel D (2003)
Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria, Journal of Applied Genetics, vol. 44 pp.235-261

Lobry JR, Louarn JM (2003)
Polarisation of prokaryotic chromosomes, Current Opinion in Microbiology, vol. 6 pp.101-108

Lobry JR, Sueoka N (2002)
Asymmetric directional mutation pressures in bacteria, Genome Biology, vol. 26 pp.1-14

Frank AC, Lobry JR (2000)
Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes, Bioinformatics, vol. 16 pp.560-561

Picardeau M, Lobry JR, Hinnebusch B J (2000)
Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids, Genome Research, vol. 10 pp.1594-1604

Charles H, Mouchiroud D, Lobry JR, Goncalves I, Rahbe Y (1999)
Gene size reduction in the bacterial aphid endosymbiont Buchnera, Molecular Biology and Evolution, vol. 16 pp.1820-1822

Frank AC, Lobry JR (1999)
Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms, Gene, vol. 238 pp.65-77

Kano-Sueoka T, Lobry JR, Sueoka N (1999)
Intra-strand biases in bacteriophage T4 genome, Gene, vol. 238 pp.59-64

Lobry JR, Lobry C (1999)
Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant, Molecular Biology and Evolution, vol. 16 pp.719-723

Picardeau M, Lobry JR, Hinnebusch B J (1999)
Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome, Molecular Microbiology, vol. 32 pp.437-445

Galtier N, Lobry JR (1997)
Relationships between genomic G+C content RNA secondary structures and optimal growth temperature in prokaryotes, Journal of Molecular Evolution, vol. 44 pp.632-636

Lobry JR (1997)
Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species, Gene, vol. 205 pp.309-316

Lobry JR (1996)
Asymmetric substitution patterns in the two DNA strands of bacteria, Molecular Biology and Evolution, vol. 13 pp.660-665

Lobry JR (1996)
Origin of replication of Mycoplasma genitalium, Science, vol. 272 pp.745-746

Lobry JR (1996)
A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria, Biochimie, vol. 78 pp.323-326

Perrière G, Lobry JR, Thioulouse J (1996)
Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences, Computer Applications in the Biosciences, vol. 12 pp.519-524

Lobry JR (1995)
Properties of a general model of DNA evolution under no-strand-bias conditions, Journal of Molecular Evolution, vol. 40 pp.326-330

Rosso L, Lobry JR, Bajard S, Flandrois J-P (1995)
Convenient Model To Describe the Combined Effects of Temperature and pH on Microbial Growth, Applied and Environmental Microbiology, vol. 61 pp.610-616

Thioulouse J, Lobry JR (1995)
Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package, Bioinformatics, vol. 11 pp.321-329

Lobry JR, Gautier C (1994)
Hydrophobicity expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes, Nucleic Acids Research, vol. 22 pp.3174-3180

Rosso L, Lobry JR, Flandrois J-P (1993)
An unexpected correlation between cardinal temperatures of microbial growth highlighted by a new model, Journal of Theoretical Biology, vol. 162 pp.447-463

Lobry JR, Carret G, Flandrois J-P (1992)
Maintenance requirements of Escherichia coli ATCC 25922 in the presence of sub-inhibitory concentrations of various antibiotics, Journal of Antimicrobial Chemotherapy, vol. 29 pp.121-127

Lobry JR, Flandrois J-P, Carret G, Pavé A (1992)
Monod`s bacterial growth model revisited, Bulletin of Mathematical Biology, vol. 54(1) pp.117-122

Carret G, Flandrois J-P, Lobry JR (1991)
Biphasic kinetics of bacterial killing by quinolones, Journal of Antimicrobial Chemotherapy, vol. 27 pp.319-327

Lobry JR, Flandrois J-P (1991)
Comparison of estimates of Monod`s growth model from the same data set, Binary, vol. 3 pp.20-23

Lobry JR, Rosso L, Flandrois J-P (1991)
A FORTRAN subroutine for the determination of parameter confidence limits in non-linear Models, Binary, vol. 3 pp.86-93

inbook :
Charif D, Lobry JR (2007)
SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis, , vol. pp.207-232

phdthesis :
Lobry JR (1991)
Re-Evalution du modèle de croissance de Monod. Effet des antibiotiques sur l`énergie de maintenance.

unpublished :
Necşulea A, Lobry JR (2007)
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry, , vol. pp.379-381