[2008-10-01 --> 2009-09-30]
Leonor Palmeira
post-doc - UCBL
courriel : 
tél. : +33 (0)4 72 43 35 82
fax : +33 (0)4 72 43 13 88
UMR CNRS 5558 - LBBE
"Biométrie et Biologie Évolutive"
UCB Lyon 1 - Bât. Grégor Mendel
43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex
Bâtiment : Mendel (741) - 1er étage Bureau : 11
Je travaille maintenant à Liège, ma nouvelle page web se trouve
ici.
- Communications
+Conférences et Workshops
-Conférences et Workshops
- L. Palmeira, L. Guéguen and J. R. Lobry. Theoretical approaches for the study of
dinucleotide content in genomes. Theoretical Approaches for the Genome 2006 (November 2006 - Annecy, France).
- L. Palmeira, J. R. Lobry and L. Guéguen. Models of DNA evolution with neighbor-dependent
substitutions. Otto Warburg Summer School and Workshop 2006 (September 2006 - Berlin, Germany).
- L. Palmeira, L. Guéguen and J. R. Lobry. Dinucleotide over- and under-representation in
bacteria. ARC annual meeting (December 2005 -
Jouy-en-Josas, France).
- L. Palmeira, L. Guéguen and J. R. Lobry. Codon usage and UV Exposure in bacteria. Physics and Biology Conference (October 2005 - Wrocław, Poland).
- L. Palmeira, L. Guéguen and J. R. Lobry. Codon usage and UV exposure in bacteria. IME-USP (August 2005 - São Paulo,
Brasil).
- L. Palmeira, L. Guéguen. Robustesse des méthodes de
reconstruction phylogénétiques face à un écart à l’hypothèse
d’indépendance entre sites. Alphy 2005
(January 2005 - Montpellier, France).
+Séminaires
-Séminaires
- L. Palmeira. Viral evolution : insights from sequence analysis. Seminar at Rolf Backofen’s lab. (July 2009 - Freiburg, Germany).
- L. Palmeira. Sequence effects on nucleosome positioning and chromatin structure. Seminar at the Laboratoire Arago (June 2008 - Banyuls, France).
- L. Palmeira, L. Guéguen and J. R. Lobry. Theoretical approaches for the study of
dinucleotide content in genomes. Seminar at Michael Laessig’s lab (December 2006 - Cologne, Germany).
- L. Palmeira, L. Guéguen and J. R. Lobry. Neighboring-site dependencies in genome evolution : analysis and modelling. Seminar at Arndt von Haeseler’s lab (November 2006 - Vienna, Austria).
- L. Palmeira, L. Guéguen and J. R. Lobry. Dinucleotides in evolution : analysis and modelling. Seminar at Axel Meyer’s lab (October 2006 - Constance, Germany).
- L. Palmeira, L. Guéguen and J. R. Lobry. Dinucleotides et exposition aux UVs chez les
procaryotes. Seminar at the Laboratoire Arago (December 2005 - Banyuls, France).
- Logiciels
+SeqinR
-SeqinR
Contribution to the seqinR
package : a package for the analysis and visualization of
biological sequence (DNA and protein) data.
+Alfacinha
-Alfacinha
Development of alfacinha : a library of Python modules to simulate the evolution of biological sequences with neighbor-dependent substitutions.
- Enseignement
+En anglais
-En anglais
- Module ASIV :
- Sequence retrieval, BLAST, sequence alignment, sequence similarity
search [online practical]
- IGC Computational Biology :
- Python Programming - bases for efficient programming [slides]
- Initiation to Python and a little programming [practical]
+En français
-En français
- Cursus MIV, année L3 :
- Cursus MIV, année M1 :
- Projet en Bioinformatique - Outil de simulation de l’évolution d’une sÈquence
nucléique [polycopiés
de TP]
- Master 2, Module MPS :
article :
Palmeira L, Penel S, Lotteau V, Rabourdin-Combe C, Gautier C (2011)
PhEVER: a database for the global exploration of virus-host evolutionary relationships, Nucleic Acids Research, vol. 39 pp.569-575
Vaillant C, Palmeira L, Chevereau G, Audit B, D`Aubenton-Carafa Y, Thermes C, Arneodo A (2010)
A novel strategy of transcription regulation by intra-genic nucleosome ordering, Genome Research, vol. 20 pp.59-67
Chevereau G, Palmeira L, Thermes C, Arneodo A, Vaillant C (2009)
Thermodynamics of Intragenic Nucleosome Ordering, Physical review letters, vol. 103(18) pp.188-103
Palmeira L, Guéguen L, Lobry JR (2006)
UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes, Molecular Biology and Evolution, vol. 23 pp.2214-2219
phdthesis :
Palmeira L (2007)
Analyse et modélisation des dépendances entre sites voisins dans l’évolution des séquences d’ADN
