Kremer N, Charif D, Henri H, Bataille M, Prévost G, Kraaijeveld K, Vavre F (2009)
A new case of Wolbachia dependence in the genus Asobara: evidence for parthenogenesis induction in Asobara japonica, Heredity, vol. 103(3) pp.248-256
Kremer N, Voronin D, Charif D, Mavingui P, Mollereau B, Vavre F (2009)
Wolbachia Interferes with Ferritin Expression and Iron Metabolism in Insects, PloS Pathogens, vol. 5(10) pp.1-12
Patot S, Lepetit D, Charif D, Varaldi J, Fleury F (2009)
Molecular Detection Penetrance and Transmission of an Inherited Virus Responsible for Behavioral Manipulation of an Insect Parasitoid, Applied and environmental microbiology, vol. 75 pp.703-710
Penel S, Arigon A-M, Dufayard J-F, Sertier A-S, Daubin V, Duret L, Gouy M, Perriere G (2009)
Databases of homologous gene families for comparative genomics, BMC Bioinformatics, vol. 10 pp.1-13
Picard F, Miele V, Daudin JJ, Cottret L, Robin S (2009)
Deciphering the connectivity structure of biological networks using MixNet, BMC Bioinformatics, vol. 10 pp.1-11
Gouy M, Delmotte S (2008)
Remote access to ACNUC nucleotide and protein sequence databases at PBIL, Biochimie, vol. 90 pp.555-562
Miele V, Vaillant C, d`Aubenton-Carafa Y, Thermes C, Grange T (2008)
DNA physical properties determine nucleosome occupancy from yeast to fly, Nucleic Acids Research, vol. 36 pp.3746-3756
Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, Lotteau V, Rabourdin-Combe C (2008)
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks, Nucleic Acids Research, vol. pp.1-8
Navratil V, Penel S, Delmotte S , Mouchiroud D, Gautier C, Aouacheria A (2008)
DigiPINS: A database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies, Biochimie, vol. 90 pp.563-569
Nuel G, Miele V, Slaoui Y, Rebai A (2008)
Taking into account missing genotypes and errors in Family Based Association Testing using an Expectation-Maximization framework, ISB 2008, , International Symposium on Biotechnology pp.508-514
Nuel G, Slaoui Y, Miele V (2008)
Libfbat: a C++ library for family based association testing, , vol. pp.508-514
Studer A, Penel S, Duret L, Robinson-Rechavi M (2008)
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes, Genome Research, vol. 18 pp.1393-1402
Zanghi H, Ambroise C, Miele V (2008)
Fast online graph clustering via Erdos–Rényimixture, Pattern Recognition, vol. 41 pp.3592-3599
Charif D, Lobry JR (2007)
SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis, article in: Structural approaches to sequence evolution: Molecules networks populations, Springer Verlag, pp.207-232
Gavotte L, Henri H, Stouthamer R , Charif D, Charlat S , Boulétreau M, Vavre F (2007)
A Survey of the Bacteriophage WO in the Endosymbiotic Bacteria Wolbachia, Molecular Biology and Evolution, vol. 24 pp.427-435
Mouton L, Henri H, Charif D, Boulétreau M, Vavre F (2007)
Interaction between host genotype and environmental conditions affects bacterial density in Wolbachia symbiosis, Biology Letters, vol. 3 pp.210-213
Pannebakker BA, Loppin B, Elemans CP, Humblot L, Vavre F (2007)
Parasitic inhibition of cell death facilitates symbiosis, Proceedings of The National Academy of Sciences of The United States of America, vol. 104 pp.213-215
Rezvoy C, Charif D, Guéguen L , Marais GAB (2007)
MareyMap: an R-based tool with graphical interface for estimating recombination rates, Bioinformatics, vol. 23 pp.2188-2189
Daudin JJ, Lacroix V, Mariadassou M, Miele V, Picard F, Robin S, Sagot M-F (2006)
Uncovering structure in biological networks, , vol. pp.471-483
Macedo-Rouet M, Charles S, Ney M, Batier C, Humblot L, Marquez E, Lallich-Boidin G (2006)
Un dispositif Web pour l`enseignement des mathématiques à l`université - quels impacts sur la performance et la motivation des étudiants ?, Sciences et Technologies de l`Information et de la Communication pour l`Education et la Formation, vol. 13 pp.1409-1418
Miele V, Vaillant C, D`Aubenton Y, Robelin D, Prum B, Thermes C (2006)
DNA sequence drives nucleosome occupancy of yeast promoters, , vol. pp.2783-2784
Nicolas P, Tocquet A-S, Miele V, Muri F (2006)
A reversible jump Markov chain Monte Carlo algorithm for bacterial promoter motifs discovery, Journal of Computational Biology, vol. 13 pp.651-667
Bazin E, Duret L, Penel S, Galtier N (2005)
Polymorphix: a sequence polymorphism database, Nucleic Acids Research, vol. 33 pp.481-484
Charif D, Thioulouse J, Lobry JR, Perrière G (2005)
Online synonymous codon usage analyses with the ade4 and seqinR packages, Bioinformatics, vol. 21 pp.545-547
Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G (2005)
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases, Bioinformatics, vol. 21 pp.2596-2603
Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, McLaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R (2005)
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes, Nucleic Acids Research, vol. 33 pp.297-302
Miele V, Bourguignon PY, Robelin D, Nuel G, Richard H (2005)
seq++: a package for biological sequences analysis with a range of Markov-related models, BioInformatics, vol. 21 pp.2783-2784
Ney M, Nifle R, Charles S, Macedo-Rouet M, Humblot L, Batier C (2004)
Approche méthodologique pour faire évoluer la pédagogie en TD vers un apprentissage actif soutenu par des TICE, , vol. pp.157-165
Charles S, Ney M, Mouchiroud D, Humblot L, Batier C (2003)
Un site web pour l`enseignement interdisciplinaire des Mathématiques en Biologie, EIAH (Environnement Informatique d`Apprentissage Humain), vol. pp.445-452
David G, Blondeau K, Schiltz M, Penel S , Lewit-Bentley A (2003)
YodA from Escherichia coli is a metal-binding lipocalin-like protein, Journal of Biological Chemistry, vol. 278 pp.43728-43735
Penel S, Morrison RG, Dobson PD, Mortishire-Smith RJ, Doig AJ (2003)
Length preferences and periodicity in beta-strands. Antiparallel edge beta-sheets are more likely to finish in non-hydrogen bonded rings, Protein engineering, vol. 16 pp.957-961
Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G (2003)
Integrated databanks access and sequence/structure analysis services at the PBIL., Nucleic Acids Research, vol. 31 pp.3393-3399
Bronner G, Spataro B, Gautier C (2002)
Cartographie génomique comparée chez les mammifères, Médecine Science, vol. 18 pp.767-774
Bronner G, Spataro B, Gautier C (2002)
Comparative genomic mapping in mammals, Medecine Science, vol. 18 pp.767-774
Bronner G, Spataro B, Page M, Gautier C, Rechenmann F (2002)
Modeling comparative mapping using objects and associations, Computers and Chemistry, vol. 26 pp.413-420
Andrew CD, Penel S, Jones GR, Doig AJ (2001)
Stabilizing nonpolar/polar side-chain interactions in the alpha-helix, Proteins-Structure Function and Genetics, vol. 45 pp.449-455
Cochran DAE, Penel S, Doig AJ (2001)
Effect of the N1 residue on the stability of the alpha-helix for all 20 amino acids, Protein Science, vol. 10 pp.463-470
Doig AJ , Andrew CD, Cochran DA , Hughes E, Penel S, Sun JK, Stapley BJ, Clarke DT, Jones GR (2001)
Structure stability and folding of the alpha-helix, Biochemical Society Symposia, vol. 68 pp.95-110
Penel S, Doig AJ (2001)
Rotamer strain energy in protein helices - quantification of a major force opposing protein folding, Journal of Molecular Biology, vol. 305 pp.961-968
Spataro B (2001)
GeMME une interface modélisant la cartographie comparée des mammifères Application, , 2001
Sun JK, Penel S, Doig AJ (2000)
Determination of alpha-helix N1 energies after addition of N1 N2 and N3 preferences to helix/coil theory, Protein Science, vol. 9 pp.750-754
Penel S, Hughes E, Doig AJ (1999)
Side-chain structures in the first turn of the alpha-helix, Journal of Molecular Biology, vol. 287 pp.127-143
Penel S, Morrison RG, Mortishire-Smith RJ, Doig AJ (1999)
Periodicity in alpha-helix lengths and C-capping preferences, Journal of Molecular Biology, vol. 293 pp.1211-1219
Penel S, Pebay-Peyroula E, Rosenbusch J, Rummel G, Schirmer T, Timmins PA (1998)
Detergent binding in trigonal crystals of OmpF porin from Escherichia coli, Biochimie, vol. 80 pp.543-551
Hermoso J, Pignol D, Penel S, Roth M, Chapus C, FontecillaCamps JC (1997)
Neutron crystallographic evidence of lipase-colipase complex activation by a micelle, EMBO Journal, vol. 16 pp.5531-5536
Penel S, Legrand P (1997)
MAINDEX - manual indexation for area-detector crystallographic data, Journal Applied Crystallography, vol. 30 pp.206-206