UMR CNRS 5558 Laboratoire de Biométrie et Biologie Évolutive

Suite aux contraintes imposées par le PRES, l’adresse de l’unité à indiquer dans vos publications est de la forme :

Université de Lyon, F-69000, Lyon ; Université Lyon 1 ; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622, Villeurbanne, France.

Pour le secteur santé, vous indiquez votre adresse en n’oubliant pas de mentionner le nom de l’unité « UMR5558 ». Les mentions de tutelle (INRIA, INRA, INSERM) doivent être intercalées après université Lyon 1 et l’adresse de l’UMR qui est obligatoirement située en dernier.

Une nouvelle directive nous impose de mettre une tutelle par ligne (cf message de Mornex du 14/11) . Je propose que nous gardions le formalisme ci-dessus qui est déjà suffisamment contraignant .

Si vous rencontrez un problème auprès des éditeurs, contactez la direction du laboratoire qui transmettra au vice président du CS.

Cordialement, D. Mouchiroud

10 articles

article :
Arigon A-M, Perriere G, Gouy M
Proposals for classification methods dedicated to biological data, International Journal of Biomedical Engineering and Technology, vol. 3(1) pp.4-21

Beisson J, Bétermier M, Bré M-H, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer Jr JR, Sperling L
Paramecium tetraurelia: The Renaissance of an Early Unicellular Model, Emerging Model Organisms, vol. 2010(1) pp.1-55

Brochet AL, Gauthier-Clerc M, Guillemain M, Fritz H, Waterkeyn A, Baltanas A, Green AJ
Field evidence of dispersal of branchiopods ostracods and bryozoans by teal textit(Anas crecca) in the Camargue (southern France), Hydrobiologia, vol. 637(1) pp.255-261

Desouhant E, Luccheta P, Giron D, Bernstein C
Feeding activity pattern in a parasitic wasp when foraging in the field, Ecological Research, vol. pp.1-10

Gouy M, Guindon S, Gascuell O
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol. 27(2) pp.221-224

Pontier D, Fouchet D, Bried J
Can cat predation help competitors coexist in seabird communities?, Journal of Theoretical Biology, vol. 262(2010) pp.90-96

Rabilloud M, Wallon M, Peyron F
In Utero and at Birth Diagnosis of Congenital Toxoplasmosis, The Pediatric Infectious Disease Journal, vol. 29(5) pp.1-6

Vaillant C, Palmeira L, Chevereau G, Audit B, D`Aubenton-Carafa Y, Thermes C, Arneodo A
A novel strategy of transcription regulation by intra-genic nucleosome ordering, Genome Research, vol. 20 pp.59-67

Weladji RB, Holand O, Gaillard J-M, Yoccoz N G, Mysterud A, Nieminen M, Stenseth NC
Age-specific changes in different components of reproductiveoutput in female reindeer: terminal allocation or senescence?, Oecologia, vol. 162 pp.261-271

inproceedings :
Gavranovic H, Tannier E
Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces Cerevisiae, Pacific Symposium on Biocomputing, , vol. 15 pp.21-30

232 articles

article :
Acuna V, Marchetti-Spaccamela A, Sagot M-F, Stougie L
A Note on the Complexity of Finding and Enumerating Elementary Modes, BioSystems, vol. pp.1-5

Afonso E, Thuilliez C, Gilot-Fromont E
Local meteorological conditions dynamics of seroconversion to Toxoplasma gondii in cats textit(Felis catus) and oocyst burden in a rural environment, Epidemiology and Infection, vol. pp.1-9

Aho Glélé LS, Fournel I, Tiv M, Astruc K, Cetre J-C
Emissions de micro-organismes dans les établissements de santé, Salles Propres, vol. 61 pp.21-26

Allemand R, Velle L
Les Trichobyrrhulus Ganglbauer de France : deux espèces méconnues et énigmatiques (Coleoptera Byrrhidae), L`Entomologiste, vol. 65(4) pp.167-170

Amat I, Desouhant E, Bernstein C
Differential use of conspecific-derived information by sexual and asexual parasitic wasps exploiting partially depleted host patches, Behavioral ecology and sociobiology, vol. 63 pp.563-572

Astagneau P, L’Hériteau F, Daniel F, Parneix P, Venier A-G, Malavaud S, Jarno P, Lejeune B, Savey A, Metzger M-H, Bernet C, Fabry J, Rabaud C, Tronel H, Thiolet J-M, Coignard B
Reducing surgical site infection incidence through a network: results from the French ISO-RAISIN surveillance system, Journal of hospital infection, vol. 72 pp.127-134

Bacchetta J, Harambat J, Dubourg L, Guy B, Liutkus A, Canterino I, Kassaï B, Putet G, Cochat P
Both extrauterine and intrauterine growth restriction impair renal function in children born very preterm, Kidney International, vol. 76(4) pp.445-452

Baillif S, Ecochard R, Hartmann D, Frenay M, Kodjikian L
Implant intraoculaire et chirurgie de la cataracte: comparaison de l’adhésion bactérienne et du risque d’endophtalmie selon le biomatériau, Jounal français d`ophtalmologie, vol. 32 pp.515-528

Bailly-Bechet M, Bradde S, Braunstein A, Flaxman A, Foini L, Zecchina R
Clustering with shallow trees, Journal of Statistical Mechanics: Theory and Experiment, vol. pp.1-17

Bajard A, Chabaud S, Pérol D, Boissel J-P, Nony P
Revisiting the level of evidence in randomized controlled clinical trials: A simulation approach, Contemporary Clinical Trials, vol. 30(5) pp.400-410

Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Paralez RE, Detter C, Pujic P, Bruce D, Lavire C, Challacombe JF, Brettin TS, Berry AM
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations, Genome Research, vol. 19(6) pp.1033-1043

Barbier S, Ecochard R, Schott A-M, Colin C, Delmas PD, Jaglal SB, Couris CM
Geographical variations in hip fracture risk for women: strong effects hidden in standardised ratios, Osteoporosis International, vol. 20 pp.371-377

Basille M, Herfindal I, Santin-Janin H, Linnell JDC, Odden J, Andersen R, Hogda KA, Gaillard J-M
What shapes Eurasian lynx distribution in human dominated landscapes: selecting prey or avoiding people?, Ecography, vol. 32(4) pp.683-691

Bérard S, Chateau A, Chauve C, Paul C, Tannier E
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes, Journal of Computational Biology, vol. 16(10) pp.1287-1309

Bel-Venner MC, Mondy N, Arthaud F, Marandet J, Giron D, Venner S, Menu F
Ecophysiological attributes of adult overwintering in insects: insights from a field study in the nut weevil Curculio nucum, Physiological Entomology, vol. 34 pp.61-70

Ben Cheikh A, Girouin N, Colombel M, Maréchal J-M, Gelet A, Bissery A, Rabilloud M, Lyonnet D, Rouvière O
Evaluation of T2-weighted and dynamic contrast-enhanced MRI in localizing prostate cancer before repeat biopsy, European radiology, vol. 19(3) pp.770-778

Berman M, Gaillard J-M, Weimerskirch H
Contrasted patterns of age-specific reproduction in long-lived seabirds, Proceedings of The Royal Society B-Biological Sciences, vol. 276 (1655) pp.375-382

Bernard S, Loffroy R , Sérusclate A, Boussele L, Bonnefoy E, Thévenong C, Rabilloud M, Revel D, Moulina P, Doueke P
Increased levels of endothelial microparticles CD144 (VE-Cadherin) positives in type 2 diabetic patients with coronary noncalcified plaques evaluated by multidetector computed tomography (MDCT), Atherosclerosis, vol. 203(2) pp.429-435

Bernasconi G, Antonovics J, Biere A, Charlesworth D, Delph LF, Filatov D, Giraud T, Hood ME, Marais GAB, McCauley D, Pannell JR, Shykoff JA, Vyskot B, Wolfe LM, Widmer A
Silene as a model system in ecology and evolution, Heredity, vol. pp.583-589

Biémont C
Are transposable elements simply silenced or are they under house arrest?, Trends in Genetics, vol. 25(8) pp.333-334

Billoir E, da Silva Ferrão-Filho A, Delignette-Muller M-L, Charles S
DEBtox theory and matrix population models as helpful tools in understanding the interaction between toxic cyanobacteria and zooplankton, Journal of Theoretical Biology, vol. 258 pp.380-388

Bonaïti-Pellié C, Andrieu N, Arveux P, Bonadona V, Buecher B, Delpech M, Jolly D, Julian-Reynier J, Luporsi E, Noguès C, Nowak F, Olschwang S, Orsi F, Pujol P, Saurin J-C, Sinilnikova O, Stoppa-Lyonnet D, Thépot F
Oncogénétique : estimation des besoins de la population en France pour les dix ans à venir, Bulletin du Cancer, vol. 96(9) pp.875-900

Bonenfant C, Gaillard J-M, Coulson T, Festa-Bianchet M, Loison A, Garel M, Egil Loe L, Blanchard P, Pettorelli N, Owen-Smith N, Du Toit J, Duncan P
Empirical Evidence of Density Dependence in Populations of Large Herbivores, Advances in Ecological research, vol. 41 pp.314-345

Bonenfant C, Pelletier F, Garel M, Bergeron
Age-dependent horn growth-survival relationship in wild sheep, Journal of Animal Ecology, vol. 78 pp.161-171

Bonnefoy E, Steg P-G, Boutitie F, Dubien P-Y, Lapostolle F, Roncalli J, Dissait F, Vanzetto G, Leizorowicz A, Kirkorian G
Comparison of primary angioplasty and pre-hospital fibrinolysis in acute myocardial infarction (CAPTIM) trial: a 5-year follow-up, European Heart Journal, vol. 30(13) pp.1598-1606

Bourgeois S, Gilot-Fromont E, Viallefont A, Boussambac F, Deemd SL
Influence of artificial lights logs and erosion on leatherback sea turtle hatchling orientation at Pongara National Park Gabon, Biological Conservation, vol. 142 pp.85-93

Bourgoin G, Garel M, Dubray D, Maillard D, Gaillard J-M
What determines global positioning system fix success when monitoring free-ranging mouflon?, European Journal of Wildlife, vol. 55 pp.603-613

Bourguignon L, Goutelle S, Burdin de Saint Martin J, Guillermet A, Bouniot P, Maire P, Ducher M
Variabilité pharmacocinétique intra-individuelle et traitement antibiotique prolongé, Médecine et maladies infectieuses, vol. 2859 pp.1-4

Bourguignon L, Goutelle S, Burdin de Saint Martin J, Maire P, Ducher M
Evaluation of various gentamicin dosage regimens in geriatric patients: a simulation study, Fundamental & Clinical Pharmacology, vol. pp.1-5

Bourguignon L, Goutelle S, Gérard C, Guillermet A, Burdin de Saint Martin J, Maire P, Ducher M
Pharmacocinétique de l’amikacine chez l’adulte : une hétérogénéité qui remet en cause le calcul de la dose basé sur le poids, Thérapie, vol. 64(1) pp.1-5

Boussau B
Phylogenetic Relationships Deduced from Whole Genome Comparisons, Encyclopedia of Life Sciences, vol. pp.1-8

Boussau B, Daubin V
Genomes as documents of evolutionary history, Trends in Ecology and Evolution, vol. 1192 pp.1-9

Boussau B, Guéguen L, Gouy M
A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies, Evolutionary Bioinformatics, vol. 5 pp.67-79

Bouvier A-M, Remontet L, Hédelin L, Launoy G, Jooste V, Grosclaude P, Belot A, Lacour B, Esteve J, Bossard N, Faivre J, FRANCIM
Conditional Relative Survival of Cancer Patients and Conditional Probability of Death, Cancer, vol. 115(19) pp.4616-4624

Braga M
BaobabLUNA: the solution space of sorting by reversals, Bioinformatics, vol. 25(14) pp.1833-1835

Braga MDV, Gautier C, Sagot M-F
An asymmetric approach to preserve common intervals while sorting by reversals, Algorithms for Molecular Biology, vol. 4(16) pp.1833-1835

Branca A, Vavre F, Silvain J-F, Dupas S
Maintenance of adaptive differentiation by Wolbachia induced bidirectional cytoplasmic incompatibility: the importance of sib-mating and genetic systems, BMC Evolutionary Biology, vol. 9(185) pp.1-13

Brinza L, Vinuelas J, Cottret L, Calevro F, Rahbé Y, Febvay G, Duport G, Colella S, Rabatel A, Gautier C, Fayard J-M, Sagot M-F, Charles H
Systemic analysis of the symbiotic function of Buchnera aphidicola the primary endosymbiont of the pea aphid Acyrthosiphon pisum, C.R. Biologies, vol. 332(11) pp.1034-1049

Bruzzone OA, Villacide JM, Bernstein C, Corley JC
Flight variability in the woodwasp Sirex noctilio (Hymenoptera: Siricidae): an analysis of flight data using wavelets, Journal of Experimental Biology, vol. 212 pp.731-737

Buiret G, Combe C, Favrel V, Pommier P, Martin L, Ecochard R, Fayette J, Tartas S, Ramade A, Céruse P
A retrospective multicenter study of the tolerance of induction chemotherapy with Docetaxel Cisplatin and 5-fluorouracil followed by radiotherapy with concomitant Cetuximab in 46 cases of squamous cell carcinoma of the head and neck, International Journal of Radiation Oncology, vol. pp.1-8

Calenge C, Dray S, Royer-Carenzi M
The concept of animals trajectories from a data analysis perspective, Ecological Informatics, vol. 4 pp.34-41

Callait-Cardinal M-P, Gilot-Fromont E, Chossat L, Gonthier A, Chauve C, Zenner L
Flock management and histomonosis in free-range turkeys in France: description and search for potential risk factors, Epidemiology and Infection, vol. 10 pp.1-11

Carlet J, Astagneau P, Brun-Buisson C, Coignard B, Salomon V, Tran B, Desenclos J-C, Jarlier V, Schlemmer B, Parneix P, Regnier B, Fabry J, Abenaïm L, Apert E, Aronica E, Beaucaire G, Bientz P, Brücker G, Chaperon J, Cremieux A-C, Cullet D, Dab W, Drouvot J, Drücker J, Dumartin C, Gachie J-P, Garnier P, Girard J-F, Grandbastien B, Hartemann P, Houssin D, Jarlier V, Labadie J-C, Lejeune B, Leluong T, Lepoutre A, Lequellec-Nathan M, May-Michellangeli L, Menard J, Reveillard O, Savey A
French National Program for Prevention of Healthcare-Associated Infections and Antimicrobial Resistance 1992–2008: Positive Trends But Perseverance Needed, Infection control and hospital epidemiology, vol. 30(8) pp.1-9

Chamaillé-Jammes S, Fritz H, Madzikanda H
Piosphere contribution to landscape heterogeneity: a case study of remote-sensed woody cover in a high elephant density landscape, Ecography, vol. 32 pp.871-880

Chamaillé-Jammes S, Valeix M, Bourgarel M, Murindagomo F, Fritz H
Seasonal density estimates of common large herbivores in Hwange National Park Zimbabwe, African Journal of Ecology, vol. 47(4) pp.804-808

Chapey E, Wallon M, Debize G, Rabilloud M, Peyron F
Diagnosis of congenital toxoplasmosis 1 using whole-blood 2 interferon-γ release assay, Journal of Clinical Microbiology, vol. pp.1-20

Charlat S, Duplouy A, Hornett EA, Dyson EA, Davies N, Roderick GK, Wedell N, Hurst GDD
The joint evolutionary histories of Wolbachia and mitochondria in Hypolimnas bolina, BMC Evolutionary Biology, vol. 9(64) pp.1-9

Charvat H, Ayzac L, Girard R, Gardes S, Ecochard R
Detecting related cases of bloodstream infections using time-interval distribution modelling, Journal of Hospital Infection, vol. pp.1-8

Chevereau G, Palmeira L, Thermes C, Arneodo A, Vaillant C
Thermodynamics of Intragenic Nucleosome Ordering, Physical review letters, vol. 103(18) pp.188-103

Cho T-H , Nighoghossian N , Tahon F , Némoz C , Hermier M , Salkine F , Derex L , Trouillas P , Froment J-C , Turjman F
Brain Stem Diffusion-Weighted Imaging Lesion Score: A Potential Marker of Outcome in Acute Basilar Artery Occlusion, AJNR Am J Neuroradiol, vol. 30 pp.194-198

Cluze C, Colonna M, Remontet L, Poncet F, Sellier E, Seigneurin A, Delafosse P, Bossard N
Analysis of the effect of age on the prognosis of breast cancer, Breast Cancer Research and Treatment, vol. pp.61-66

Cohas A, Allainé D
Social structure influences extra-pair paternity in socially monogamous mammals, Biology letters, vol. pp.42-48

Cohas A, Bonenfant C, Kempenaers B, Allainé D
Age-specific effect of heterozygosity on survival in alpine marmots Marmota marmota, Molecular Ecology, vol. 18 pp.1491-1503

Combes J-D, Grelier G, Laversanne M, Voirin N, Chabaud S, Ecochard R, Lasset C
Contribution of cell culture RNA extraction and reverse transcription to the measurement error in quantitative reverse transcription polymerase chain reaction-based gene expression quantification, Analytical Biochemistry, vol. 393(1) pp.29-35

Cornu C, Bissery A, Malbos C, Garwig R, Cocherel C, Ecochard R, Peyron F, Wallon M
Factor affecting the adherence to an antenatal screening programme : an experience with toxopoplasmosis sreenning in France, Eurosurveillance, vol. 14(9) pp.1-5

Cottraux J, Druon Note I, Boutitie F, Milliery M, Genouihlac V, Yao SN, Note B, Mollard E, Bonasse F, Gaillard S, Djamoussian D, C de Mey, Culem A, Gueyffier F
Cognitive Therapy versus Rogerian Supportive Therapy in Borderline Personality Disorder, Psychotherapy and psychosomatics, vol. 78(5) pp.307-316

Couris C-M, Polazzia S, Olive F, Remontet L, Bossard N, Gomez F, Schotta A-M, Mitton N, Colonna M, Trombert B
Breast cancer incidence using administrative data: correction with sensitivity and specificity, Journal of Clinical Epidemiology, vol. 62(6) pp.660-666

Da Silva A, Gaillard J-M, Yoccoz NY, Mark Hewison AJ, Galan M, Coulson T, Allainé D, Vial L, Delorme D, Van Laere G, Klein F, Luikart G
Heterozygosity-fitness correlations revealed by neutral and cadidate gene markers in roe deer from a long-term study, Evolution, vol. 63(2) pp.403-417

Danzon A, Belot A, Maynadié M, Remontet L, Gossart-Dupont A-C, Carbonnel F, association FRANCIM
Incidence and survival of gastric non-Hodgkin’s lymphoma: A population-based study from the Association of the French Cancer Registries(FRANCIM), Acta Oncologica, vol. pp.1-7

De Angelis R, Francisci S, Baili P, Marchesi F, Roazzi P, Belot A, Crocetti E, Pury P, Knijn A, Coleman M, Capocaccia R, Group EUROCARE Working
The EUROCARE-4 database on cancer survival in Europe: Data standardisation quality control and methods of statistical analysis, European Journal of Cancer Prevention, vol. 45(6) Sp.Iss.SI pp.909-930

De Angelis R, Scurati S, Raschi E, Liutkus A, Belot A, Borghi MO, Meroi PL, Cimaz R
Pro-inflammatory genotype as a risk factor for aPL-associated thrombosis: Report of a family with multiple anti-phospholipid positive members, , vol. 32(1) pp.60-63

De Beaudrap P, Etard JF, Diouf A, Ndiaye I, Guèye FN, Sow PS, Mboup S, Ndoye I, Ecochard R, Eric D
Modeling CD4+ Cell Count Increase Over a Six-Year Period in HIV-1–Infected Patients on Highly Active Antiretroviral Therapy in Senegal, American Journal of Tropical Medicine and Hygiene, vol. 80(6) pp.1047-1053

de Fleurian G, Perrin J, Ecochard R, Dantony E, Lanteaume A, Achard V, Grillo J-M, Guichaoua M-R, Botta A, Sari-Minodier I
Occupational exposures obtained by questionnaire in clinical practice and their association with semen quality, Journal of Andrology, vol. 30(5) pp.566-579

Deloger M, Cavalli FMG, Lerat E, Biémont C, Sagot M-F, Vieira C
Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster, Gene, vol. 439 pp.55-62

Dequiedt S, Lelièvre M, Jolivet C, Saby NPA, Martin M, Thioulouse J, Maron P-A, Mougel C, Chemidlin Prévost-Bouré N, Arrouays D, Lemanceau P, Ranjard L
ECOMIC-RMQS: biogéographie microbienne à l`échelle de la France, Etude et Gestion des Sols, vol. 16(3) pp.219-231

Dequiedt S, Thioulouse J, Jolivet C, Savy NPA, Lelievre M, Maron P-A, Martin M, Chemidlin Prévost-Bouré N, Toutain B, Arrouays D, Lemanceau P, Ranjard L
Biogeographical patterns of soil bacterial communities, Environmental Microbiology Reports, vol. 1(4) pp.251-255

Descamps S, Boutin S, McAdam A-G, Berteaux D, Gaillard J-M
Survival costs of reproduction vary with age in North American red squirrels, Proceedings of the Royal Society B-Biological Sciences, vol. 276(1659) pp.1129-1135

Desmonts D, Fritz H, Cornulier T, Maheo R
Rise in human activities on the mudflats and Brent Geese textit(Branta bernicla) wintering distribution in relation to textotZostera spp. beds: a 30-year study, Journal of Ornithology, vol. 150 pp.733-742

Desouhant E, Navel S, Foubert E, Fischbein D, Théry M, Bernstein C
What matters in the associative learning of visual cues in foraging parasitoid wasps: colour or brightness?, Animal Cognition, vol. pp.1-9

Devillard S, Bray Y
Assessing the effect on survival of natal dispersal using multistate capture-recapture models, Ecology, vol. 90(10) pp.2902-2912

Devillard S, Jombart T, Pontier D
Revealing cryptic genetic structuring in an urban population of stray cats (textit Felis silvestris catus, Mammalian Biology, vol. 74 pp.2902-2912

Dierkens M, Charlat S
Contribution à la connaissance des araignées des îles de la Société (Polynésie française), Revue Arachnologique, vol. 17(5) pp.63-81

Doligez B, Gustafsson L , Pärt T
Heritability of dispersal propensity in a patchy population, Proceedings of The Royal Society B-Biological Sciences, vol. 276(1668) pp.2829-2836

Doreau A, Belot Al, Bastid J, Riche B, Trescol-Biemont M-C, Ranchin B, Fabien N, Cochat P, Pouteil-Noble C, Trolliet P, Durieu I, Tebib J, Kassaï B, Ansieau S, Puisieux A, Eliaou J-F, Bonnefoy-Bérard N
Interleukin 17 acts in synergy with B cell-activating factor to influence B cell biology and the pathophysiology of systemic lupus erythematosus, Nature Immunology, vol. 10(7) pp.778-788

Dronne MA, Descombes S, Grenier E, Gilquin H
Examples of the influence of the geometry on the propagation of progressive waves, Mathematical and Computer Modelling, vol. 49(11-12) pp.2138-2144

Duplouy A, Vermenot C, Davies N, Roderick G, Hurst GDD, Charlat S
Assessing risks of Wolbachia DNA cross-specimen contamination following mass collection and ethanol storage, Molecular Ecology Resources, vol. 9(1) pp.46-50

Dupont C, Touzet S, Colin C, Deneux-Tharaux C, Rabilloud M, Clement HJ, Lansac J, BOuvier-Colle MH, Rudigoz RC, Groupe PITHAGO
Incidence and management of postpartum haemorrhage following the dissemination of guidelines in a network of 16 maternity units in France, International Journal of Obstetric Anesthesia, vol. 18(4) pp.320-327

Durant D, Desnouhes L, Fritz H, Guillemain M, Edouard N, Vial C
Size-related consumption of Scirpus maritimus tubers by greylag geese Anser anser explained by their functional response, Behavioural Processes, vol. 80(1) pp.39-45

Duret L
Mutation Patterns in the Human Genome:More Variable Than Expected, PLoS Biology, vol. 7(2) e1000028 pp.803-806

Duret L, Galtier N
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes, Annual Review of Genomics and Human Genetics, vol. 10 pp.285-311

Duret L, Galtier N
Comment on “Human-Specific Gain of Function in a Developmental Enhancer”, Science, vol. 323(5915) pp.714-715

El Abed R, Bourdon V, Huiart L, Eisinger F, Khelif A, Frenay M, Gesta P, Demange L
Molecular study of CEPBA in familial hematological malignancies, Familial Cancer, vol. 8(4) pp.581-584

Fablet M, Bueno M, Potrzebowski L, Kaessmann H
Evolutionary Origin and Functions of Retrogene Introns, Molecular Biology and Evolution, vol. 26(9) pp.2147-2156

Fablet M, Lerat E, Rebollo R, Horard B, Burlet N, Martinez S, Brasset E, Gilson E, Vaury C, Vieira C
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila, FASEB Journal, vol. 23 pp.54-62

Faye A, Krasova-Wabe T, Thiao M, Thioulouse J, Neyra M, Prin Y, Galiana A, Ndoye I, Dreyfus B, Duponnois R
Controlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia, Soil Biology & Biochemistry, vol. 41(6) pp.1245-1252

Fleurance G, Fritz H, Duncan P, Gordon J, Edouard N, Vial C
Instantaneous intake rate in horses of different body sizes: Influence of sward biomass and fibrousness, Applied Animal Behaviour Science, vol. 117 pp.84-92

Fleury F, Gibert P, Ris N, Allemand R
Ecology and Life History Evolution of Frugivorous Drosophila Parasitoids, Advances in Parasitology, vol. 70 pp.6-35

Forestier J, Dumortier J, Guillaud O, Ecochard M, Romana S, Boillot O, Lutringer D, Scoazec J-Y, Subtil F, Mion F, Julien Forestiera b Je´ roˆme Dumortierb Olivier Guillaudb Marie Ecocharda , Sabine Romana Olivier Boillotb Delphine Lutringerc Jean-Yves Scoazecd , Miona Fabien Subtile, Franc¸ ois
Noninvasive diagnosis and prognosis of liver cirrhosis: a comparison of biological scores elastometry and metabolic liver function tests, European Journal of Gastroenterology, vol. pp.1-9

Fouchet D, Le Pendu J, Guitton J-S, Guiserix M, Marchandeau S, Pontier D
Evolution of microparasites in spatially and genetically structured host populations: The example of RHDV infecting rabbits, Journal of Theoretical Biology, vol. 257(2) pp.212-227

Fouchet D, Leblanc G, Sauvage F, Guiserix M, Poulet H, Pontier D
Using Dynamic Stochastic Modelling to Estimate Population Risk Factors in Infectious Disease: The Example of FIV in 15 Cat Populations, PLoS ONE, vol. 4(10) pp.1-13

Galtier N, Duret L, Glémin S, Ranwez V
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates, Trends in Genetics, vol. 25(1) pp.1-5

Gandon S, Varaldi J, Fleury F, Rivero A
Evolution and Manipulation of Parasitoid egg load, Evolution, vol. pp.1-12

Garel M, Loison A, Jullien J-M, Dubray D, Maillard D, Gaillard J-M
Sex-specific growth in alpine chamois, Journal of Mammalogy, vol. 90(4) pp.954-960

Garel M, Solberg EJ, Sæther B-E, Grøtan V, Tufto J, Heim M
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Population Modeling and Monte Carlo Simulation Study of the Pharmacokinetics and Antituberculosis Pharmacodynamics of Rifampin in Lungs, Antimicrobial agents and chemotherapy, vol. 53(7) pp.2974-2981

Grange S, Duncan P, Gaillard JM
Poor horse traders: large mammals trade survival for reproduction during the process of feralization, Proceeding of the Royal Society, vol. 276(1663) pp.1911-1919

Granzotto A, Lopes FR, Lerat E, Vieira C, Carareto CMA
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes, BMC Evolutionary Biology, vol. 9(174) pp.95-148

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Gueguen G, Rolain JM, Zchori-Fein E, Vavre F, Fleury F, Raoult D
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Hamel S, Côté SD, Gaillard J-M, Festa-Bianchet M
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Hamel S, Gaillard J-M, Festa-Bianchet M, Côté SD
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Hamel S, Garel M, Festa-Bianchet M, Gaillard JM, Côté SD
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Jacob M, Raverot G, Jouanneau E, Borson-Chazot F, Perrin G, Rabilloud M, Tilikete C, Bernard M, Vighetto A
Predicting visual outcome after treatment of pituitary adenomas with optical coherence tomography, American Journal of Ophthalmology, vol. 147(1) pp.64-70

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Self-Perception of Quality of Life by Adolescents with Neuromuscular Diseases, Journal of Adolescent Health, vol. pp.1-7

Wang H, Boissel J-P, Nony P
Revisiting the relationship between baseline risk and risk under treatment, Emerging Themes in Epidemiology, vol. 6(1) pp.1353-1360

Zenner L, Bon G, Chauve C, Nemoz C, Lubac S
Monitoring of Dermanyssus gallinae in free-range poultry farms, Experimental and Applied Acarology, vol. 48(1-2) pp.157-166

Zrioual S, Ecochard R, Tournadre A, Lenief V, Cazalis M-A, Miossec P
Genome-Wide Comparison between IL-17A- and IL-17F- Induced Effects in Human Rheumatoid Arthritis Synoviocytes, Journal of Immunology, vol. 182(5) pp.3112-3120

book :
Fertin G, Labarre A, Rusu I, Tannier E, Vialette S
Combinatorics of Genome Rearrangements, MIT press, 2009

incollection :
Charlat S, Rigaud T
Manipulation de la sex ratio, article in: Biologie Evolutive, , pp.1901-1908

Charles S, Billoir E, Lopes C, Chaumot A
Matrix Population Models as Relevant Modeling Tools in Ecotoxicology, article in: Ecotoxicology Modeling, , pp.261-298

Duponnois R, Hafidi M, Thioulouse J, Galiana A, Ouahmane L, Dreyfus B, Prin Y
Monitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas, article in: Microbial Strategies for Crop Improvement, Springer-Verlag Berlin, pp.443-450

Varaldi J, Patot S, Nardin M, Gandon S
A Virus-Shaping Reproductive Strategy in a Drosophila Parasitoid, article in: Advances in Parasitology, Elsevier, pp.334-359

Vavre F, Mouton L, Pannebakker BA
Drosophila–Parasitoid Communities as Model Systems for Host–Wolbachia Interactions, article in: Advances in parasitology, Elsevier, pp.229-331

Vavre F, Vautrin E, Gueguen G, Mouton L, Fleury F
Infecciones múltiples regulación y evolución de poblaciones simbióticas, article in: Relaciones entre organismos en los sistemas hospederos-parasitoides simbiontes, , pp.197-226

inproceedings :
Deniélou Y-P, Boyer F, Viari A, Sagot M-F
Multiple Alignment of Biological Networks: A Flexible Approach, 20th Annual Symposium on Combinatorial Pattern Matching, , vol. 5577 pp.263-273

Ouangraoua A, Boyer F, McPherson A, Tannier E, Chauve C
Prediction of Contiguous Regions in the Amniote Ancestral Genome, 5th International Symposium on Bioinformatics Research and Applications, Springer, Lecture Notes in Bioinformatics, vol. 5542 pp.173-185

Tannier E
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods, Proceedings of RECOMB Comparative Genomics, Springer, Lecture notes in Bioinformatics, vol. 5817 pp.1-12

misc :
Bailly-Bechet M, Braunstein A, Zecchina R
A Prize-Collecting Steiner Tree Approach for Transduction Network Inference, , vol. pp.83-95

Cetre JC
Qualité de l`air au bloc opératoire, , vol. pp.768-776

phdthesis :
Braga M
L`espace de solutions du tri par inversions et son utilisation dans l`analyse de réarrangements de génomes, , 2009

Cottret L
Analyse systéemique de la symbiose intracellulaire : évolution et organisation du réseau métabolique des endocytobiotes, , 2009

Gout J-F
Les singularités du génome de la paramécie : un bon révélateur des mécanismes évolutifs à l’oeuvre chez les êtres vivants, , 2009

Guillet C
Evolution des Ilots CpG chez les Primates, , 2009

Kremer N
Évolution de la dépendance dans les symbioses à Wolbachia : étude du genre Asobara textit(Hymenoptera : Braconidae), , 2009

Vavre F
Evolution des interactions symbiotiques chez les insectes : A quel niveau de sélection se vouer ?, , 2009

Voirin N
Analyse et Modélisation de la Transmission de la Grippe Nosocomiale, , 2009

252 articles

article :
Achard A, Guérin-Faublée V, Pichereau V, Villers C, Leclercq R
Emergence of Macrolide Resistance Gene mph(B) in Streptococcus uberis and Cooperative Effects with rdmC-Like Gene, Antimicrobial Agents and Chemotherapy, vol. 52 pp.2767-2770

Acuna V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot M-F, Stougie L
Modes and Cuts in Metabolic Networks:Complexity and Algorithms, BioSystems, vol. 95 - n°1 pp.51-60

Afonso E, Lemoine M, Poulle M-L, Ravat M-C, Romand S, Thulliez P, Villena I, Aubert D, Riche B, Rabilloud M, Gilot-Fromont E
Spatial distribution of soil contamination by Toxoplasma gondii in relation to cat defecation behaviour in an urban area, International Journal for Parasitology, vol. 38 pp.1017-1023

Allali J, Sagot M-F
A multiple layer model to compare RNA secondary structures, Software-practice and experience, vol. 38 pp.775-792

Allemand R, De Laclos E, Buche B, Ponel P
Anobiidae nouveaux ou méconnus de la faune de France (3e note) (Coleoptera), Bulletin de la Société entomologique de France, vol. 113(3) pp.397-402

Amoutzias GD, Véron AS, Weiner J, Robinson-Rechavi M, Bornberg-Bauer M, Oliver SG, Robertson DL
One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity, Molecular Biology and Evolution, vol. 24(3) pp.827-835

Arama V, Vladareanu R, Mihailescu R, Streinu Cercel A, Mihai C, Hristea A, Losipenco M, Arama SS, Rabilloud M
Seroprevalence and risk factors associated with herpes simplex virus infection among pregnant women, Journal of perinatal medicine, vol. 36(3) pp.206-212

Arigon A-M, Perrière G, Gouy M
Automatic identification of large collections of protein-coding or rRNA sequences, Biochimie, vol. 90 pp.609-614

Augot D, Sauvage F, Boue F, Bouloy M, Artois M, Demerson J-M, Combes B, Coudrier D, Zeller H, Cliquet F, Pontier D
Spatial and temporal patterning of bank vole demography and the epidemiology of the Puumala hantavirus in northeastern France, Epidemiology and Infection, vol. 136(12) pp.1638-1643

Awan GA, Festa-Bianchet M, Gaillard J-M
Early survival of Punjab urial, Canadian Journal of Zoology, vol. 86 pp.394-399

Bacchetta J, Cochat P, Villard F, Astier M, Vial T, Dubourg L, Hadj-Aissa A, Kassaï B
Hypersensitivity to inulin : a rare and mostly benign event, American Journal of Kidney Diseases, vol. 52(3) pp.632-633

Bacchetta J, Villard F, Vial T, Dubourg L, Bouvier R, Kassaï B, Cochat P
‘Renal hypersensitivity’ to inulin and IgA nephropathy, Pediatric Nephrology, vol. 23(10) pp.1883-1885

Bahi-Jaber N, Fouchet D, Pontier D
Stochastic extinction and the selection of the transmission mode in microparasites, Journal of the Royal Society Interface, vol. 5 pp.1031-1039

Baillif S, Ecochard R, Casoli E, Freney J, Burillon C, Kodjikian L
Adherence and kinetics of biofilm formation of Staphylococcus epidermidis to different types of intraocular lenses under dynamic flow conditions, Journal of cataract and refractive surgery, vol. 34(1) pp.153-158

Bailly-Bechet M, Kerszberg M, Gaill F, Pradillon F
A modeling approach of the influence of local hydrodynamic conditions on larval dispersal at hydrothermal vents, Journal of Theoretical Biology, vol. 255 pp.320-331

Basille M, Calenge C, Marboutin E, Andersen R, Gaillard J-M
Assessing habitat selection using multivariate statistics: some refinements of the ecological-niche factor analysis, Ecological Modelling, vol. 211 pp.233-240

Bejan-Angoulvant T, Bouvier A-M, Bossard N, Belot A, Jooste V, Launoy G, Remontet L
Hazard regression model and cure rate model in colon cancer relative survival trends: are they telling the same story?, European Journal of Epidemiology, vol. 23 pp.251-259

Bel-Venner MC, Dray S, Allainé D, Menu F, Venner S
Unexpected male choosiness for mates in a spider, Proceedings of The Royal Society B-Biological Sciences, vol. 275 pp.77-82

Belot A, Grosclaude P, Bossard N, Jougla E, Benhamou E, Delafosse P, Guizard A-V, Molinie F, Danzon A, Bara S, Bouvier A-M, Trétarre B, Binder-Foucard F, Colonna M, Daubisse L, Hédelin L, Launoy G, Le Stang N, Maynadié M, Monnereau A, Troussard X, Faivre J, Collignon A, anoray I, Arveux P, Buemi A, Raverdy N, Schvartz C, Bovet M, Chérié-Challine L, Estève J, Remontet L, Velten M
Cancer incidence and mortality in France over the period 1980-2005, Revue d Epidemiologie et de santé publique, vol. 56(3) pp.159-175

Ben-Ami F, Mouton L, Ebert D
The effects of multiple infections on the expression and evolution of virulence in a daphnia-endoparasite system, Evolution, vol. 62-7 pp.1700-1711

Benayoun B-A, Caburet S, Dipietromaria A, Bailly-Bechet M, Batista F, Fellous M, Vaiman D, Veitia R-A
The identification and characterization of a FOXL2 response element provides insights into the pathogenesis of mutant alleles, Human Molecular Genetics, vol. 17 pp.3118-3127

Berthiller J, Straif K, Boniol M, Voirin N, Benhaïm-Luzon V, Ayoub WA, Dari I, Laouamri S, Hamdi-Cherif M, Bartal M, Ben Ayed F, Sasco AJ
Cannabis Smoking and Risk of Lung Cancer in Men A Pooled Analysis of Three Studies in Maghreb, Journal of Thoracic Oncology, vol. 3 pp.1398-1403

Biémont C
Dossier Évolution et créationnisme. Les éléments transposables : une force évolutive majeure, Natures Sciences Sociétés, vol. 16 pp.41-43

Biémont C
Within-species variation in genome size, Heredity, vol. 101 pp.297-298

Billoir E, Delignette-Muller M-L, Péry A-RR, Charles S
A Bayesian Approach to Analyzing Ecotoxicological Data, Environmental Science & Technology, vol. 42 pp.8978-8984

Billoir E, Delignette-Muller M-L, Péry A-RR, Geffard O, Charles S
Statistical cautions when estimating DEBtox parameters, Journal of Theoretical Biology, vol. 254 pp.55-64

Bize P, Devevey G, Monaghan P, Doligez B, Christe P
Fecundity and survival in relation to resistance to oxidative stress in a free-living bird, Ecology, vol. 89(8) pp.2584-2593

Blanchard P, Fritz H
Seasonal variation in rumination parameters of free-ranging impalas (Aepyceros melampus), Wildlife biology, vol. 14(3) pp.372-378

Blanchard P, Sabatier R, Fritz H
Within-group spatial position and vigilance: a role also for competition? The case of impalas (Aepyceros melampus) with a controlled food supply, Behavioral ecology and sociobiology, vol. 62 pp.1863-1868

Boillot C, Bazin C, Tissot-Guerraz F, Droguet J, Perraude M, Cetre J-C, Trepo D, Perrodina Y
Daily physicochemical microbiological and ecotoxicological fluctuations of a hospital effluent according to technical and care activities, Science of the total environment, vol. 403 (1-3) pp.113-129

Boissel J-P, Cucherat M, Nonyc P, Chabaud S, Gueyffier F, Wright JM, Lièvre M, Leizorovicz A
New insights on the relation between untreated and treated outcomes for a given therapy effect model is not necessarily linear, Journal of Clinical Epidemiology, vol. 61 pp.301-307

Boissel J-P, Ribba B , Grenier E, Chapuisat G, Dronne MA
Modelling methodology in physiopathology, Progress in Biophysics & Molecular Biology, vol. 97 pp.28-39

Bougeard G, Sesboué R, Desurmont S, Berthet P, Bonadona V, Buecher B, Caron O, Colas C, Collonge-Rame M-A, Delnatte C, Dugast C, Fricker J-P, Gauthier-Villars M, Gesta P, Jonveaux P, Lasset C, Leheup B, Longy M, Nogue C
Molecular basis of the Li-Fraumeni syndrome: an update from the French LFS families, Journal of Medical Genetic, vol. 45 pp.535-538

Bourgoin G, Garel M, Van Moorter B, Dubray D, Maillard D, Marty E, Gaillard J-M
Determinants of seasonal variation in activity patterns of mouflon, Canadian Journal of Zoology, vol. 86 pp.1410-1418

Bourguignon L, Goutelle S, Bouniot P, Guillermet A, Burdin de Saint-Martin J, Maire P, Ducher M
Pharmacocinétique de la teicoplanine chez le sujet âgé : construction d’un modèle pour le suivi thérapeutique, Journal de Pharmacie Clinique, vol. 27 n°3 pp.189-194

Boussageon R, Gueyffier F, Bejan-Angoulvant T, Felden-Dominiak G
Critique du modèle additif de l`essai clinique randomisé, Thérapie, vol. 63(1) pp.29-35

Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M
Parallel adaptations to high temperatures in the Archaean eon, Nature, vol. 456 pp.942-945

Boussau B, Guéguen L, Gouy M
Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria, BMC Evolutionary Biology, vol. 8 pp.272-272

Bouysset M, Coury-Lucas F, Sprunck N, Nemoz C, Damiano J, Tebib J
Modifications de la pente talienne et de la pente calcanéenne dans la polyarthrite rhumatoïde, Medecine et Chirurgie du Pied, vol. 24 pp.126-129

Braga MDV, Sagot M-F, Scornavacca C, Tannier E
Exploring the Solution Space of Sorting by Reversals with Experiments and an Application to Evolution, IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 5 - n°3 pp.348-356

Brûlet A, Nicolle M-C, Giard M, Nicolini F-E, Michallet M
Fatal Nosocomial Legionella pneumophila Infection Due to Exposure to Contaminated Water From a Washbasin in a Hematology Unit, Infection control and hospital epidemiology, vol. 29(11) pp.1091-1093

Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P
Mesophilic crenarchaeota: proposal for a third archaeal phylum the Thaumarchaeota, Nature Reviews Microbiology, vol. 6 pp.245-252

Cadoret J-C, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville Q, Prioleau M-N
Genome-wide studies highlight indirect links between human replication origins and gene regulation, Proceedings of The National Academy of Sciences of The United States of America, vol. 105-41 pp.15837-15842

Calenge C, Basille M
A general framework for the statistical exploration of the ecological niche, Journal of Thoretical Biology, vol. 252(4) pp.674-685

Calenge C, Darmon G, Basille M, Loison A, Jullien J-M
The factorial decomposition of the mahalanobis distances in habitat selection studies, Ecology, vol. 89 pp.555-566

Carletto J, Gueguen G, Fleury F, Vanlerberghe-Masutti F
Screening the bacterial endosymbiotic community of sap-feeding insects by terminal-restriction fragment length polymorphism analysis, Entomologia Experimentalis et Applicata, vol. pp.1-9

Catenoix H, Mauguière F, Guénot M, Ryvlin P, Bissery A, Sindou M, Isnard J
SEEG-guided thermocoagulations A palliative treatment of nonoperable partial epilepsies, Neurology, vol. 71-21 pp.1729-1726

Chamaille-Jammes S, Fritz H, Valeix M, Murindagomo F, Clobert J
Resource variability aggregation and direct density dependence in an open context: the local regulation of an African elephant population, Journal of Animal Ecology, vol. 77 pp.135-144

Chapuisat G, Dronne MA, Grenier E, Hommel M, Gilquin H, Boissel J-P
A global phenomenological model of ischemic stroke with stress on spreading depressions, Progress in Biophysics & Molecular Biology, vol. 97 pp.4-27

Charles S, Subtil F, Kielbassa J, Pont D
An individual-based model to describe a bullhead population dynamics including temperature variations, Ecological Modelling, vol. 215 pp.377-392

Chauve C, Tannier E
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes, PLoS Computational Biology, vol. 4 pp.391-410

Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan M, Kempenaers B, Allainé D
The genetic similarity between pair members influences the frequency of extrapair paternity in alpine marmots, Animal Behavior, vol. 76 pp.87-95

Colonna M, Bossard N, Mitton N, Remontet L, Belot A, Delafosse P, Grosclaude P
Some interpretation of regional estimates of the incidence of cancer in France over the period 1980-2005, Revue d Epidemiologie et de santé publique, vol. 56(6) pp.434-440

Cordaux R, Pichon S, Ling A, Perez P, Delaunay C, Vavre F, Bouchon D, Greve P
Intense Transpositional Activity of Insertion Sequences in an Ancient Obligate Endosymbiont, Molecular Biology and Evolution, vol. 25(9) pp.1889-1896

Couté Y, Kindbeiter K, Belin S, Dieckmann R, Duret L, Bezin L, Sanchez J-C, Diaz J-J
ISG20L2 a novel vertebrate nucleolar exoribonuclease involved in ribosome biogenesis, Molecular & cellular proteomics, vol. 7 pp.546-559

Covain R, Dray S, Fisch-Muller S, Montoya-Burgos JI
Assessing phylogenetic dependence of morphological traits using co-inertia prior to investigate character evolution in Loricariinae catfishes, Molecular Phylogenetics and evolution, vol. 46 pp.986-1002

Danchin N, Coste P, Ferrières J, Steg P-G, Cottin Y, Blanchard D, Belle L, Ritz B, Kirkorian G, Angioi M, Sans P, Charbonnier B, Eltchaninoff H, Guéret P, Khalife K, Asseman P, Puel J, Goldstein P, Cambou J-P, Tabassome S
Comparison of Thrombolysis Followed by Broad Use of Percutaneous Coronary Intervention With Primary Percutaneous Coronary Intervention for ST-Segment-Elevation Acute Myocardial Infarction, Circulation, vol. 118 pp.268-276

Daudin J-J, Picard F, Robin S
A mixture model for random graphs, Statistics and Computing, vol. 18 pp.173-183

David S, Abbas-Chorfa F, Vanhems P, Vallin B, Iwaz J, Ecochard R
Promotion of WHO Feeding Recommendations : A model Evaluating the Effects on HIV-Free Survival in African Chrildren, Journal of human lactation, vol. 24(2) pp.2239-2244

De Beaudrap P, Etard J-F, Ecochard R, Diouf A, Dieng AB, Cilote V, Ndiaye I, Guèye NFN, Guèye PM , Sow PS, Mboup S, Ndoye I, Delaporte E
Change over time of mortality predictors after HAART initiation in a Senegalese cohort, European Journal of Epidemiology, vol. 23(3) pp.227-234

De Beaudrap P, Etard J-F, Guèye FN, Guèye M, Landman R, Girard P-M, Sow PPS, Ndoye I, Delaporte E
Long-Term Efficacy and Tolerance of Efavirenz- and Nevirapine-Containing Regimens in Adult HIV Type 1 Senegalese Patients, AIDS Research and Human Retroviruses, vol. 24(6) pp.753-760

De Beaudrap P, Rouet F, Fassinou P, Kouakoussui A, Mercier S, Ecochard R, Msellati P
CD4 Cell Response Before and After HAART Initiation According to Viral Load and Growth Indicators in HIV-1-Infected Children in Abidjan Côte d’Ivoire, JAIDS-Journal of Acquired Immune Deficiency Syndromes, vol. 49 pp.70-76

Delignette-Muller M-L, Cornu M
Quantitative risk assessment for Escherichia coli O157:H7 in frozen ground beef patties consumed by young children in French households, International Journal of Food Microbiology, vol. 128 pp.77-84

Deloger M, El Karoui M, Petit M-A
A Genomic Distance Based on MUMIndicates Discontinuity Between Most Bacterial Species and Genera, Journal of Bacteriology, vol. 191(1) pp.91-99

Descamps S, Boutin S, Berteaux D, Gaillard J-M
Age-specific variation in survival reproductive success and offspring quality in red squirrels : evidence of senescence, Oikos, vol. 117 pp.1406-1416

Descamps S, Boutin S, Berteaux D, McAdam AG, Gaillard J-M
Cohort effects in red squirrels: the influence of density food abundance and temperature on future survival and reproductive success, Journal of Animal Ecology, vol. 77 pp.305-314

Descotes F, Riche B, Saez S, De Laroche G, Datchary J, Roy P, André P, Bobin J-Y
Plasminogen Activator Inhibitor Type 1 is the Most Significant of the Usual Tissue Prognostic Factors in Node-Negative Breast Ductal Adenocarcinoma Independent of Urokinase-Type Plasminogen Activator, Clinical Breast Cancer, vol. 8(2) pp.168-177

Devillard S, Aubineau J, Berger F, Léonard Y, Roobrouck A, Marchandeau S
Home range of the European rabbit (Oryctolagus cuniculus) in three contrasting French populations, Mammalian Biology, vol. 73 pp.128-137

Devillers H, Lobry JR, Menu F
An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations, Journal of Theoretical Biology, vol. 255 pp.307-315

Doligez B, Berthouly A, Doligez D, Tanner M, Saladin V, Bonfils D, Richner H
Spatial scale of local breeding habitat quality and adjustment of breeding decisions, Ecology, vol. 89 pp.1436-1444

Doligez B, Pärt T
Estimating fitness consequences of dispersal:a road to know-where? Non-random dispersal and the underestimation of dispersers fitness, Journal of Animal Ecology, vol. 77 pp.1199-1211

Dray S
On the number of principal components: A test of dimensionality based on measurements of similarity between matrices, Computational Statistics & Data Analysis, vol. 52 pp.2228-2237

Dray S , Saïd S, Débias F
Spatial ordination of vegetation data using a generalization of Wartenberg’s multivariate spatial correlation, Journal of Vegetation Science, vol. 19 pp.45-56

Dray S, Legendre P
Testing the species traits-environment relationships : the fourth-corner problem revisited, Ecology, vol. 89 pp.3400-3412

Dronne MA, Grenier E , Chapuisat G, Hommel M, Boissel J-P
A modelling approach to explore some hypotheses of the failure of neuroprotective trials in ischemic stroke patients, Progress in Biophysics & Molecular Biology, vol. 97 pp.60-78

Duclos A , Voirin N
High quality evidence from vaccine field studies is needed to recommend influenza vaccination of hospital staff in the acute care setting, Vaccine, vol. 26 pp.6741-6742

Dufour A-B, Lobry JR
From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals, Biométrie Humaine et Anthropologie, vol. 26 pp.33-39

Dumitrescu O, Tristan A, Meugnier H, Bes M, Gouy M, Etienne J, Lina G
Polymorphism of the Staphylococcus aureus Panton-Valentine LeukocidinGenes and Its Possible Link with the Fitness of Community-Associated Methicillin-Resistant S. aureus, Journal of infectious diseases, vol. 198(5) pp.792-794

Durant D, Tichit M, Fritz H, Kerneïs E
Field occupancy by breeding lapwings Vanellus vanellus and redshanks Tringa totanus in agricultural wet grasslands, Agriculture Ecosystems & Environment, vol. 128 pp.146-150

Durant D, Tichit M, Kerneïs E, Fritz H
Management of agricultural wet grasslands for breeding waders: integrating ecological and livestock system perspectives a review, Biodiversity and Conservation, vol. 17(9) pp.2275-2295

Duret L
Neutral Theory: The Null Hypothesis of Molecular Evolution, Nature Education, vol. 1 pp.803-806

Duret L, Arndt PF
The Impact of Recombination on Nucleotide Substitutions in the Human Genome, PLoS Genetics, vol. 4 pp.1-19

Duret L, Cohen J, Jubin C, Dessen P, Gout J-F, Mousset S, Aury J-M, Jaillon O, Noël B, Arnaiz O, Bétermier M, Wincker P, Meyer E, Sperling L
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline, Genome Research, vol. 18 pp.585-596

Dutheil J, Boussau B
Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs, BMC Evolutionary Biology, vol. 8:255 pp.31-42

El-Cheikh J, Michallet M, Nagler A, de Lavallade H , Nicolini FE, Shimoni A, Faucher C, Sobh M, Revesz D, Hardan I, Fürst S, Blaise D, Mohty M
High response rate and improved graft-versus-host disease following bortezomib as salvage therapy after reduced intensity conditioning allogeneic stem cell transplantation for multiple myeloma, Haematologica-The Hematology Journal, vol. 93 pp.455-458

Esnault C, Boulesteix M, Duchemin JB, Koffi AA, Chandre F, Dabiré R, Robert V, Simard F, Tripet F, Donnelly MJ, Fontenille D, Biémont C
High Genetic Differentiation between the M and S Molecular Forms of Anopheles gambiae in Africa, PLoS One, vol. 3 pp.1-7

Ezard THG, Gaillard J-M, Crawley MJ, Coulson T
Habitat Dependence and Correlations between Elasticities of Long-Term Growth Rates, The American Naturalist, vol. 172 pp.424-430

Focardi S, Gaillard J-M, Ronchi F, Rossi S
Survival of wild boars in a variable environment : unexpected life-history variation in unusual ungulate, Journal of Mammalogy, vol. 89 pp.1113-1123

Fouchet D, Guitton J-S, Marchandeau S, Pontier D
Impact of myxomatosis in relation to local persistence in wild rabbit populations: the role of waning immunity and the reproductive period, Journal of Theoretical Biology, vol. 250(4) pp.593-605

Fouchet D, O’Brien J, Pontier D
Visiting Sick People: Is It Really Detrimental to Our Health?, PLoS One, vol. 3 pp.81-89

Fouchet D, Regoes R
A Population Dynamics Analysis of the Interaction between Adaptive Regulatory T Cells and Antigen Presenting Cells, PLoS ONE, vol. 3() pp.1-9

Fremaux B, Prigent-Combaret C, Delignette-Muller M-L, Mallen B, Dothal M, Gleizal A, Vernozy-Rozand C
Persistence of Shiga toxin-producing Escherichia coli O26 in various manure-amended soil types, Journal of Applied Microbiology, vol. 104 pp.296-304

Gaidet N, Gaillard JM
Density-dependent body condition and recruitment in a tropical ungulate, Canadian journal of zoology, vol. 86(1) pp.24-32

Gaillard J-M, Hewison AJM, Kjellander P, Pettorelli N, Bonenfant C, Van Moorter B, Liberg O, Andren H, Van Laere G, Klein F, Angibault J-M, Coulon A, Vanpé C
Population density and sex do not influence fine-scale natal dispersal in roe deer, Proceedings of The Royal Society B-Biological Sciences, vol. 275 pp.2025-2030

Gaillard J-M, Bonenfant C
Vertebrate Ageing: An Evolutionary Process with a Genetic Basis?, Current Biology, vol. 18 pp.R130-R131

Galdet N, Gaillard J-M
Density-dependent body condition and recruitment in a tropical ungulate, Canadian Journal of Zoology, vol. 86 pp.24-32

Galtier N, Daubin V
Dealing with incongruence in phylogenomic analyses, Philosophical transactions of the royal society B-Biological Sciences, vol. pp.1233-1241

Giard M, Lepape A , Allaouchiche B, Guerin C, Lehot JJ, Robert MO, Fournier G, Jacques D, Chassard D, Gueugniaud PY, Artru F, Petit P, Robert D, Mohammedi I, Girard R, Cetre J-C, Nicolle MC, Grando J, Fabry J, Vanhems P
Early- and late-onset ventilator-associated pneumonia acquired in the intensive care unit: comparison of risk factors, Journal of Critical Care, vol. 23 pp.27-33

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Van Moorter B, Gaillard J-M, Hewison AJM, Said S, Coulon A, Delorme D, Widmer O, Cargnelutti B, Angibault JM
Evidence for exploration behaviour in young roe deer (Capreolus capreolus) prior to dispersal, Ecology & Evolution, vol. 20 pp.1-15

Vanhems P, Baratin D, Voirin N, Savey A, Caillat-Vallet E, Metzger M-H, Lepape A
Reduction of urinary tract infections acquired in an intensive care unit during a 10-year surveillance program, European Journal of Epidemiology, vol. 23(9) pp.641-645

Vautrin E, Genieys S, Charles S, Vavre F
Do vertically transmitted symbionts co-existing in a single host compete or cooperate? A modelling approach, Journal of Evolutionary Biology, vol. 21 pp.145-161

Véron AS, Kaufmann K, Bornberg-Bauer E
Evidence of Interaction Network Evolution by Whole-Genome Duplications: A Case Study in MADS-Box Proteins, Molecular Biology and Evolution, vol. 24(3) pp.670-678

Veyre-Goulet S, Mercier C, Robin O, Guerin C
Recent Human Sexual Dimorphism Study Using Cephalometric Plots on Lateral Teleradiography and Discriminant Function Analysis, Journal of Forensic Sciences, vol. 53 - N°4 pp.670-678

Villar E, Frimat L, Ecochard R, Labeeuw M, Vincent F, Wrobleski I, Danel V
Specificities of the methodology of survival analysis in dialysis patients, Néphrologie & Thérapeutique, vol. 4(7) pp.553-561

Voirin N, Routy J-P, Smith D, Baratin D, Trepo C, Cotte L, Touraine J-L, Livrozet J-M, Cooper DA, Ritter J, Andre P, Vanhems P
Effect of early initiation of highly active antiretroviral therapy on CD4 cell count and HIV-RNA viral load trendswithin 24 months of the onset of acute retroviral syndrome, HIV Medicine, vol. 9 pp.440-444

Weladji RB, Loison A, Gaillard J-M, Holand O, Mysterud A, Yoccoz NG, Nieminen M, Stenseth NC
Heterogeneity in individual quality overrides costs of reproduction in female reindeer, Oecologia, vol. 156 pp.237-247

Zanghi H, Ambroise C, Miele V
Fast online graph clustering via Erdos–Rényimixture, Pattern Recognition, vol. 41 pp.3592-3599

book :
Lacroix V
Identification de motifs dans les réseaux métaboliques, , 2008

incollection :
Allemand R, Dalmon J, Pupier R, Rozier Y, Marengo V
Coléoptères de Rhônes-Alpes, article in: Musée des Confluences (Lyon), , pp.273-285

Bernstein C, Jervis M
Food-searching in paritoids: the dilemma of choosing between `immediate` or future fitness gains, article in: Behavioral Ecology of Insect Parasitoids, Blackwell Publishing, pp.129-171

Bonsall MB, Bernstein C
Linking foraging and dynamics, article in: Behavioral Ecology of Insect Parasitoids, Blackwell Publishing, pp.292-314

Boulinier T, Mariette M, Doligez B , Danchin E
Choosing where to breed - Breeding habitat choice, article in: Behavioural Ecology: An Evolutionary Perspective on Behaviour, Oxford University Press., pp.285-322

Doligez B, Boulinier T
Habitat Selection and Habitat Suitability Preferences, article in: Encyclopedia of Ecology, , pp.1810-1830

Gaillard J-M, Coulson T, Festa-Bianchet M
Recruitment, article in: Encyclopedia of Ecology, , pp.2982-2986

Gaillard J-M, Duncan P, Van Wieren SE, Loison A, Klein F, Maillard D
Managing large herbivores in theory and practice: Is the game the same for browsing and grazing species?, article in: The ecology of browsing and grazing, Springer, pp.293-307

Galtier N, Duret L
Biased Gene Conversion and its Impact on Human Genome Evolution, article in: Encyclopedia of life sciences, , pp.273-277

Sauvage F , Fouchet D, Pontier D
Des souris et des hommes l’étude des systèmes à hantavirus, article in: Introduction à l`épidémiologie intégrative des maladies contagieuses, , pp.413-456

Tannier E
Sorting Signed Permutations by Reversal (Reversal Sequence) 2004; Tannier Sagot, article in: Encyclopedia of algorithms, Springer, pp.860-863

Van Alphen JJM, Bernstein C
Information acquisition information processing and patch time allocation in insect parasitoids, article in: Behavioral Ecology of Insect Parasitoids, Blackwell Publishing, pp.172-192

Vavre F, Kremer N, Pannebakker BA, Loppin B, Mavingui P
Is symbiosis evolution influenced by the pleiotropic role of programmed cell death in immunity an development ?, article in: Insect Symbiosis, CRC Press Boca Raton, pp.57-76

inproceedings :
Adi SS, Braga MDV, Fernandes CG, Ferreira CE, Martinez FV, Sagot M-F, Stefanes MA, Tjandraatmadja C, Wakabayashi Y
Repetition-free longest common subsequence, IV Latin-American Algorithms Graphs and Optimization Symposium, Electronic Notes in Discrete Mathematics, vol. 30 pp.243-248

Bérard S, Chateau A, Chauve C, Paul C, Tannier E
Perfect DCJ Rearrangement, RECOMB-CG 2008, Springer-Verlag, Lecture Notes in Bioinformatics, vol. 5267 pp.159-168

Cottret L, Milreu P-V, Acuna V, Marchetti-Spaccamela A, Viduani-Martinez F, Sagot M-F, Stougie L
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network, WABI 2008, Springer-Verlag, Lecture Notes in Bioinformatics, vol. LNBI 5251 pp.233-244

Lacroix V, Sammeth M, Guigo R, Bergeron A
Exact Transcriptome Reconstruction from Short Sequence Reads, Proceeding of WABI`08, , Lecture Notes in Bioinformatics, vol. 5251 pp.50-63

Lenne R, Solnon C, Stützle T, Tannier E, Birattari M
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem, EvoCOP 2008, Springer Verlag, Lecture Notes in Computer Science, vol. 4972 pp.266-276

Nuel G, Miele V, Slaoui Y, Rebai A
Taking into account missing genotypes and errors in Family Based Association Testing using an Expectation-Maximization framework, ISB 2008, , International Symposium on Biotechnology pp.508-514

Tannier E, Zheng C, Sankoff D
Multichromosomal Genome Median and Halving Problems, Proceedings of WABI`08, Springer-Verlag, Lecture notes in Bioinformatics, vol. 5251 pp.1-13

misc :
Boyer F, Chauve C, Tannier E
Prédiction de synténies dans le génome ancestral des amniotes, , vol. pp.141-148

Kahn D, Rezvoy C, Vivien F
Parallel large scale inference of protein domain families, , vol. pp.3011-3018

Nuel G, Slaoui Y, Miele V
Libfbat: a C++ library for family based association testing, , vol. pp.508-514

Peterlongo P, Allali J, Sagot M-F
Indexing gapped-factors using a tree, , vol. 19-1 pp.79-87

Proux D, Segond F, Gerbier S, Metzger M-H
Addressing risk assessment for patient safety in hospitals through information extraction in medical reports, , vol. 288 pp.230-239

phdthesis :
Billoir E
Modélisation dynamique et inférence bayésienne pour l`analyse de données en écotoxicologie, , 2008

Bourgoin G
Etude des variations spatio-temporelles de l’activité et de l’utilisation des ressources par les herbivores. L’exemple du mouflon méditerranéen (Ovis gmelini musimon x Ovis sp.) et du chevreuil (Capreolus capreolus), , 2008

Jombart T
Analyses multivariées de marqueurs génétiques : développements méthodologiques applications et extensions., , 2008

Lemaitre C
Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure, , 2008

Necşulea A
Etude des patrons d`évolution asymétrique dans les séquences d`ADN, , 2008

Rajon E
Adaptation locale et optimalité des stratégies de dormance en environnement imprévisible : Développements théoriques et validation expérimentale chez le balanin de la chataîgne Curculio Elephas, , 2008

Vautrin E
Les infections multiples dans les symbioses insectes / bactéries : évolution intra-hôte et conséquences populationnelles., , 2008

techreport :
Bourgoin G, Garel M, Dubray D, Maillard D, Marty E, Gaillard J-M
Échecs de localisation des colliers GPS :une source d’erreurs à maîtriser, 2008

216 articles

article :
Abby S, Daubin V
Comparative genomics and the evolution of prokaryotes, Trends in Microbiology, vol. 15 pp.135-141

Afonso E, Poulle M-L, Lemoine M, Villena I, Aubert D, Gilot-Fromont E
Prevalence of Toxoplasma Gondii in small mammals from the ardennes region France, Folia Parasitologica, vol. 54 pp.313-314

Afonso E, Thulliez P, Pontier D, Gilot-Fromont E
Toxoplasmosis in prey species and consequences for prevalence in feral cats: not all prey are equal, Parasitology, vol. 134 pp.1963-1971

Alarcon F, Lasset C, Carayol J, Bonadona V, Perdry H, Desseigne F, Wang Q, Bonaïti-Pellié C
Estimating cancer risk in HNPCC by the GRL method, European Journal of Human Genetics, vol. 15 pp.831-836

Amsallem E, Kasparian C, Cucherat M, Chabaud S, Haugh MC, Boissel J-P, Nony P
Evaluation of two evidence-based knowledge transfer interventions for physicians. A cluster randomized controlled factorial design trial: the CardioDAS study, Fundamental & Clinical Pharmacology, vol. 21 pp.631-641

Andersen R, Karlsen J, Austmo BL, Odden J, Linnell JDC, Gaillard J-M
Selectivity of Eurasian lynx Lynx lynx and recreational hunters for age sex and body condition in roe deer Capreolus capreolus, Wildlife Biology, vol. 13 pp.467-474

Andrianjaka Z, Bally R, Lepage M, Thioulouse J, Comte G, Duponnois R
Biological control of Striga hermonthica by Cubitermes termite mound powder amendment in sorghum culture, Applied Soil Ecology, vol. 37 pp.175-183

Antoniou AC, Sinilnikova OM , Simard J , Leone M, Dumont M , Neuhausen SL, Struewing JP, Stoppa-Lyonnet D, Barjhoux L, Hughes DJ, Coupier I, Belotti M , Lasset C, Bonadona V, Bignon YJ, Rebbeck TR, Wagner T, Lynch HT, Domchek SM, Nathanson KL, Garber JE, Weitzel J, Narod SA, Tomlinson G , Olopade OI, Godwin A, Isaacs C, Jakubowska A, Lubinski J, Gronwald J, Gorski B, Byrski T, Huzarski T, Peock S, Cook M, Baynes C, Murray A, Rogers M, Daly PA, Dorkins H, Schmutzler RK, Versmold B, Engel C, Meindl A, Arnold N, Niederacher D, Deissler H, Spurdle AB, Chen X, Waddell N, Cloonan N, Kirchhoff T, Offit K, Friedman E, Kaufmann B, Laitman Y, Galore G, Rennert G, Lejbkowicz F, Raskin L, Andrulis IL, Ilyushik E, Ozcelik H, Devilee P, Vreeswijk MP, Greene MH, Prindiville SA, Osorio A, Benitez J, Zikan M, Szabo CI, Kilpivaara O, Nevanlinna H, Hamann U, Durocher F, Arason A, Couch FJ, Easton DF, Chenevix-Trench G
C Modifies Breast Cancer Risk among BRCA2 Mutation Carriers: Results from a Combined Analysis of 19 Studies, The American Society of Human Genetics, vol. 81 pp.1186-1200

Aouacheria A, Navratil V, Lopez-Perez R, Gutierrez N C, Churkin A, Barash D, Mouchiroud D, Gautier C
In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions, BMC Genomics, vol. 8 pp.1-13

Arzel C, Guillemain M, Gurd DB, EImberg J, Fritz H, Arnaud A, Pin C, Bosca F
Experimental functional response and inter-individual variation in foraging rate of teal (Anas crecca), Behavioural Processes, vol. 75 pp.66-71

Astagneau P, Grandbastien B, Olivier M, Savey A, Bernet C, Caillat-Vallet E, Branger B, Gareau N, Hommel C, Jebabli M, Parneix P, Reyreaud E, Coignard B, Lepoutre A
Surveillance des infections du site opératoire : résultats de la base de données nationale ISO-Raisin 1999-2004, Bulletin épidémiologique hebdomadaire, vol. 12-13 pp.97-100

Auclair J, Leroux D, Desseigne F, Lasset C, Saurin JC, Joly MO, Pinson S, Li Xu X, Montmain G, Ruano E, Navarro C, Puisieux A, Wang Q
Novel biallelic mutations in MSH6 and PMS2 genes: gene conversion as a likely cause of PMS2 gene inactivation, Human Mutation, vol. 28 pp.1084-1090

Bailly-Bechet M, Vergassola M, Rocha E
Causes for the intriguing presence of tRNAs in phages, Genome Research, vol. 17 pp.1486-1495

Benet T, D`Oliveira AJr, Voirin N, Livrozet JM, Cotte L, Peyramond D, Chidiac C, Touraine JL, Fabry J, Trepo C, Allard R, Vanhems P
Characteristics and survival of HIV-infected patients not screened for hepatitis C virus infection in a hospital-based cohort, Journal of Viral Hepatitis, vol. 14 pp.730-735

Benet T, Nicolle MC, Thiebaut A, Piens MA, Nicolini FE, Thomas X, Picot S, Michallet M, Vanhems P
Reduction of invasive aspergillosis incidence among immunocompromised patients after control of environnemental exposure, Clinical Infectious Diseases, vol. 45 pp.682-686

Benet T, Treny-Juhen D, Chemorin C, Morandat L, Vanhems P
Relationship between hand rub consumption and nosocomial infection rates in intensive care units, Journal of hospital infection, vol. 65 pp.182-184

Benet T, Vaillant L, Del Signore C, Crozet MN, Nicolle MC, Vanhems P
Hospitalized patients` knowledge of influenza transmission and prevention, Journal of hospital infection, vol. 67 pp.293-295

Bertrand S, Thisse B, Tavares R, Sachs L, Chaumot A, Bardet P-L, Escrivà H, Duffraisse M, Marchand O, Safi R, Thisse C, Laudet V
Unexpected Novel Relational Links Uncovered by Extensive Developmental Profiling of Nuclear Receptor Expression, PLoS Genetics, vol. 3 pp.e188-e188

Biémont C, Vieira C
Mitspieler der Evolution, Spektrum der Wissenschaft, vol. S44 pp.44-49

Billoir E, Péry ARR, Charles S
Integrating the lethal and sublethal effects of toxic compounds into the population dynamics of Daphnia magna : A combinaison of the DEBtox and matrix population models, Ecological Modelling, vol. 203 pp.207-214

Blanchard P, Fritz H
Induced or routine vigilance while foraging, Oikos, vol. 116 pp.1603-1608

Blanchard P, Hanuise N, Dano S, Weimerskirch H
Offspring sex ratio in relation to parental structural size and body condition in the long-lived wandering albatross (Diomedea exulans), Behavioral ecology and sociobiology, vol. 61 pp.767-773

Blanckenhorn WU, Dixon AFG, Fairbairn DJ, Foellmer M W, Gibert P, van der Linde K, Meier R, Nylin S, Pitnick S, Schoff C, Signorelli M , Teder T, Wiklund C
Proximate Causes of Rensch’s Rule: Does Sexual Size Dimorphism in Arthropods Result from Sex Differences in Development Time?, The American Naturalist, vol. 169 pp.245-257

Bon F, Kaplon J, Metzger M-H, Pothier P
Evaluation de sept réactifs d’immunochromatographie pour détecter les rotavirus humains dans les selles, Pathologie Biologie, vol. 55 pp.149-153

Bonadona V, Dussart-Moser S, Voirin N, Sinilnikova OM, Mignotte H, Mathevet P, Bremond A , Treilleux I, Martin A, Romestaing P , Raudrant D , Rudigoz R-C, Lenoir GM , Lasset C
Prognosis of early-onset breast cancer based on BRCA1/2 mutation status in a French population-based cohort and review, Breast Cancer Research and Treatement, vol. 101 pp.233-245

Bonanni R, Cafazzo S , Fantini C, Pontier D, Natoli E
Feeding-order in an urban feral domestic cat colony: relationship to dominance rank sex and age, Animal Behaviour, vol. 74 pp.1369-1379

Bonenfant C, Gaillard J-M, Dray S, Loison A, Royer M, Chessel D
Testing sexual segregation and aggregation: old ways are best, Ecology, vol. 88 pp.3202-3208

Bossard N, Velten M, Remontet L, Belot A, Maarouf N, Bouvier AM, Guizard AV, Tretarre B, Launoy G, Colonna M, Danzon A, Molinie F, Troussard X, Bourdon-Raverdy N, Carli PM, Jaffre A, Bessaguet C, Sauleau E, Schvartz C, Arveux P, Maynadie M, Grosclaude P, Estève J, Faivre J
Survival of cancer patients in France: A population-based study from the Association of the French Cancer Registries (FRANCIM), European Journal of Cancer, vol. 43 pp.149-160

Bossard N, Velten M, Remontet L, Belot A, Maarouf N, Bouvier AM, Guizard AV, Tretarre B, Launoy G, Colonna M, Danzon A, Molinie F, Troussard X, Bourdon-Raverdy N, Carli PM, Jaffre A, Bessaguet C, Sauleau E, Schvartz C, Arveux P, Maynadie M, Grosclaude P, Estève J, Faivre J
Survie des patients atteints de cancer en France : étude à partir des données des registres du réseau FRANCIM, Bulletin épidémiologique hebdomadaire, vol. 9-10 pp.66-69

Boulesteix M, Simard F, Antonio-Nkondjio C, Awono-Ambene P, Fontenille D, Biémont C
Insertion polymorphism of transposable elements and population structure of Anopheles gambiae M and S molecular forms in Cameroon, Molecular Ecology, vol. 16 pp.441-452

Bourqui R, Cottret L, Lacroix V, Auber D, Mary P, Sagot M-F, Jourdan F
Metabolic network visualization eliminating node redundance and preserving metabolic pathways, BMC Biology, vol. 1 - n°29 pp.1-19

Boussageon R, Gueyffier F, Moreau A, Gansel Y, Boussageon V
Some reflexions about double blind, Encephale-Revue de Psychiatrie clinique biologique et therapeutique, vol. 34(4) pp.347-351

Boutitie F, Gueyffier F, Achard JM
The JIKEI trial, Lancet, vol. 370 pp.1825-1826

Boutitie F, Oprisiu R, Achard JM, Mazouz H, Wang J, Messerli FH, Gueyffier F, Fournier A
Does a change in angiotensin-II-formation caused by antihypertensive drugs affect the risk of stroke ? A meta-analysis of trials according to treatment with potentially different effects on angiotensin-II, Journal of Hypertension, vol. 25 pp.1543-1553

Bray Y, Devillard S, Marboutin E, Mauvy B, Péroux R
Natal dispersal of European hare in France, Journal of Zoology, vol. 273 pp.426-434

Brohet RM, Goldgar DE, Easton DF, Antoniou AC , Andrieu N, Chang-Claude J, Peock S, Eeles RA, Cook M, Chu C , Nogues C, Lasset C, Berthet P, Meijers-Heijboer H, Gerdes AM, Olsson H, Caldes T , van Leeuwen FE , Rookus MA
, Journal of Clinical Oncology, vol. 25(25) pp.3831-3836

Buchet-Poyau K, Courchet J, Hir H L, Seraphin B, Scoazec J Y, Duret L, Domon-Dell C, Freund J N, Billaud M
Identification and characterization of human Mex-3 proteins a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies, Nucleic Acids Research, vol. 35 pp.1289-1300

Buiret G, Rabilloud M, Combe C, Paliot H, Disant F, Céruse P
Larynx Transplantation: Laryngectomees’ Opinion Poll, Transplantation, vol. 84(12) pp.1584-1589

Callait-Cardinal M-P, Leroux S, Venereau E, Chauve C, Le Pottier G, Zenner L
Incidence of histomonosis in Turkeys in france since the bas of dimetridazole and nifursol, Veterinary Records, vol. 161 pp.581-585

Cambouropoulos E, Crochemore M, Lliopoulos CS, Mohamed M, Sagot M-F
All maximal-pairs in step–leap representation of melodic sequence, Information Sciences, vol. 177 pp.1954-1962

Chamaillé-Jammes S, Fritz H, Holdo R
spatial relationship between elephant and sodium concentration of water disappears as density increased in Hwange National Park Zimbabwe, Journal of Tropical Ecology, vol. 23 pp.725-728

Chamaillé-Jammes S, Fritz H, Murindagomo F
Detecting climate changes of concern in highly variable environments: Quantile regressions reveal that droughts worsen in Hwange National Park Zimbabwe, Journal of Arid Environments, vol. 71 pp.323-329

Chamaillé-Jammes S, Fritz H, Murindagomo F
Climate-driven fluctuations in surface-water availability and the buffering role of artificial pumping in an African savanna: Potential implication for herbivore dynamics, Austral Ecology, vol. 32 pp.740-748

Chamaillé-Jammes S, Valeix M, Fritz H
Managing heterogeneity in elephant distribution: interactions between elephant population density and surface-water availability, Journal of Applied Ecology, vol. 44 pp.625-633

Chamaillé-Jammes S, Valeix M, Fritz H
Elephant management: why can’t we throw out the babies with the artificial bathwater?, Diversity and Distributions, vol. 13 pp.663-665

Charlat S, Davies N, Roderick G K, Hurst G D
Disrupting the timing of Wolbachia-induced male-killing, Biology Letters, vol. 3 pp.154-156

Charlat S, Hornett E A, Fullard J H, Davies N, Roderick G K, Wedell N, Hurst G D
Extraordinary flux in sex ratio, Science, vol. 317 pp.214-214

Charlat S, Reuter M, Dyson E A, Hornett E A, Duplouy A, Davies N, Roderick G K, Wedell N, Hurst G D
Male-killing bacteria trigger a cycle of increasing male fatigue and female promiscuity, Current Biology, vol. 17 pp.273-277

Cleophas TJ, Zwinderman AH, van Ouwerkerk B, Sobh M
Cardiovascular drug trials: how to examine interaction and why so, Netherlands heart journal, vol. 15 pp.61-66

Cohas A, Allainé D
Extra-pair paternity in alpine marmots: do Females come from Venus and males from Mars?, International Marmot Network, vol. pp.42-48

Cohas A, Bonenfant C, Gaillard J-M, Allainé D
Are extra-pair young better than within-pair young? A comparison of survival and dominance in alpine marmot, Journal of Animal Ecology, vol. 76 pp.771-781

Cohas A, Yoccoz NG, Allainé D
Extra-pair paternity in alpine marmots Marmota marmota: genetic quality and genetic diversity effects, Behavioral ecology and sociobiology, vol. 61 pp.1081-1092

Couris CM, Duclos A, Rabilloud M, Couray-Targe S, Ecochard R, Delmas P D, Schott AM
A seventy percent overestimation of the burden of hip fractures in women aged 85 and over, Bone, vol. 41 pp.896-900

Couris CM, Rabilloud M, Ecochard R, Metzger MH, Caillat-Vallet E, Savey A, Fabry J, Vanhems P
Nine-year downward trends in surgical site infection rate in southeast France (1995-2003), Journal of hospital infection, vol. 67 pp.127-134

Denis M A, Iwaz J, Bernadet A, Ecochard R, Forissier M F, Porst J M, Robert O, Volckmann C, Bergeret A
Impact du matériel de sécurité sur les accidents d`exposition au sang aux Hospices Civils de Lyon : intérêt d`un système d`arlerte, Hygiénes, vol. 15 pp.213-217

Denis M A, Iwaz J, Bernadet A, Ecochard R, Forissier M F, Porst J M, Robert O, Volckmann C, Bergeret A
Spotting variations in task-linked blood exposures, American journal of infection control, vol. 22 pp.94-101

Desandes E, Lacour B, Belot A, White-Koning M, Velten M, Tretarre B, Sauleau E-A, Maarouf N, Guizard A-V, Delafosse P, Danzon A, Cotte C, Boutreux S, Brugières L
Incidence et survie des cancers de l`adolescent et de l`adulte jeune en France (1978-1997), Bulletin du Cancer, vol. 94(4) pp.331-337

Descamps S, Boutin S, Berteaux D, Gaillard J-M
Female red squirrels fit Williams` hypothesis of increasing reproductive effort with increasing age, Journal of Animal Ecology, vol. 76 pp.1192-1201

Desneux N, Decourtye A, Delpuech J-M
The Sublethal Effects of Pesticides on Beneficial Arthropods, Annual Review of Entomology, vol. 52 pp.81-106

Diekmann Y, Sagot M-F, Tannier E
Evolution under Reversals: Parsimony and Conservation of Common Intervals, IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 4 pp.301-309

Dion N, Cotart JL, Rabilloud M
Correction of nutrition test errors for more accurate quantification of the link between dental health and malnutrition, Nutrition, vol. 23 pp.301-307

Dray S, Dufour A B, Chessel D
The ade4 Package--II: Two-table and K-table Methods, R News, vol. 7 pp.47-52

Dray S, Dufour A-B
The ade4 Package: Implementing the Duality Diagram for Ecologists, Journal of Statistical Software, vol. 22 pp.1-20

Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, Harley E H, Delibes M, Pontier D, Kitchener AC, Yamaguchi N, O`Brien SJ, Macdonald DW
The Near Eastern Origin of Cat Domestication, Science, vol. 317 pp.519-523

Dronne MA, Grenier E, Dumont T, Hommel M, Boissel J-P
Role of astrocytes in grey matter during stroke: a modelling approach, Brain Research, vol. 1138 pp.231-242

Ducrot V, Péry ARR, Mons R, Charles S, Garric J
Dynamic engergy budgets as a basis to model population-level effects of zinc-spiked sediments in the gastropod Valvata piscinalis, Environmental Toxicology and Chemistry, vol. 26 pp.1774-1783

Dumonteil E, Tripet F, Jesus Ramirez-Sierra M, Payet V, Lanzaro G, Menu F
Assessment of Triatoma dimidiata dispersal in the Yucatan peninsula of Mexico by morphometry and microsatellite markers, The American Society of Tropical Medicine and Hygiene, vol. 76 pp.930-937

Durieu I, Abbas-Chorfa F, Drai J, Iwaz J, Steghens JP, Puget M, Écochard R, Bellon G
Plasma fatty acids and lipid hydroperoxides increase after antibiotic therapy in cystic fibrosis, European Respiratory Journal, vol. 29 pp.958-964

Estève J
Incidence du cancer du sein en France et dans les pays développés, La Presse médicale, vol. 36 pp.315-321

Etard J F, Lanièce I, B Mame, F Koita, Cilote V, Blazejewski L, Diop K, Desclaux A, Ecochard R, Ndoye I, Delaporte E
A 84-month follow up of adherence to HAART in a cohort of adult Senegalese patients, Tropical medicine & international health, vol. 12 pp.1191-1198

Fablet M, Rebollo R, Biémont C, Vieira C
The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes, Gene, vol. 390 pp.84-91

Fablet M, Souames S, Biémont C, Vieira C
Evolutionary Pathways of the tirant LTR Retrotransposon in the Drosophila melanogaster Subgroup of Species, Journal of Molecular Evolution, vol. 64 pp.438-447

Fabry J, Morales I, Metzger M-H, Russell I, Gastmeier P
Quality of information: a European challenge, Journal of hospital infection, vol. 65 pp.155-158

Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM , Simonet P
Horizontal Gene Transfer Regulation in Bacteria as a "Spandrel" of DNA Repair Mechanisms, PLoS One, vol. 2 pp.e1055-e1066

Fleurance G, Duncan P, Fritz H, Cabaret J, Cortet J, Gordon IJ
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Detection of Salmonella sp. in Dermanyssus gallinae using an FTA ® filter-based polymerase chain reaction, Medical and Veterinary Entomology, vol. 21(2) pp.148-152

Valiente Moro C, Desloire S, Vernozy-Rozand C, Chauve C, Zenner L
Comparison of the VIDAS® system FTA® filter-based PCR and culture on SM ID for detecting Salmonella in Dermanyssus gallinae, Letters in Applied Microbiology, vol. 44(4) pp.431-436

Van Gossum H, Beatty CD , Charlat S , Waqa H , Markwell T , Skevington JH, Tuiwawa M, Sherratt TN
Male rarity and putative sex-role reversal in Fijian damselflies (Odonata), Journal of Tropical Ecology, vol. 23 pp.591-598

Vanhems P, Pires-Cronenberger S, Lasset C
Sporadic and epidemic community legionellosis: two faces of the same illness, European Respiratory Journal, vol. 30 pp.813-813

Vanpé C, Gaillard J-M, Kjellander P, Mysterud A, Magnien P, Delorme D, Van Laere G, Klein F, Liberg O, Hewison AJM
Antler Size Provides an Honest Signal of Male Phenotypic Quality in Roe Deer, The American Naturalist, vol. 169 pp.481-493

Varaldi J, Patot S, Maache M, Lepetit D , Fleury F
Behavioural manipulation of insect parasitoids by a maternally inherited virus: ecological consequences and potential applications for biological control, Entomological Research, vol. 37 pp.A11-A73

Vautrin E, Charles S, Genieys S, Vavre F
Evolution and invasion dynamics of multiple infections with Wolbachia investigated using matrix based models., Journal of Theoretical Biology, vol. 245 pp.197-209

Veiberg V, Mysterud A, Bjørkvoll E, Langvatn R , Loe LE, Irvine J, Bonenfant C, Couweleers F , Stenseth NC
Evidence for a trade-off between early growth and tooth wear in Svalbard reindeer, Journal of Animal Ecology, vol. 76(6) pp.1139-1148

Veiberg V, Mysterud A, Gaillard J-M, Delorme D, Van Laere G, Klein F
Bigger teeth for longer life? Longevity and molar height in two roe deer populations, Biology Letters, vol. 3 pp.268-270

Villar E, Boissonnat P, Sebbag L, Hendawy A, Cahen R, Trolliet P, Labeeuw M, Écochard R, Pouteil-Noble C
Poor outcome in heart transplant patients with end-stage renal failure, Nephrology Dialysis Transplantation, vol. 22(5) pp.1383-1389

Villar E, Remontet L, Labeeuw M, Ecochard R
Effect of age sex and diabetes on excess death in end-stage renal failure, Journal of the American Society of Nephrology, vol. 18(7) pp.2125-2134

Vimont A, Delignette-Muller M-L, Vernozy-Rozand C
Supplementation of enrichment broths by novobiocin for detecting Shiga toxin-producing Escherichia coli from food: a controversial use, Letters in applied microbiology, vol. 44 pp.326-331

Vimont A, Vernozy-Rozand C, Montet M-P, Bavai C, Fremaux B, Delignette-Muller M-L
Growth of Shiga-Toxin producing Escherichia coli (STEC) and bovine feces background microflora in various enrichment protocols, Veterinary Microbiology, vol. 123 pp.274-281

You B, Blandin S, Gérinière L, Lasset C, Souquet P-J
Mésothéliomes familiaux : une composante génétique associée aux risques environnementaux ?, Bulletin du Cancer, vol. 94 pp.705-710

Zaoui S, Biémont C, Meguenni K
Approche épidémiologique du diabète dans les milieux rural et urbain de la région de Tlemcen Ouest, Cahier Santé, vol. 17 pp.15-21

Zchori-Fein E, Gottlieb Y, Czosnek H, Chiel E, Vavre F, Fleury F, Inbar M, Ghanim M
Tomato yellow leaf curl virus transmission efficacy is determined by symbiotic bacteria in the vector the sweet potato whitefly Bemisia tabaci, Entomological Research, vol. 37(1) pp.A42-A43

book :
Dumas J-G, Roch J-L, Tannier E, Varrette S
Théorie des codes: compression cryptage correction, Dunod, 2007

incollection :
Charif D, Lobry JR
SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis, article in: Structural approaches to sequence evolution: Molecules networks populations, Springer Verlag, pp.207-232

inproceedings :
Braga MDV, Sagot M-F, Scornavacca C, Tannier E
The solution space of sorting by reversals, International Symposium on Bioinformatics Research and Applications, Lecture Notes in Bioinformatics, vol. 4463 pp.293-304

Carvalho A, Oliveira A, Sagot M-F
Efficient learning of Bayesian network classifiers:An extension to the TAN classifie, 20th Australian Joint Conference on Artificial Intelligence, , Lecture notes in computer science, vol. 4830 pp.16-25

Melodelima C, Gautier C
Markovian approach for the segmentation of the chimpanzee genome, Proceeding of BIRD`07, , Lecture notes in Bioinformatics, vol. 4414 pp.251-262

misc :
Necşulea A, Lobry JR
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry, , vol. 7 pp.379-381

phdthesis :
Hong Le Q
Facteurs pronostiques de la leucémie aigue lymphoïde de l`adulte : analyse du protocole LALA 94, , 2007

Lacroix V
Identification de motifs dans les réseaux métaboliques Définitions algorithmes et application au métabolisme d’Escherichia coli, , 2007

Maucort-Boulch D
Modélisation et Prédiction Application en cancérologie, , 2007

Palmeira L
Analyse et modélisation des dépendances entre sites voisins dans l’évolution des séquences d’ADN, , 2007

Truntzer C
Évaluation de modèles pronostiques issus de l`analyse du transcriptome, , 2007

Villar E
Apport des méthodes récentes de modélisation de survie dans le contexte spécifique des patients dialysés, , 2007

221 articles

article :
Afonso E, Thulliez P, Gilot-Fromont E
Transmission of Toxoplasma gondii in an urban population of domestic cats (Felis catus), International Journal for Parasitology, vol. 36 pp.1373-1382

Allemand R
Anobiidae nouveaux ou méconnus de la faune de la France (Coleoptera), L`entomologiste, vol. 62 pp.65-66

Amat I, Castelo M, Desouhant E, Bernstein C
The influence of the temperature and host availability on the host exploitation strategies of sexual and asexual parasitic wasps of the same species, Oecologia, vol. 148 pp.153-161

Amazian K, Abdelmoumene T, Sekkat S, Terzaki S, Njah M, Dhidah L, Caillat-Vallet E, Saadatian-Elahi M, Fabry J
Multicentre study on hand hygiene facilities and practice in the Mediterranean area: results from the NosoMed Network, Journal of hospital infection, vol. 62 pp.311-318

Amazian K, Fendri C , Missoum MFK , Bouzouaia N , Rahal K , Savey A , Saadatian-Elahi M, Fabry J
Multicenter pilot survey of resistant bacteria in the Mediterranean area, European Journal of Clinical Microbiology and Infectious Diseases, vol. 25 pp.340-343

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C
Bioinformatic sreening of human ESTs for differentially expressed genes in normal and tumor tissues, BMC Genomics, vol. 7 pp.1-11

Arigon A-M, Perrière G, Gouy M
HoSeql : automated homologous sequence identification in gene family databases, Bioinformatics, vol. 22 pp.1786-1787

Arigon A-M, Tchounikine A, Miquel M
Handling Multiple Points of View in a Multimedia Data Warehouse, ACM Transactions on Multimedia Computing Communications and Applications, vol. 2 pp.199-218

Asnafi V, Rubio MT, Delabesse E, Villar E, Davi F, Damaj G, Irsch I, Dhédin N, Vernant JP , Varet B, Buzyn A, Macintyre E
Prediction of relapse by Day 100 BCR-ABL quantification after allogenic stem cell transplantation for chronic myeloid leukaemia, Leukemia, vol. 20 pp.793-799

Atoui H, Fayn J, Gueyffier F, Rubel P
Cardiovascular Risk Stratification in Decision Support Systems: A Probabilistic Approach. Application to pHealth, Computers in Cardiology, vol. 33 pp.281-284

Auclair J, Buisine MP, Navarro C, Ruano E, Montmain G, Desseigne F, Saurin JC, Lasset C, Bonadona V, Giraud S, Puisieux A, Wang Q
Systematic mRNA analysis for the effect of MLH1 and MSH2 missense and silent mutations on aberrant splicing, Human Mutation, vol. 27 pp.145-154

Aury J-M, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Segurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Camara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller AM, Kissmehl R, Klotz C, Koll F, Le Mouel A, Lepere G, Malinsky S, Nowacki M, Nowak JK, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Betermier M, Weissenbach J, Scarpelli C, Schachter V, Sperling L, Meyer E, Cohen J, Wincker P
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia, Nature, vol. 444 pp.171-178

Azizi M, Menard J, Peyrard S, Lièvre M, Marre M, Chatellier G
Assessment of Patients` and Physicians` Compliance to an ACE Inhibitor Treatment Based on Urinary N-Acetyl Ser-Asp-Lys-Pro Determination in the Noninsulin-Dependent Diabetes Hypertension Microalbuminuria Proteinuria Cardiovascular Events and Ramipril (DIABHYCAR) Study, Diabetes Care, vol. 29 pp.1331-1336

Écochard R
Heterogeneity in fecundability studies: issues and modelling, Statistical Methods in Medical Research, vol. 15 pp.1-20

Bailly-Bechet M, Danchin A, Iqbal M, Marsili M, Vergassola M
Codon Usage Domains over Bacterial Chromosomes, PLos Computational Biology, vol. 2(4) pp.83-95

Bancel B, Estève J, Souquet JC, Toyokuni S, Ohshima H, Pignatelli B
Differences in oxidative stress dependence between gastric adenocarcinoma subtypes, World Journal Gastroenterology, vol. 12 pp.1005-1012

Baratin D, Marceillac E, Trepo C, Cotte L, Peyramond D, Chidiac C, Touraine JL, Livrozet JM, Fabry J, Vanhems P
A recent increase in AIDS at Lyon University Hospitals: patient characteristics and comparisons with previous years, HIV Medicine, vol. 7 pp.59-63

Bel-Venner MC, Venner S
Mate-guarding strategies and male competitive ability: results from a field study in an orb-weaving spider, Animal Behaviour, vol. 71 pp.1315-1322

Beyragued L, de Beaudrap P, Bouchet C, Fabry J
Patient education programs in Rhone-Alpes region hospitals, Santé Publique, vol. 18 pp.549-558

Biémont C, Vieira C
Junk DNA as an evolutionary force, Nature, vol. 443 pp.521-524

Blanc R, Guillemain M, Mouronval JB, Desmonts D, Fritz H
Effects of non-consumptive leisure disturbance to wildlife, Revue d`Ecologie - La terre et la vie, vol. 61(2) pp.117-133

Blesius A, Chabaud S, Cucherat M, Mismetti P, Boissel J-P, Nony P
Compliance-Guided Therapy: A New Insight Into the Potential Role of Clinical Pharmacologists, Clinical Pharmacokinetics, vol. 45 pp.95-104

Boissel J-P, Pouchain D, Brodin M, Rouleau P, Barrier G, Fardeau M, Rabeharisoa V, Cathelineau G, Bricaire F, Zarifian E
Définition du panier de soins remboursables (PSR) : propositions et schéma d`applications à la prévention, Revue médicale de l`assurance maladie, vol. 37 pp.125-131

Bonnier M, Doré C, Amédéo J, Guérin-Faublée V
In vitro activity of tylosin and tilmicosin against cocci isolated from bovine mastitis, Revue de Médecine Vétérinaire, vol. 157 pp.486-489

Boulétreau PH, Bost M, Fontanges E , Lauverjat M , Gutknecht C , Écochard R, Delmas PD, Chambrier C
Fluoride exposure and bone status in patients with chronic intestinal failure who are receiving home parenteral nutrition, American Journal of Clinical Nutrition, vol. 83 pp.1429-1437

Boulesteix M, Weiss M, Biémont C
Differences in Genome Size Between Closely Related Species : The Drosophila melanogaster Species Subgroup, Molecular Biology and Evolution, vol. 23 pp.162-167

Boussau B, Gouy M
Efficient Likelihood Computations with Nonreversible Models of Evolution, Systematic Biology, vol. 55 pp.756-768

Boyce MS, Haridas CV, Lee CT , Boggs CL, Bruna E, Coulson T, Doak D, Drake JM, Gaillard JM, Horvitz CC, Kalisz S, Kendall BE, Knight T, Mastrandrea M, Menges ES, Morris WF, Pfister CA, Tuljapurkar S
Demography in an increasingly variable world, Trends in Ecology and Evolution, vol. 21 pp.141-148

Brunet AS, Ploton C, Galambrun C, Pondarré C, Pages MP, Bleyzac N, Freydiere A-M, Barbé G, Bertrand Y
Low Incidence of Sepsis Due to Viridans Streptococci in a Ten-Year Retrospective Study of Pediatric Acute Myeloid Leukemia, Pediatric Blood & Cancer, vol. 47(6) pp.765-772

Brunet FG, Roest Crollius H, Paris M, Aury J-M, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M
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Calenge C
The package "adehabitat" for the R software : A tool for the analysis of space and habitat use by animals, Ecological Modelling, vol. 197 pp.516-519

Calenge C, Dufour A-B
Eigenanalysis of selection ratios from animal radio-tracking data, Ecology, vol. 87 pp.2349-2355

Callait-Cardinal M-P, Chauve C, Reynaud MC, Alogninouwa T, Zenner L
Infectivity of Histomonas meleagridis in ducks, Avian Pathology, vol. 35(2) pp.109-116

Carvalho AM, Freitas AT, Oliveira AL, Sagot M-F
An efficient algorithm for the identification of structured motifs in DNA promoter sequences, IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 3 pp.126-140

Casilli F, Tournier I, Sinilnikova O M, Coulet F, Soubrier F, Houdayer C, Hardouin A, Berthet P, Sobol H, Bourdon V, Muller D, Fricker JP, Capoulade-Metay C, Chompret A, Nogues C, Mazoyer S, Chappuis P, Maillet P, Philippe C, Lortholary A, Gesta P, Bézieau S, Toulas C, Gladieff L, Maugard CM, Provencher DM, Dugast C, Delvincourt C, Nguyen TD, Faivre L, Bonadona V, Frébourg T, Lidereau R, Stoppa-Lyonnet D , Tosi M
The contribution of germline rearrangements to the spectrum of BRCA2 mutations, Journal of Medical Genetics, vol. 43 pp.e49-e49

Castel P, Négrier S, Boissel J -P
Why don`t cancer patients enter clinical trials? A review, European Journal of Cancer, vol. 42 pp.1744-1748

Castelo MK, Ney-Nifle M, Corley JC, Bernstein C
Oviposition height increases parasitism success by the robber fly Mallophora ruficauda (Diptera: Asilidae), Behavioral ecology and sociobiology, vol. 61 pp.231-243

Chamaillé-Jammes S, Fritz H, Murindagomo F
Spatial patterns of the NDVI–rainfall relationship at the seasonal and interannual time scales in an African savanna, International Journal of Remote Sensing, vol. 27 pp.5185-5200

Chambon-Dubreuil E, Auger P, Gaillard J-M, Khaladi M
Effect of agressive behaviour on age-structured population dynamics, Ecological Modelling, vol. 193 pp.777-786

Charlat S, Engelstadter J, Dyson E A, Hornett E A, Duplouy A, Tortosa P, Davies N, Roderick G K, Wedell N, Hurst G D
Competing selfish genetic elements in the butterfly Hypolimnas bolina, Current Biology, vol. 16 pp.2453-2458

Charles S, Mallet J -P, Persat H
Population dynamics of grayling: Modelling temperature and discharge effects, Mathematical Modelling of Natural Phenomena, vol. 1 pp.33-48

Chaumot A, Milioni N, Abdoli A, Pont D, Charles S
First step of a modeling approach to evalue spatial heterogeneity in fish (Cottus gobio) population dynamics, Ecological Modelling, vol. 197 pp.263-273

Chevalier P, Cottraux J, Mollard E, Sai N, Brun S, Burri H, Restier L, Adeleine P
Prevention of implantable defibrillator shocks by cognitive behavioral therapy: a pilot trial, American Heart Journal, vol. 151 pp.191.e1-191.e6

Clement Y, Tavares R, Marais GAB
Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome, Gene, vol. 385 pp.89-95

Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R
EMBL Nucleotide Sequence Database: developments in 2005, Nucleic Acids Research, vol. 34 pp.D10-D15

Cohas A, Yoccoz NG, Da Silva A, Goossens B, Allainé D
Extra-pair paternity in the monogamous alpine marmot (Marmota marmota): The roles of social setting and female mate choice, Behavioral ecology and sociobiology, vol. 59 pp.597-605

Collin-Chavagnac D, Jacques D, Perrin M, Rabilloud M, Manchon M
BNP/NT-proBNP: que choisir dans un laboratoire d’urgences ?, Annales de Biologie Clinique (Paris), vol. 64 pp.275-280

Cornu M, Beaufort A, Rudelle S, Laloux L, Bergis H, Miconnet N, Serot T, Delignette-Muller M-L
Effect of temperature water-phase salt and phenolic contents on Listeria monocytogenes growth rates on cold-smoked salmon and evaluation of secondary models, International Journal of Food Microbiology, vol. 106 pp.159-168

Cortot AB, Geriniere L, Robinet G, Breton JL , Corre R, Falchero L, Berard H, Gimenez C, Chavaillon JM, Perol M, Bombaron P, Mercier C, Souquet PJ
Phase II trial of temozolomide and cisplatin followed by whole brain radiotherapy in non-small-cell lung cancer patients with brain metastases: a GLOT-GFPC study, Annals of Oncology, vol. 17 pp.1412-1417

Coulson T, Benton TG, Lundberg P, Dall SRX, Kendall BE, Gaillard J-M
Estimating individual contributions to population growth: evolutionary fitness in ecological time, Proceedings of The Royal Society B-Biological Sciences, vol. 273 pp.547-555

Couris CM, Gutknecht C, Écochard R, Gelas-Dore B, Hajri T, Colin C, Schott A-M
Estimates of the number of cancer patients hospitalized in a geographic area using claims data without a unique personal identifier, Methods of Information in Medicine, vol. 45 pp.515-522

Couris CM, Seigneurin A , Bouzbid S , Rabilloud M, Perrin P , Martin X, Colin C, Schott A-M
French claims data as a source of information to describe cancer incidence: predictive values of two identification methods of incident prostate cancers, Journal of medical systems, vol. 30 pp.459-463

Crampe J-P, Loison A, Gaillard J-M, Florence E, Caens P, Appolinaire J
Patrons de reproduction des femelles d`isard (Rupicapra pyrenaica pyrenaica) dans une population non chassée et conséquences démographiques., Canadian Journal of Zoology, vol. 84 pp.1263-1268

Crochemore M, Lliopoulos CS, Mohamed M, Sagot M-F
Longest repeats with a block of k don’t cares, Theoretical Computer Science, vol. 362 pp.248-254

Cugnasse J-M, Garel M
Capture of young ungulates with a bird of prey: a feasibility test in Mediterranean mouflon, Mammalia, vol. 70 pp.313-314

Culhane AC, Thioulouse J
A multivariate approach to integrating Datasets using made4 and ade4, R News, vol. pp.1-15

Da Silva A, Luikart G, Yoccoz NG, Cohas A, Allainé D
Genetic diversity-fitness correlation revealed by microsatellite analyses in European alpine marmots (Marmota marmota), Conservation Genetics, vol. 7 pp.371-382

De Laplanche E, Gouget K, Cleris G, Dragounoff F, Demont J, Morales A, Bezin L, Godinot C, Perrière G, Mouchiroud D, Simonnet H
Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules, American Journal of Physiology - Renal Physiology, vol. 291 pp.F750-F760

Deceliere G, Letrillard Y, Charles S, Biémont C
TESD : a transposable element dynamics simulation environment, Bioinformatics, vol. 22 pp.2702-2703

Dejardin O, Remontet L, Bouvier AM, Danzon A, Tretarre B , Delafosse P
Socioeconomic and geographic determinants of survival of patients with digestive cancer in France, British Journal of Cancer, vol. 95 pp.944-949

Delignette-Muller M-L, Cornu M, Pouillot R, Denis J-B
Use of Bayesian modelling in risk assessment: Application to growth of Listeria monocytogenes and food flora in cold-smoked salmon, International journal of food microbiology, vol. 106 pp.195-208

Delmas J, Breysse F, Devulder G, Flandrois J-P, Chomarat M
Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene, Diagnostic Microbiology and Infectious Disease, vol. 55 pp.263-268

Descamps S, Boutin S, Berteaux D, Gaillard J-M
Best squirrels trade a long life for an early reproduction, Proceedings of The Royal Society B-Biological Sciences, vol. 273 pp.2369-2374

Desloire S, Valiente Moro C, Chauve C, Zenner L
Comparison of four methods of extracting DNA from D. gallinae (Acari: Dermanyssidae), Veterinary Research, vol. 37(5) pp.725-732

Diallo MD, Duponnois R, Guisse A, Sall S, Chotte J-L, Thioulouse J
Biological effects of native and exotic plant residues on plant growth microbial biomass and N availability under controlled conditions, European Journal of Soil Biology, vol. 42 pp.238-246

Dray S, Legendre P, Peres-Neto PR
Spatial modelling : a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM), Ecological Modelling, vol. pp.483-493

Dronne MA, Boissel J-P, Grenier E
A mathematical model of ion movements in grey matter during a stroke, Journal of Theoretical Biology, vol. 240 pp.599-615

Duflo F, Sautou-Miranda V, Pouyau A, Taylor P, Combet S, Chotel F, Bleyzac N, Chassard C
Efficacy and plasma levels of ropivacaine for children: controlled regional analgesia following lower limb surgery, British Journal of Anaesthesia, vol. 97(2) pp.250-254

Dufour A-B, Pavoine S, Chessel D
Exemple de démarche biométrique : une étude de la variabilité génétique humaine par la double analyse en coordonnées principales, Biométrie Humaine et Anthropologie, vol. 24 pp.5-11

Duponnois R, Assikbetse K, Ramanankierana H, Kisa M, Thioulouse J, Lepage M
Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates, FEMS Microbiology Ecology, vol. 56 pp.292-303

Duponnois R, Kisa M, Assigbetse K, Prin Y, Thioulouse J, Issartel M, Moulin P, Lepage M
Fluorescent pseudomonads occurring in Macrotermes subhyalinus mound structures decrease Cd toxicity and improve its accumulation in sorghum plants, Science of the Total Environment, vol. 370 pp.391-400

Dupuis O, Moreau R, Silveira R, Pham MT, Zentner A , Cucherat M, Rudigoz R-C, Redarce T
A new obstetric forceps for the training of junior doctors: A comparison of the spatial dispersion of forceps blade trajectories between junior and senior obstetricians, American Journal of Obstetrics and Gynecology, vol. 194 pp.1524-1531

Durant D, Fritz H
Variation of pecking rate with sward height in wild wigeon Anas penelope, Journal of Ornithology, vol. 147 pp.367-370

Durant D, Kersten M, Fritz H, Juin H, Lila M
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Duret L
The GC Content of Primates and Rodents Genomes Is Not at Equilibrium : a Reply to Antezana, Journal of Molecular Evolution, vol. pp.803-806

Duret L, Chureau C, Samain S, Weissenbach J, Avner P
The Xist RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene, Science, vol. 312 pp.1653-1655

Duret L, Eyre-Walker A, Galtier N
A new perspective on isochore evolution, Gene, vol. pp.71-74

Ebenhöh O, Handorf T, Kahn D
Evolutionary changes of metabolic networks and their biosynthetic capacities, IEE Proceedings Systems Biology, vol. 153 pp.354-358

Engelstädter J, Charlat S
Outbreeding selects for spiteful cytoplasmic elements, Proceedings of The Royal Society B-Biological Sciences, vol. 273 pp.923-929

Engelstädter J, Charlat S, Pomiankowski A, Hurst G D D
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Esteve J
Les données épidémiologiques justifient-elles une nouvelle réglementation de l`exposition aux champs magnétiques d`extrêmement basse fréquence ?, Environnement Risques et Santé, vol. 5(6) pp.459-466

Fablet M, Donald JF, Biémont C, Vieira C
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Fantino B, Voirin N, Laforest L , Fantino F, Chretin S, Van Ganse E
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Fares H, David S, Jullien P, Diebold F, Chovet F
Santé et isolement des résidents de 60 ans et plus dans les foyers Sonacotra du Rhône, Bulletin épidémiologique hebdomadaire, vol. 26 pp.189-190

Fauvergue X, Boll R, Rochat J, Wajnberg E, Bernstein C, Lapchin L
Habitat assessment by parasitoids : consequences for population distribution, Behavioral Ecology, vol. 17 pp.522-531

Ferrières J, Cambou J-P, Gayet J-L, Herrmann M-A, Leizorovicz A
Prognosis of patients with atherothrombotic disease: A prospective survey in a non-hospital setting, International Journal of Cardiology, vol. 112(3) pp.302-307

Festa-Bianchet M, Coulson T, Gaillard J-M, Hogg JT, Pelletier F
Stochastic predation events and population persistence in bighorn sheep., Proceedings of The Royal Society B-Biological Sciences, vol. 273 pp.1537-1543

Fischer C, Luaute J, Nemoz C, Morlet D, Kirkorian G , Mauguiere F
Improved prediction of awakening or nonawakening from severe anoxic coma using tree-based classification analysis, Critical Care Medicine, vol. 34 pp.1520-1524

Fischer C, Luaute J, Nemoz C, Morlet D, Kirkorian G, Mauguiere F
Editorial response: Evoked potentials can be used as a prognosis factor for awakening, Critical Care Medicine, vol. 34 pp.2025-2025

Fouchet D, Marchandeau S, Langlais M, Pontier D
Waning of maternal immunity and the impact of diseases: The example of myxomatosis in natural rabbit populations, Journal of Theoretical Biology, vol. 242 pp.81-89

Fouque D, Laville M, Boissel J-P
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Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, Maleszka R, Robertson HM, Weaver DB, Beye M, Bork P, Elsik CG, Hartfelder K, Hunt GJ, Zdobnov EM, Amdam GV, Bitondi MMG, Collins AM, Cristino AS, Lattorff HMG, Lobo CH, Moritz RFA, Nunes FMF, Page RE, Simoes ZLP, Wheeler D, Carninci P, Fukuda S, Hayashizaki Y, Kai C, Kawai J, Sakazume N, Sasaki D, Tagami M, Albert S, Baggerman G, Beggs KT, Bloch G, Cazzamali G, Cohen M, Drapeau MD, Eisenhardt D, Emore C, Ewing MA, Fahrbach SE, Foret S, Grimmelikhuijzen CJP, Hauser F, Hummon AB, Huybrechts J, Jones AK, Kadowaki T, Kaplan N, Kucharski R, Leboulle G, Linial M, Littleton JT, Mercer AR, Richmond TA, Rodriguez-Zas SL, Rubin EB, Sattelle DB, Schlipalius D, Schoofs L, Shemesh Y, Sweedler JV, Velarde R, Verleyen P, Vierstraete E, Williamson MR, Ament SA, Brown SJ, Corona M, Dearden PK, Dunn WA, Elekonich MM, Fujiyuki T, Gattermeier I, Gempe T, Hasselmann M, Kage E, Kamikouchi A, Kubo T, Kunieda T, Lorenzen M, Milshina NV, Morioka M, Ohashi K, Overbeek R, Ross CA, Schioett M, Shippy T, Takeuchi H, Toth A L, Willis JH, Wilson MJ, Gordon KHJ, Letunic I, Hackett K, Peterson J, Felsenfeld A, Guyer M, Solignac M, Agarwala R, Cornuet J M, Monnerot M, Mougel F, Reese JT, Vautrin D, Gillespie JJ, Cannone JJ, Gutell RR, Johnston JS, Eisen MB, Iyer VN, Iyer V, Kosarev P, Mackey AJ, Solovyev V, Souvorov A, Aronstein K A, Bilikova K, Chen Y P, Clark A G, Decanini LI, Gelbart WM, Hetru C, Hultmark D, Imler J L, Jiang H B, Kanost M, Kimura K, Lazzaro BP, Lopez DL, Simuth J, Thompson GJ, Zou Z, De Jong P, Sodergren E, Csuros M, Milosavljevic A, Osoegawa K, Richards S, Shu CL, Duret L, Elhaik E, Graur D, Anzola JM, Campbell KS, Childs KL, Collinge D, Crosby MA, Dickens CM, Grametes LS, Grozinger CM, Jones PL, Jorda M, Ling X, Matthews BB, Miller J, Mizzen C, Peinado MA, Reid JG, Russo S M, Schroeder AJ, St Pierre SE, Wang Y, Zhou PL, Jiang HY, Kitts P, Ruef B, Venkatraman A, Zhang L, Aquino-Perez G, Whitfield C W, Behura S K, Berlocher S H, Sheppard W S, Smith D R, Suarez A V, Tsutsui N D, Wei X H, Havlak P, Li B S, Liu Y, Jolivet A, Lee S, Nazareth L V, Pu L L, Thorn R, Stolc V, Newman T, Samanta M, Tongprasit W A, Claudianos C, Berenbaum M R, Biswas S, de Graaf D C, Feyereisen R, Johnson R M, Oakeshott J G, Ranson H, Schuler M A, Muzny D, Chacko J, Davis C, Dinh H, Gill R, Hernandez J, Hines S, Hume J, Jackson L, Kovar C, Lewis L, Miner G, Morgan M, Nguyen N, Okwuonu G, Paul H, Santibanez J, Savery G, Svatek A, Villasana D, Wright R
Insights into social insects from the genome of the honeybee Apis mellifera, Nature, vol. 443 pp.931-949

Weladji RB, Gaillard J-M, Yoccoz NG, Holand O, Mysterud A, Loison A, Nieminen M, Stenseth NC
Good reindeer mothers live longer and become better in raising offspring., Proceedings of The Royal Society B-Biological Sciences, vol. 273 pp.1239-1244

Wertheim B, Allemand R, Vet LEM, Dicke M
Effects of aggregation pheromone on individual behaviour and food web interactions : a field study on Drosophila, Ecological Entomology, vol. 31 pp.216-226

Wolf C, Langlais M, Sauvage F, Pontier D
A Multi-Patch Epidemic Model with Periodic Demography Direct and Indirect Transmission and Variable Maturation Rate, Mathematical Population Studies, vol. 13 pp.153-177

Yoccoz NG, Gaillard J-M
Age structure matters for Alpine ibex population dynamics: comment on Lima and Berryman (2006), Climate Research, vol. 32 pp.139-141

Zannad F, Kessler M, Lehert P, Grünfeld JP, Thuilliez C, Leizorovicz A, Lechat P
Prevention of cardiovascular events in end-stage renal disease: Results of a randomized trial of fosinopril and implications for future studies, Kidney International, vol. 70(7) pp.1318-1334

Zannèse A, Baïsse A, Gaillard J-M, Hewison AJM, Saint-Hilaire K, Toïgo C, Van Laere G, Morellet N
Hind foot length : an indicator for monitoring roe deer populations at a landscape scale, Wildlife Society Bulletin, vol. 34 pp.351-358

Zenner L, Drevon-Gaillot E, Callait-Cardinal M-P
Evaluation of four manual tick-removal devices for dogs and cats, Veterinary Records, vol. 159(16) pp.526-529

incollection :
Agreil C, Meuret M, Fritz H
Adjustement of feeding choices and intake by a ruminant foraging in varied and variable environments: new insights from continous bite monitoring, article in: CAB International, , pp.302-325

Fritz H, Loison A
Large Herbivores across Biomes. Large Herbivore Ecology Ecosystem Dynamics and Conservation, article in: Conservation Biology, Cambridge University Press, pp.19-49

Le Roux X , Leriche H, Abbadie L , Fritz H
Modification of the savanna functioning by herbivores, article in: Structure function and dynamics of a savanna ecosystem, Springer-Verlag, pp.185-200

Varaldi J, Gandon S, Rivero A, Patot S, Fleury F
A newly discovered virus manipulates supermarasitism behavior in a parasitoid wasp, article in: Insect Symbiosis, , pp.119-139

inproceedings :
Bourqui R, Auber D, Lacroix V, Jourdan F
Metabolic network visualization using constraint planar graph drawing algorithm, 10th conf. on Information Visualization, IEEE Computer Society pp.489-496

Melodelima C, Guéguen L, Gautier C, Piau D
A Markovian Approach for the Analysis of the Gene Structure, Proceedings of the Prague Stringology Conference, pp.353-364

Pisanti N, Carvalho A, Marsan L , Sagot M-F
RISOTTO: Fast extraction of motifs with mismatches, LATIN’06, Springer Verlag, Lecture Notes in Computer Science, vol. 3887 pp.757-768

misc :
Daudin JJ, Lacroix V, Mariadassou M, Miele V, Picard F, Robin S, Sagot M-F
Uncovering structure in biological networks, , vol. pp.471-483

Daudin JJ, Lacroix V, Picard F, S Robin, Sagot M-F
Uncovering structure in biological networks, , vol. pp.471-483

Miele V, Vaillant C, D`Aubenton Y, Robelin D, Prum B, Thermes C
DNA sequence drives nucleosome occupancy of yeast promoters, , vol. pp.2783-2784

phdthesis :
Garel M
Conséquences de la chasse et des contraintes environnementales sur la démographie des populations d`ongulés. L`exemple du mouton méditerranéen (Ovis gmelini musimon × Ovis sp.) en France et de l`élan textit(Alces alces) en Norvège, , 2006

Payet V
Importance de la dispersion dans la dynamique de populations naturelles de punaises triatomines vecteurs de la maladie de Chagas, , 2006

Tournoud M
Adaptation du modèle de temps de promotion à l’étude du délai de détection du VIH chez l’enfant et de la survenue d’autres maladies infectieuses, , 2006

207 articles

article :
Agreil C, Fritz H, Meuret M
Maintenance of daily intake through bite mass diversity adjustment in sheep grazing on heterogeneous and variable vegetation, Applied Animal Behaviour Science, vol. 91 pp.35-36

Allali J, Sagot M-F
A new distance for high level RNA secondary structure comparison, IEEE-ACM Transactions on Computational Biology and Bioinformatics, vol. 2 pp.3-14

Allemand R
Ptilophorus (Evaniocera) dufouri (Rhipiphoridae) un Coléoptère parasite encore bien secret !, Le Coléoptériste, vol. pp.195-198

Allemand R
Agrilus viscivorus B`il`y espèc, L`entomologiste, vol. 61 pp.153-157

Allemand R, Chevin H, Withers P
Inventorier l`entomofaune grâce aux piscines..., L`entomologiste, vol. 61 pp.273-285

Amsallem E, Kasparian C, Haddour G, Boissel J-P, Nony P
Phosphodiesterase III inhibitors for heart failure, Cochrane Database of Systematic Reviews, vol. CD002230 pp.631-641

Aouacheria A, Brunet F, Gouy M
Phylogenomics of Life-or-Death Switches in Multicellular Animals: Bcl-2 BH3-, Molecular Biology and Evolution, vol. 22 pp.2395-2416

Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M
In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant, Oncogene, vol. 24 pp.6133-6142

Asselain B, Belhadj K, Bossard N, Brambilla C , Calvo F, Culine S
Cancers. Pronostics à long terme, INSERMed, vol. pp.793-799

Assigbetse K, Gueye M, Thioulouse J, Duponnois R
Soil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth dependent, Microbial Ecology, vol. 50 pp.350-359

Aubert S, Barredaa T, Acara C, Leprince P, Bonneta N, Ecochard R, Pavie A, Gandjbakhcha I
Mitral valve repair for commissural prolapse: surgical techniques and long term results, European Journal of Cardio-thoracic Surgery, vol. 28 pp.443-447

Aubert S, Henaine R, Raisky O, Chavanis N, Robin J, Écochard R, Ninet J
Atypical forms of isolated partial atrioventricular septal defect increase the risk of initial valve replacement and reoperation, European Journal of Cardio-Thoracic Surgery, vol. 28 pp.223-228

Aurell H, Farge P, Meugnier H, Gouy M, Forey F, Lina G, Vandenesch F, Etienne J, Jarraud S
Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes, Applied and Environmental Microbiology, vol. 71 pp.282-289

Écochard R
Heterogeneity the masked part of reproductive technology success rates, Revue d Epidemiologie et de santé publique, vol. 53 pp.107-117

Barna A, Baudet M, Cambou J-P, Chatellier G, Cucherat M, Dallongeville J, Durlach V, Giral P, Gueyffier F, Kownator S, Lang T, Léonard D, Pace E, Paillard F, Vallée J-P, Vergès B, Aquino J-P , Aulanier S, Balarac N, Beucler I, Bobrie G, Caporossi L, Dénolle T, D`Ivernois C, Dumarcet N, Erpeldinger S, Farnier M, Ferrières J, Fischer C, Friocourt P, Girerd X, Godin M, Halimi S, Jean T, Lièvre M, Loirat P, Lucas C, Marechaud R, Marre M, Ménard J, Mimran A, Moulin P, Picard S, Poncelet P, Pouchain D, Scarabin P-Y, Seux M-L, Senechal M, Sicard D, Turpin G, Vaisse B, Vallée J
Methods for evaluation of total cardiovascular risk, Médecine thérapeutique, vol. 11 pp.233-236

Baty F, Bihl MP, Perrière G, Culhane AC, Brutsche MH
Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data, BMC Bioinformatics, vol. 6 pp.1-12

Bazin E, Duret L, Penel S, Galtier N
Polymorphix: a sequence polymorphism database, Nucleic Acids Research, vol. 33 pp.481-484

Beauchet O, Dubost V, Herrmann F, Rabilloud M, Gonthier R, Kressig RW
Relationship between dual-task related gait changes and intrinsic risk factors for falls among transitional frail older adults, Aging clinical and experimental research, vol. 17 pp.270-275

Biémont C, Vieira C
What transposable elements tell us about genome organization and evolution: the case of Drosophila, Cytogenetics and Genome Research, vol. 110 pp.25-34

Blanchard P
On lactation and rumination in bighorn ewes (Ovis canadensis), Journal of Zoology, vol. 265 pp.107-112

Blanchard P, Festa-Bianchet M, Gaillard J-M, Jorgenson JT
Maternal condition and offspring sex ratio in polygynous ungulates: a case study of bighorn sheep., Behavioral Ecology, vol. 16 pp.274-279

Boissel J-P, Cucherat M, Nony P , Dronne MA, Kassaï B, Chabaud S
Modélisation numérique et simulation : nouvelles applications en pharmacologie, Thérapie, vol. 60 pp.1-15

Boissel J-P, Gueyffier F, Boutitie F, Pocock S, Fagard R
Apparent effect on blood pressure is only partly responsible for the risk reduction due to antihypertensive treatments, Fundamental & Clinical Pharmacology, vol. 19 pp.579-584

Boissel J-P, Nony P, Amsallem E, Mercier C, Estève J, Cucherat M
How to measure non-consistency of medical practices with available evidence in therapeutics: a methodological framework, Fundamental & Clinical Pharmacology, vol. 19 pp.591-596

Bonadona V, Sinilnikova OM, Chopin S, Antoniou AC, Mignotte H, Mathevet P, Bremond A, Martin A, Bobin JY, Romestaing P, Raudrant D, Rudigoz RC, Leone M, Chauvin F, Easton DF, Lenoir GM, Lasset C
Contribution of BRCAI and BRCA2 germ-line mutations to the incidence of breast cancer in young women: Results from a prospective population-based study in France, Genes Chromosomes & Cancer, vol. 43 pp.404-413

Bonenfant C, Gaillard J-M, Klein F, Hamann JL
Can we use the young :female ratio to infer ungulate population dynamics ? An empirical test using red deer (Cervus elaphus) as a model, Journal of Applied Ecology, vol. 42 pp.361-370

Bonnaud B, Beliaeff J, Bouton O, Oriol G, Duret L, Mallet F
Natural history of the ERVWE1 endogenous retroviral locus, Retrovirology, vol. 2 pp.1-7

Bonnefoy E, Godon P, Kirkorian G, Chabaud S, Touboul P
Significance of serum troponin I elevation in patients with acute aortic dissection of the ascending aorta, Acta Oecologia, vol. 60(2) pp.165-170

Bonnefoy E, Steg P-G, Chabaud S, Dubien P-Y, Lapostolle F, Boudet F, Lacroute J-M, Dissait F, Vanzetto G, Leizorovicz A, Touboul P
Is primary angioplasty more effective than pre-hospital fibrinolysis in diabetics with acute myocardial infarction? Data from the CAPTIM randomized clinical trial., European Heart Journal, vol. 26 pp.1712-1718

Bonnet F, Irving K, Terra JL, Nony P, Berthezène F, Moulin P
Depressive symptoms are associated with unhealthy lifestyles in hypertensive patients with the metabolic syndrome, Journal of Hypertension, vol. 23 pp.611-617

Bonnet F, Irving K, Terra JL, Nony P, Berthezène F, Moulin P
Anxiety and depression are associated with unhealthy lifestyle in patients at risk of cardiovascular disease, Atherosclerosis, vol. 178 pp.339-344

Boulétreau M, Fleury F
Les insectes parasitoïdes et leurs partenaires multiples : des surdoués du parasitisme ?, Bulletin de la Société Zoologique de France, vol. 130 pp.177-192

Boulétreau P, Chassard C, Allaouchiche B, Dumont J-C, Auboyer C, Bertin-Maghit M, Bricard H, Ecochard R, Rangaraj J, Chambrier C, Schneid C, Cynober L
Glucose-lipid ratio is a determinant of nitrogen balance during total parenteral nutritionin critically ill patients: a prospective randomized multicenter blind trial with an intention-to-treat analysis, Intensive care medicine, vol. 31 pp.1394-1400

Boulesteix M, Biémont C
Transposable elements in mosquitoes, Cytogenetics and Genome Research, vol. 110 pp.500-509

Bouysset M, Lapeyre F, Tebib J, Bonnin M, Nemoz C, Guaydier-Souquières G, Hugueny P
Footwear for the rheumatoid foot and ankle, Medecine et chirurgie du pied, vol. 21 pp.8-13

Bru C, Courcelle E, Carrere S, Beausse Y , Dalmar S, Kahn D
The ProDom database of protein domain families : more emphasis on 3D, Nucleic Acids Research, vol. 33 pp.D212-D215

Burri H, Chevalier P, Arzi M, Rubel P, Kirkorian G, Touboul P
Wavelet transform for analysis of heart rate variability preceding ventricular arrhythmias in patients with ischemic heart disease, International Journal of Cardiology, vol. 109 pp.101-107

Cadet P, Masse D, Thioulouse J
Relationships between plant-parasitic nematode community fallow duration and soil factors in the Sudano-Sahelian area of Senegal, Agriculture Ecosystems & Environment, vol. 108 pp.302-317

Calenge C, Dufour A-B, Maillard D
K-select analysis: a new method to analyse habitat selection in radio-tracking studies, Ecological Modelling, vol. 186 pp.143-153

Calenge C, Maillard D, Invernia N, Gaudin JC
Reintroduction of roe deer into a Mediterranean habitat: female mortality and dispersion, Wildlife Biology, vol. 11 pp.599-614

Calenge C, Spichiger R, Chessel D, Chatelain C
Discriminant analysis of the spatial distribution of plant species occurences : I. Theoretical aspects., Candollea, vol. 60 pp.563-575

Calteau A, Gouy M, Perrière G
Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea, Journal of Molecular Evolution, vol. 60 pp.557-565

Ceruse P, Rabilloud M, Charrie A, Dubreuil C, Disant F
Study of Cyfra 21-1 a tumo, Annals of otology rhinology and laryngology, vol. 114 pp.768-776

Cetre J-C, Nicolle M-C, Salord H, Perol M, Tigaud S, David G, Bourjault M, Vanhems P
Outbreaks of contaminated broncho-alveolar lavage related to intrinsically defective bronchoscopes, Journal of hospital infection, vol. 61 pp.39-45

Chapet O, Gerard J-P, Riche B, Alessio A, Mornex F, Romestaing P
Prognostic value of tumor regression evaluated after first course of radiotherapy for anal canal cancer, International Journal of radiation oncology biology physics, vol. 63(5) pp.1316-1324

Charif D, Thioulouse J, Lobry JR, Perrière G
Online synonymous codon usage analyses with the ade4 and seqinR packages, Bioinformatics, vol. 21 pp.545-547

Charlat S, Calmet C, Andrieu O, Mercot H
Exploring the evolution of Wolbachia compatibility types: a simulation approach, Genetics, vol. 170 pp.495-507

Charlat S, Hornett E A, Dyson E A, Ho P P, Loc N T, Schilthuizen M, Davies N, Roderick G K, Hurst G D D
Prevalence and penetrance variation of male-killing Wolbachia across Indo-Pacific populations of the butterfly Hypolimnas bolina, Molecular Ecology, vol. 14 pp.3525-3530

Charlesworth D, Charlesworth B, Marais G
Steps in the evolution of heteromorphic sex chromosomes, Heredity, vol. 95 pp.118-128

Chevalier P, Tabib A, Meyronnet D, Chalabreysse L, Restier L, Ludman V , Aliès A, Adeleine P, Thivolet F
Quantitative study of nerves of the human left atrium, Heart Rhythm, vol. 2 pp.518-522

Coulson T, Gaillard J-M, Festa-Bianchet M
Decomposing the variation in population growth into contributions from multiple demographic rates, Journal of Animal Ecology, vol. 74 pp.789-801

Couris CM, Écochard R
Utilisation du PMSI pour l`épidémiologie : faisabilité conditions d`utilisation et limites, Gestions hospitalières, vol. 449 pp.651-654

Couteron P, Ollier S
A generalized variogram-based framework for multi-scale ordination, Ecology, vol. 86 pp.828-834

Culhane AC, Thioulouse J, Perrière G, Higgins DG
MADE4: an R package for multivariate analysis of gene expression data, Bioinformatics, vol. 21 pp.2789-2790

D`Oliveira A, Voirin N, Allard R, Peyramond D, Chidiac C, Touraine J-L, Fabry J, Trepo C, Vanhems P
Prevalence and sexual risk of hepatitis C virus infection when human immunodeficiency virus was acquired through sexual intercourse among patients of the Lyon University Hospitals France 1992-2, Journal of Viral Hepatitis, vol. 12 pp.330-332

David JR, Gibert P, Legout H, Petavy G, Capy P, Moreteau B
Isofemale lines in Drosophila: an empirical approach to quantitative trait analysis in natural populations, Heredity, vol. 94 pp.3-12

Décelière G, Charles S, Biémont C
The Dynamics of Transposable Elements in Structured Populations, Genetics, vol. 169 pp.467-474

De Palma C, Viggiano E, Barillari E, Palme R, Dufour A-B, Fantini C, Natoli E
Evaluating the temperament in shelter dogs, Journal of Behavior, vol. 142 pp.1307-1328

Debard A-L, Lamy B, Monneret G, Mira J P, Pachot A, Kleijer M, Aillaud M F, Boibieux A, Bienvenu J, Carret G, Fournier G, Bohe J
Fc$gamma$RIIIb and complement component C7 codeficiency in a patient with recurrence of fulminant meningococcal septic shock, Clinical Infectious Diseases, vol. 40 pp.1679-1683

Dedeine F, Boulétreau M, Vavre F
Wolbachia requirement for oogenesis: occurrence within the genus Asobara (Hymenoptera Braconidae) and evidence for intraspecific variation in A. tabida, Heredity, vol. pp.267-282

Delignette-Muller M-L, Baty F, Cornu M, Bergis H
Modelling the effect of a temperature shift on the lag phase duration of Listeria monocytogenes, International Journal of Food Microbiology, vol. 100 pp.77-84

Delpuech J-M, Bardon C, Boulétreau M
Increase of the Behavioral Response to Kairomones by the Parasitoid Wasp Leptopilina heterotoma Surviving Insecticides, Archives of Environmental Contamination Toxicology, vol. 49 pp.186-191

Demarquay G, Derex L, Nighoghossian N, Adeleine P, Philippeau F, Honnorat J, Trouillas P
Ethical Issues of Informed Consent in Acute Stroke, Cerebrovascular Diseases, vol. 19 pp.65-68

Derex L, Hermier M, Adeleine P, Pialat JB, Wiart M, Berthezène Y, Philippeau F, Honnorat J, Froment JC , Trouillas P, Nighoghossian N
Clinical and imaging predictors of intracerebral haemorrhage in stroke patients treated with intravenous tissue plasminogen activator, Journal of Neurology Neurosurgery and Psychiatry, vol. 76 pp.70-75

Dernburg A, Rogier-Saderne M-C, Chauve C, Zenner L
Consequences of the withdrawal of dimetridazole on intestinal parasitism in ducks, Veterinary Record, vol. 156(5) pp.148-150

Desouhant E, Driessen G, Amat I, Bernstein C
Host and food searching in a parasitic wasp Venturia canescens: a trade-off between current and future reproduction?, Animal Behaviour, vol. 70 pp.145-152

Devulder G, Perouse de Montclos M, Flandrois J-P
A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model, International Journal of Systematic and Evolutionary Microbiology, vol. 55 pp.293-302

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases, Bioinformatics, vol. 21 pp.2596-2603

Duponnois R, Colombet A, Hien V, Thioulouse J
The mycorrhizal fungus Glomus intraradices and rock phosphate amendment influence plant growth and microbial activity in the rhizosphere of Acacia holosericea, Soil Biology and Biochemistry, vol. 37 pp.1460-1468

Duponnois R, Paugy M, Thioulouse J, Masse D, Lepage M
Functional diversity of soil microbial community rock phosphate dissolution and growth of Acacia seyal as influenced by grass- litter- and soil-feeding termite nest structure amendments, Geoderma, vol. 124 pp.349-361

Duret L
Les trésors cachés du génome humain, Pour la Science, vol. pp.16-21

Duriez O, Ferrand Y, Binet F, Corda E, Gossmann F, Fritz H
Habitat selection of the Eurasian woodcock in winter in relation to earthworms availability, Biological Conservation, vol. 122 pp.479-490

Duriez O, Fritz H, Binet F, Tremblay Y, Ferrand Y
Individual activity rates in wintering Eurasian woodcocks: starvation versus predation risk trade-off?, Animal Behaviour, vol. 69 pp.39-49

Duriez O, Fritz H, Saïd S, Ferrand Y
Wintering behaviour and spatial ecology of Eurasian Woodcock Scolopax rusticola in western France, Ibis, vol. 147 pp.519-532

Fleurance G, Duncan P, Fritz H, Cabaret J, Gordon IJ
Importance of nutritional and anti-parasite strategies in the foraging decisions of horses: an experimental test, Oikos, vol. 110 pp.602-612

Forsyth DM, Duncan RP, Tustin KG, Gaillard J-M
A substantial energetic cost to male reproduction in a sexually dimorphic ungulate., Ecology, vol. 86 pp.2154-2163

Gaillard J-M, Yoccoz NG, Lebreton J-D, Bonenfant C, Devillard S, Loison A, Pontier D, Allainé D
Generation time: a reliable metric to measure life-history variation among mammalian populations, The American Naturalist, vol. 166 pp.119-123

Garait B, Couturier K, Servais S, Letexier D, Perrin D, Batandier C, Rouanet J-L, Sibille B, Rey B, Leverve X, Favier R
Fat intake reverses the beneficial effect of low caloric intake on skeletal muscle mitochondrial H2O2 production, Free Radical Biology and Medicine, vol. 39 pp.1249-1261

Garel M, Cugnasse J-M, Gaillard J-M, Loison A, Gibert P, Douvre P, Dubray D
Reproductive output of female mouflon (Ovis gmelini musimon x Ovis sp.): a comparative analysis", Journal of Zoology, vol. 266 pp.65-71

Garel M, Cugnasse J-M, Gaillard J-M, Loison A, Santosa Y, Maublanc ML
Effects of observer experience on the monitoring of a mouflon population, Acta Theriologica, vol. 50 pp.109-114

Garel M, Cugnasse J-M, Loison A, Gaillard J-M, Vuiton C, Maillard D
Monitoring the abundance of mouflon in South France, European Journal of Wildlife Research, vol. 51 pp.69-76

Garel M, Cugnasse J-M, Maillard D
Reliability of mouflon aging using morphological characteristics from observations in the field, Wildlife Biology, vol. 11 pp.229-235

Gaucel S, Langlais M, Pontier D
Invading introduced species in insular heterogeneous environments, Ecological Modelling, vol. 188 pp.62-75

Gaucel S, Pontier D
How predator food preference can change the destinity of native prey in predator-prey systems, Biological Invasions, vol. 7 pp.795-806

Giard M, Boibieux A, Ponceau B, Biron F, Braun E, Issartel B, Lalain C, Lippmann J, Daoud F, Delbrassine C, Delorme C, Chidiac C, Peyramond D
Interruption thérapeutique chez des patients infectés par le virus de l`immunodéficience humaine : évolution clinique et biologique, Medecine et Maladies Infectieuses, vol. 35 pp.525-529

Giard M, Debeaudrap P, Vanhems P
Incidence et prévalence, Hygiénes, vol. 13 pp.9-10

Ginolhac A, Jarrin C, Robe P, Perrière G, Vogel TM, Simonet P, Nalin R
Type I polyketide synthases may have evolved through horizontal gene transfer, Journal of Molecular Evolution, vol. 60 pp.716-725

Govaerts C, Srinivasan S , Shapiro A, Zhang S, Picard F, Clement K, Lubrano-Berthelier C, Vaisse C
Obesity-associated mutations in the melanocortin-4 receptor provide novel insights into its function, Peptides, vol. 26 pp.1909-1919

Grando J, Tristan A, Vanhems P, Célard M, Lehot J-J, Bastien O, Vandenesch F
Weight as a Risk Factor of Mediastinitis After Cardiac Surgery in Context of Insufficient Dosage of Prophylactic Antibiotic, The Annals of Thoracic Surgery, vol. 80 pp.383-384

Guéguen L
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incollection :
Pisanti N, Crochemore M, Grossi R, Sagot M-F
A comparative study of bases for motif inference, article in: String algorithmics, King`s College Publications, pp.195-226

Pisanti N, Sagot M-F
Network expression inference, article in: Applications of Combinatorics on Words, Cambridge University Press, pp.227-250

Veneti Z, Reuter M, Montenegro H, Hornett EA, Charlat S, Hurst G D D
Interactions between inherited bacteria and their hosts: The Wolbachia paradigm, article in: The Influence of Cooperative Bacteria on Animal Host Biology, Cambridge University Press, pp.119-141

inproceedings :
Allali J, Sagot M-F
A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison, SPIRE`05, , Lecture note in computer science, vol. 3772 pp.412-425

Cambouropoulos E, Crochemore M, Lliopoulos C, Mohamed M, Sagot M-F
A pattern extraction algorithm for abstract melodic representations that allow partial overlapping of intervallic categories, The 6th International Conference on Music Information Retrieval ISMIR`05, pp.167-174

Carvalho A, Freitas AT, Oliveira AL, Sagot M-F
A highly scalable algorithm for the extraction of cis-regulatory regions, Proceedings of 3rd Asia-Pacific Bioinformatics Conference (APBC`05), Imperial College Press, Advances in Bioinformatics and Computational Biology pp.273-282

Lacroix V, Fernandes CG, Sagot M-F
Reaction motifs in metabolic networks, Proceedings of WABI `05, Springer-Verlag, Lecture Notes in Computer Science, vol. 3692 pp.178-191

Peterlongo P, Pisanti N, Boyer F, Sagot M-F
Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure the Bi-Factor Array, SPIRE`05, Springer Verlag, Lecture note in computer science, vol. 3772 pp.124-135

Sagot M-F, Tannier E
Perfect sorting by reversals, Proceedings of COCOON`05, Springer-Verlag, Lecture Notes in Computer Science, vol. 3595 pp.42-51

phdthesis :
Melodelima C
Développement d’une approche markovienne pour l’analyse de l’organisation des génomes, , 2005

techreport :
Kaiser L, Delpuech J-M, Kreiter PH, Reboulet JN, Desneux N, Rafalimanana H, Thaon M
Evaluation des effets sublétaux d`insectisides sur des insectes auxiliaires entomophagesINRA, 2005