UMR CNRS 5558 Laboratoire de Biométrie et Biologie Évolutive

27 articles

article :

Amour S, Voirin N, Regis C, Bouscambert-Duchamp M, Comte B, Coppéré B, Pires-Cronenberger S, Lina B, Vanhems P (2012)
Influenza vaccine effectiveness among adult patients in a University of Lyon hospital (2004–2009), Vaccine, vol. 30 pp.821-824

Artigas J, Arts G, Babut M, Caracciolo Barra A, Charles S, Chaumot A, Combourieu B, Dahllöf I, Despréaux D, Ferrari B, Friberg N, Garric J, Geffard O, Gourlay-Francé C, Hein M, Hjorth M, Krauss M, De Lange H J, Lahr J, Lehtonen K K, Lettieri T, Liess M, Lofts S, Mayer P, Morin S, Paschke A, Svendsen C, Usseglio-Platera P, Van den Brink N, Vindimian E, Williams R (2012)
Towards a renewed research agenda in ecotoxicology, Environmental Pollution, vol. 160 pp.201-206

Baldazzi V, Ropers D, Geiselmann J, Kahn D, de Jong H (2012)
Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli, Journal of Theoretical Biology, vol. 295 pp.100-115

Billoir E, Delhaye H, Forfait C, Clément B, Triffault-Bouchet G, Charles S, Delignette-Muller M-L (2012)
Comparison of bioassays with different exposure time patterns : The added value of dynamic modelling in predictive ecotoxicology, Ecotoxicology and Environmental Safety, vol. 75 pp.80-86

Brochier-Armanet C, Gribaldo S, Forterre P (2012)
Spotlight on the Thaumarchaeota, ISME, vol. 6(2) pp.227-30

Chevalier F, Herbinière-Gaboreau J, Charif D, Mitta G, Gavory F, Wincker P, Grève P, Braquart-Varnier C, Bouchon D (2012)
Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in /Armadillidium vulgare, BMC Microbiology, vol. 12 pp.1-18

Danieli C, Remontet L, Bossard N, Roche L, Belot A (2012)
Estimating net survival : the importance of allowing for informative censoring, Statistics in medicine, vol. pp.268-276

De Bari B, Erraisse M A, Chekrine T, Rabilloud M, Shakir I S, Lebras L, Favrel V (2012)
Does weight loss predict accuracy of setup in head and neck cancer patients treated with Intensity-Modulated Radiation Therapy?, Radiol Med, vol. pp.909-930

Forfait C, Charles S, Billoir E, Delignette-Muller M-L (2012)
Survival data analyses in ecotoxicology: critical effect concentrations methods and models. What should we use?, Ecotoxicology, vol. pp.532-540

Froissart L, Bernstein C, Humblot L, Amat I, Desouhant E (2012)
Facing multiple information sources while foraging on successive patches: how does a parasitoid deal with experience?, Animal Behaviour, vol. 83 pp.189-199

Hellard E, Pontier D, Sauvage F, Poulet H, Fouchet D (2012)
True versus False Parasite Interactions: A Robust Method to Take Risk Factors into Account and Its Application to Feline Viruses, PLoS ONE, vol. 7 pp.1-10

Henri H, Mouton L (2012)
High-Resolution Melting technology: a new tool for studying the Wolbachia endosymbiont diversity in the field, Molecular Ecology Resources, vol. 12 pp.75-81

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood T K, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn R D, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn A F, Rivoire C, Sangrador-Vegas A, Selengut J D, Sigrist C J A, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas P D, Wu C H, Yeats C, Yong S-Y (2012)
InterPro in 2011: new developments in the family and domain prediction database, Nucleic Acids Research, vol. 40 pp.D306-D312

Kremer N, Charif D, Henri H, Gavory F, Wincker P, Mavingui P, Vavre F (2012)
Influence of Wolbachia on host gene expression in an obligatory symbiosis, BMC Microbiology, vol. 12 pp.1-16

Lardy S, Cohas A, Desouhant E, Tafani M, Allainé D (2012)
Paternity and Dominance Loss in Male Breeders: The Cost of Helpers in a Cooperatively Breeding Mammal, PLoS one, vol. 7 pp.1-6

Lemoine M, Doligez B, Richner H (2012)
On the Equivalence of Host Local Adaptation and Parasite Maladaptation: An Experimental Test, THE AMERICAN NATURALIST, vol. 179 pp.270-281

Martinez J, Fleury F, Varaldi J (2012)
Heritable variation in an extended phenotype: the case of a parasitoid manipulated by a virus, Evolutionary Biology, vol. 25 pp.54-65

Narasingarao P, Podell S, Ugalde J A, Brochier-Armanet C, B Emerson J, Brocks J J, Heidelberg K B, Banfield J F, Allen E E (2012)
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities, ISME, vol. 6 pp.81-93

Ndiaye A, Bâ K, Vladimir A, Benazzou T, Chevret P, Konecny A, Sembène M, Tatard C, Kergoat GJ, Granjon L (2012)
Evolutionary systematics and biogeography of endemic gerbils (Rodentia Muridae) from Morocco: an integrative approach, Zoologica Scripta, vol. 41 pp.11-28

Palazy L, Bonenfant C, Gaillard JM, Courchamp F (2012)
Rarity trophy hunting and ungulates, Animal Conservation, vol. pp.76-81

Pelisson P-F, Bel-Venner M-C, Rey B, Burgevin L, Martineau F, Fourel F, Lecuyer C, Menu F, Venner S (2012)
Contrasted breeding strategies in four sympatric sibling insect species: when a proovigenic and capital breeder copes with a stochastic environment, Functional Ecology, vol. pp.1-9

Quenet S, Laroche J-P, Bertoletti L, Quéré I, Décousus H, Becker F, Leizorovicz A (2012)
Value of a Planned Compression Ultrasonography after an Isolated Superficial Vein Thrombosis: Results from a Prospective Multicentre Study, European Journal of Vascular and Endovascular Surgery, vol. 43 pp.233-237

Rahmi A, Deshayes E, Maucort-Boulch D, Varron L, Grange J-D, Kodjikian L, Seve P (2012)
Intraocular sarcoidosis: association of clinical characteristics of uveitis with findings from F-labelled fluorodeoxyglucose positron emission tomography, British Journal of Ophthalmology, vol. 96 pp.99-103

Rouviere O, Papillard M, Girouin N, Boutier R, Rabilloud M, Riche B, Mege-Lechevallier F, Colombel M, Gelet A (2012)
Is it possible to model the risk of malignancy of focal abnormalities found at prostate multiparametric MRI?, European radiology, vol. pp.490-497

Vigneron A, Charif D, Vincent-Monégat C, Vallier A, Gavory F, Wincker P, Heddi A (2012)
Host gene response to endosymbiont and pathogen in the cereal weevil Sitophilus oryzae, BMC Microbiology, vol. 12 pp.1-15

Wesuls D, Oldeland J, Dray S (2012)
Disentangling plant trait responses to livestock grazing from spatio-temporal variation: the partial RLQ approach, Journal of Vegetation Science, vol. 23 pp.98-113

inproceedings :

Lenne R, Solnon C, Stützle T, Tannier E, Birattari M (2012)
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem, EvoCOP 2008, Springer Verlag, Lecture Notes in Computer Science, vol. 4972 pp.266-276

210 articles

article :

Amouric A, Brochier-Armanet C, Johnson D B, Bonnefoy V, Hallberg K B (2011)
Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways, Microbiology, vol. 155 pp.111-122

Arnan X, Ferrandiz-Rovira M, Pladevall C, Rodrigo A (2011)
Worker size-related task partitioning in the foraging strategy of a seed-harvesting ant species, Behav Ecol Sociobiol, vol. 65 pp.1881-1890

Arrouays D, Saby NPA, Thioulouse J, Jolivet C, Boulonne L, Ratié C (2011)
Large trends in French topsoil characteristics are revealed by spatially constrained multivariate analysis, Geoderma, vol. 161 pp.107-114

Artois M, Blancou J, Dupeyroux O, Gilot-Fromont E (2011)
Sustainable control of zoonotic pathogens in wildlife: how to be fair to wild animals?, Rev Sci Tech OIE, vol. 30 pp.733-743

Auclair J, Vaissière T, Desseigne F, Lasset C, Bonadona V, Giraud S, Saurin J-C, Joly MO, Leroux D, Faivre L, Audoynaud C, Montmain G, Ruano E, Herceg Z, Puisieux A, Qinq W (2011)
Intensity-Dependent Constitutional MLHI promoter methylation leads to early onset of colorectal cancer by affecting both alleles, Genes chromosomes & cancer, vol. 50(3) pp.178-185

Auxilien S, Rasmussen A, Rose S, Brochier-Armanet C, Husson C, Fourmy D, Grosjean H, Douthwaite S (2011)
Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases, RNA, vol. 17(1) pp.45-53

Avril A, Léonard Y, Letty J, Péroux R, Guitton J-S, Pontier D (2011)
Natal dispersal of European hare in a high-density population, Mammalian biology, vol. 76(2011) pp.148-156

Bachy E, Bernaud J, Roy P, Rigal D, Nicolini F-E (2011)
Quantitative and functional analyses of CD4+CD25+FoxP3+ regulatory T cells in chronic phase chronic myeloid leukaemia patients at diagnosis and on imatinib mesylate, British Journal of Haematology, vol. 153 pp.129-143

Bailly-Bechet M, Benecke A, Hardt WD, Lanza V, Sturm A, Zecchina R (2011)
An externally modulated noise-driven switch for the regulation of SPI1 in Salmonella enterica serovar Typhimurium, Journal of Mathematical Biology, vol. pp.1-26

Bailly-Bechet M, Borgs C, Braunstein A, Chayes J, Dagkessamanskaia A, François JM, Zecchina R (2011)
Finding undetected protein associations in cell signaling by belief propagation, Proceedings of The National Academy of Sciences of The United States of America, vol. 108 pp.882-887

Bastard M, Fall MBK, Lanièce I, Taverne B, Desclaux A, Ecochard R, Sow PPS, Delaporte E, Etard JF (2011)
Revisiting Long-Term Adherence to Highly Active Antiretroviral Therapy in Senegal Using Latent Class Analysis, Journal of Acquired Immune Deficiency Syndromes (JAIDS), vol. 57 pp.55-61

Baudu A, Lot F, Abiteboul D, L’Hériteau F, Touche S, Girard M, Jarno P, Venier A-G, Bouvet E, Rabaud C, Floret N (2011)
Suivi des accidents exposant au sang chez les professionnels de santé non immunisés et exposés au VHB 2005-2007 (France), BEH, vol. pp.388-391

Belot A, Remontet L, Launoy G, Jooste V, Giorgi R (2011)
Competing risk models to estimate the excess mortality and the first recurrent-event hazards, BMC Medical Research Methodology, vol. 11(78) pp.1-31

Belouze M, Sibille B, Rey B, Roussel D, Romestaing C, Teulier L, Baetz D, Koubi H, Servais S, Duchamp C (2011)
Leanness of Lou/C rats does not require higher thermogenic capacity of brown adipose tissue, Physiology & Behavior, vol. 104 pp.893-899

Ben Hania W, Ghodbane R, Postec A, Brochier-Armanet C, Hamdi M, Fardeau M-L, Ollivier B (2011)
Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales, Systematic and Applied Microbiology, vol. 34 pp.581-5

Bergeron M, Dauwalder O, Gouy M, Freydiere A-M, Bes M, Meugnier H, Benito Y, Etienne J, Lina G, Vandenesch F, Boisset S (2011)
Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry, European Journal of Clinical Microbiology & Infectious Diseases, vol. 30(3) pp.343-354

Berthoumieux S, Brilli M, de Jong H, Kahn D, Cinquemani E (2011)
Identification of metabolic network models from incomplete high-throughput datasets, Bioinformatics, vol. 27 pp.i186-i195

Billoir E, Delhaye H, Clément B, Delignette-Muller M-L, Charles S (2011)
Bayesian modelling of daphnid responses to time-varying cadmium exposure in laboratory aquatic microcosms, Ecotoxicology and Environmental Safety, vol. 74 pp.380-388

Blavet N, Charif D, Oger-Desfeux C, Marais G, Widmer A (2011)
Comparative high-throughput transcriptome sequencing and development of SiESTa the Silene EST annotation database, BMC Genomics, vol. 12 pp.1-11

Body G, Ferté H, Gaillard J-M, Delorme D, Klein F, Gilot-Fromont E (2011)
Population density and phenotypic attributes influence the level of nematode parasitism in roe deer, Oecologia, vol. 167 pp.635-646

Boileau C, Eme L, Brochier-Armanet C, Janicki A, Zhang C-C, Latifi A (2011)
A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120, New phytol., vol. 191(4) pp.1108-18

Bonadona V, Bonaïti B, Olschwang S, Grandjouan S, Huiart L, Longy M, Guimbaud R, Buecher B, Bignon YJ, Caron O, Colas C, Noguès C, Lejeune-Dumoulin S, Olivier-Faivre L, Polycarpe-Ozaer F, Nguyen TD, Desseigne F, Saurin J-C, Berthet P, Leroux D, Duffour J, Manouvrier S, Frébourg T, Sobol H, Lasset C, Bonaïti-Pellié C (2011)
Cancer risks associated with germline mutations in MLH1 MSH3 and MSH6 genes in Lynch Syndrome, The Journal of the American Medical Association, vol. 305(22) pp.2304-2310

Bonaïti B, Alarcon F, Bonadona V, Pennec S, Andrieu N, Stoppa-Lyonnet D, Perdry H, Bonaïti-Pellié C (2011)
, Bulletin du Cancer, vol. 98(7) pp.779-795

Bonnefoy M, Boutitie F, Mercier C, Gueyffier F, Carré C, Guetemme G, Ravis B, Laville M, Cornu C (2011)
EFFICACY OF A HOME-BASED INTERVENTION PROGRAMME ON THE PHYSICAL ACTIVITY LEVEL AND FUNCTIONAL ABILITY OF OLDER PEOPLE USING DOMESTIC SERVICES: A RANDOMISED STUDY, The Journal of Nutrition Health and Aging, vol. pp.1-8

Bourbeau-Lemieux A, Festa-Bianchet M, Gaillard J-M, Pelletier F (2011)
Predator-driven component Allee effects in a wild ungulate, Ecology Letters, vol. 14 pp.352-363

Bourgoin G, Garel M, Blanchard P, Dubray D, Maillard D, Gaillard J-M (2011)
Daily responses of mouflon (Ovis gmelini musimon × Ovis sp.) activity to summer climatic conditions, Can. J. Zool, vol. 89 pp.765-773

Bourlet T, Signori-Schmuck A, Roche L, Icard V, Saoudin H, Trabaud MA, Tardy JC, Morand P, Pozzetto B, Ecochard R, André P (2011)
HIV-1 Load Comparison Using Four Commercial Real-Time Assays, Journal of Clinical Microbiology, vol. 49(1) pp.292-297

Boussageon R, Bejan-Angoulvant T, Saadatian-Elahi M, Lafont S, Bergeonneau C, Kassaï B, Erpeldinger S, Wright JM, Gueyffier F, Cornu C (2011)
Effect of intensive glucose lowering treatment on all cause mortality cardiovascular death and microvascular events in type 2 diabetes: meta-analysis of randomised controlled trials, British Medical Journal, vol. 343 pp.1-12

Boutier R, Girouin N, Cheikh A B, Belot A, Rabilloud M, Gelet A, Chapelon J Y, Rouviere O (2011)
Location of residual cancer after transrectal high-intensity focused ultrasound ablation for clinically localized prostate cancer, BJU international, vol. 108 pp.1776-1781

Boutitie F, Pinede L, Schulmann S, Agnelli G, Raskob G, Julian J, Hirsh J, Kearon C (2011)
Influence of preceding length of anticoagulant treatment and initial presentation of venous thromboembolism on risk of recurrence after stopping treatment: analysis of individual participants’ data from seven trials, BMJ (Clinical research ed.), vol. 342 pp.1543-1553

Bouvet L, Da-Col W, Chassard C, Daléry F, Ruynat L, Allaouchiche B, Dantony E, Boselli E (2011)
ED50 and ED95 of intrathecal levobupivacaine with opioids for Caesarean delivery, British Journal of Anaesthesia, vol. 106(2) pp.215-220

Bouysset M, Coury F, Damiano J, Bonnin M, Vianney J-C, Duivon J-P, Sprunck N, Nemoz C, Tebib J (2011)
Calcaneal involvement in rheumatoid arthritis and in a control group (X-ray study), Médecine et chirurgie du pied, vol. 27 pp.52-56

Branca A, Le Ru BP, Vavre F, Silvain J-F, Dupas S (2011)
Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection, Molecular Ecology, vol. 20 pp.959-971

Brind`Amour A, Boisclair D, Dray S, Legendre P (2011)
Relationships between species feeding traits and environmental conditions in fish communities: a three-matrix approach, Ecological Applications, vol. 21(2) pp.363-377

Brochier-Armanet C, Deschamps P, Lopez-Garcia P, Zivanovic Y, Rodriguez-Valera F, Moreira D (2011)
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic Thaumarchaeota and Euryarchaeota, ISME, vol. 5(8) pp.1291-302

Brochier-Armanet C, Forterre P, Gribaldo S (2011)
Phylogeny and Evolution of the Archaea: one Hundred Genomes Later, Current opinion in microbiology, vol. 14 pp.274-81

Buiret G, Launoy G, Remontet L, Bossard N, Iwaz J, Belot A, Ecochard R (2011)
Diversité des modèles d`évolution des incidences : implication en cancérogenèse ?, Revue des Maladies Respiratoires, vol. 28 pp.41-50

Burgos Leon-Dijan C, Bourguignon L, Späth H-M, Maire P (2011)
Étude coût-efficacité de l’adaptation bayésienne des posologies des aminosides en gériatrie, Pharmacoéconomie, vol. 66 pp.445-452

Caspi-Fluger A, Inbar M, Mozes-Daube N, Mouton L, Hunter MS, Zchori-Fein E (2011)
Rickettsia ‘In’ and ‘Out’: Two Different Localization Patterns of a Bacterial Symbiont in the Same Insect Species, PLoS ONE, vol. 6(6) pp.1-6

Chaabna K, Boniol M, de Vuyst H, Vanhems P, de Avila Vitoria M A, Curado M-P (2011)
Geographical patterns of Kaposi’s sarcoma nonHodgkin lymphomas and cervical cancer associated with HIV infection in five African populations, European Journal of Cancer Prevention, vol. pp.188-195

Chardonnet F, Delava E, Foray V, Multeau C, Vigneron A, Mondy N (2011)
The French touch in entomological biology: synthesis of the “16th Colloque Biologie de l’Insecte”, Ann. soc. entomol. Fr., vol. 47 pp.524-527

Chidiac C, Che D, Pires-Cronenberger S, Jarraud S, Campese C, Bissery A, Weinbreck P, Brun-Buisson C, Sollet J-P, Ecochard R, Desenclos J-C, Etienne J, Vanhems P (2011)
Factors associated with hospital mortality in community-acquired legionellosis in France, European respiratory journal, vol. pp.188-103

Choquet R, Viallefont A, Rouan L, Gaanoun K, Gaillard J-M (2011)
A semi-Markov model to assess reliably survival patterns from birth to death in free-ranging populations, Methods in Ecology and Evolution, vol. 2 pp.383-389

Chureau C, Chantalat S, Romito A, Galvani A, Duret L, Avner P, Rougeulle C (2011)
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region, Human Molecular Genetics, vol. 20(4) pp.705-718

Ciliberti A, Berny P, Delignette-Muller M-L, de Buffrénil V (2011)
The Nile monitor (Varanus niloticus; Squamata: Varanidae) as a sentinel species for lead and cadmium contamination in sub-Saharan wetlands, Science of the Total Environment, vol. 409 pp.4735-4745

Colin C, Devic C, Noel A, Rabilloud M, Zabot M T, Pinet-Isaac S, Giraud S, Riche B, Valette P J, Rodriguez-Lafrasse C, Foray V (2011)
DNA double-strand breaks induced by mammographic screening procedures in human mammary epithelial cells, International Journal of Radiation Biology, vol. 87 pp.1103-1112

Corm S, Roche L, Micol J-B, Coiteux V, Bossard N, Nicolini F-E, Iwaz J, Preudhomme C, Roche-Lestienne C, Facon T, Remontet L (2011)
Changes in the dynamics of the excess mortality rate in chronic phase-chronic myeloid leukemia over 1990-2007: a population study, Blood, vol. 118 pp.4331-4337

Cornu C, Nony P (2011)
Women Were Included Twice in a Meta-Analysis, THE AMERICAN JOURNAL of MEDICINE, vol. pp.1-1

Cornu M, Billoir E, Bergis H, Beaufort A, Zuliani V (2011)
Modeling microbial competition in food: Application to the behavior of Listeria monocytogenes and lactic acid flora in pork meat products, Food Microbiology, vol. 28 pp.639-647

Cotte L, Voirin N, Richard C, Brochier C, Schlienger I, Lack P, Lina B, Vanhems P, Zoulim F (2011)
Factors associated with pandemic influenza A/H1N1 vaccine coverage in a French cohort of HIV-infected patients, Vaccine, vol. pp.1-7

Couderc C, Carbonne A, Thiolet J-M, Brossier F, Savey A, Bernet C, Ortmans C, Lecadet-Morin C, Coudière I, Aggoune M, Astagneau P, Coignard B, Cambau E (2011)
Infections à mycobactéries atypiques liées à des soins esthétiques en France 2001-2010, Médecine et maladies infectieuses, vol. 3146 pp.1-5

Coumes-Florens S, Brochier-Armanet C, Guiseppi A, Denizot F, Foglino M (2011)
A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System, PLOS one, vol. 6 pp.789-801

Cusack BP, Arndt PF, Duret L, Roest Crollius H (2011)
Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes, PLoS GENETICS, vol. 7 pp.1-13

Debernardi A, Suzanne E, Formant A, Pène L, Dufour A-B, Lobry JR (2011)
One year variability of peak heights heterozygous balance and inter-locus balance for the DNA positive control of AmpFlSTR Identifiler STR kit, Forensic Science International: Genetics, vol. 5 pp.43-49

De Boeck K, Bulteel V, Tiddens H, Wagner T, Fajac I, Conway S, Dufour F, Smyth AR, Lee T, Serment I, Kassaï B, Elborn S (2011)
Guideline on the design and conduct of cystic fibrosis clinical trials: The European Cystic Fibrosis Society–Clinical Trials Network (ECFS-CTN), Journal of Cystic Fibrosis, vol. 10 suppl 2 pp.S67-S74

de Boer H J, Vongsombath C, Käfer J (2011)
A Fly in the Ointment: Evaluation of Traditional Use of Plants to Repel and Kill Blowfly Larvae in Fermented Fish, PLoS one, vol. 6 pp.1-6

Décousus H, Bertoletti L, Frappé P, Becker F, El Jaouhari A, Mismetti P, Moulin N, Presles E, Quéré I, Leizorovicz A (2011)
Recent findings in the epidemiology diagnosis and treatment of superficial-vein thrombosis, Thrombosis Research, vol. 127(3) pp.81-85

Delignette-Muller M-L, Forfait C, Billoir E, Charles S (2011)
A NEW PERSPECTIVE ON THE DUNNETT PROCEDURE : FILLING THE GAP BETWEEN NOEC/LOEC AND ECx CONCEPTS, Environmental Toxicology and Chemistry, vol. 30 pp.2888-2891

Delpuech J-M, Allemand R (2011)
Side effects of fungicides on the abundance and the species diversity of the natural populations of Drosophila and their hymenopterous parasitoids in orchards, Phytoparasitica, vol. 39 pp.429-435

Deniélou Y-P, Sagot M-F, Boyer F, Viari A (2011)
Bacterial syntenies: an exact approach with gene quorum, BMC Bioinformatics, vol. 12(193) pp.1-15

Denoeud F, Roussel M, Noel B, Wawrzyniak I, Da Silva C, Diogon M, Viscogliosi E, Brochier-Armanet C, Couloux A, Poulain J, Segurens B, Anthouard V, Texier C, Blot N, Poirier P, Choo Ng G, Tan K S W, Artiguenave F, Jaillon O, Aury J-M, Delbac F, Wincker P, Vivarès C P, El Alaoui H (2011)
Genome sequence of the stramenopile Blastocystis a human anaerobic parasite, Genome Biology, vol. 12 pp.94-101

Dequiedt S, Saby NPA, Lelievre M, Jolivet C, Thioulouse J, Toutain B, Arrouays D, Bispo A, Lemanceau P, Ranjard L (2011)
Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management, Global Ecology and Biogeography, vol. 20 pp.641-652

Descamps C, Labeeuw M, Trolliet P, Cahen R, Ecochard R, Pouteil-Noble C, Villar E (2011)
Confounding factors for early death in incident end-stage renal disease patients: Role of emergency dialysis start, Hemodialysis International, vol. 15(1) pp.23-29

Desmond E, Brochier-Armanet C, Forterre P, Gribaldo S (2011)
On the last common ancestor and early evolution of eukaryotes: Reconstructing the history of mitochondrial ribosomes, Res Microbiol, vol. 162 pp.53-70

Devillard S, Santin-Janin H, Say L, Pontier D (2011)
Linking genetic diversity and temporal fluctuations in population abundance of the introduced feral cat (Felis silvestris catus) on the Kerguelen archipelago, Molecular Ecology, vol. 20 pp.5141-5153

Doligez B, Daniel G, Warin P, Pärt T, Gustafsson L, Réale D (2011)
Estimation and comparison of heritability and parent–offspring resemblance in dispersal probability from capture–recapture data using different methods: the Collared Flycatcher as a case study, Ornithol, vol. pp.1-16

Dorval M, Noguès C, Berthet P, Chiquette J, Gauthier-Villars M, Lasset C, Picard C, Plante M, Simard J, Julian-Reynier J (2011)
Breast and ovarian cancer screening of non-carriers from BRCA1/2 mutation-positive families: 2-year follow-up of cohorts from France and Quebec, European journal of human Genetics, vol. 19(5) pp.494-499

Dray S (2011)
A new perspective about Moran`s Coefficient: Spatial autocorrelation as a linear regression problem, Geographical Analysis, vol. 43 pp.127-141

Dray S, Jombart T (2011)
Revisiting Guerry`s data: introducing spatial constraints in multivariate analysis., The Annals of Applied Statistics, vol. 5 pp.2278-2299

Driessen M, Bouvier A-M, Dupont C, Khoshnood B, Rudigoz R, Deneux-Tharaux C (2011)
Postpartum Hemorrhage Resulting From Uterine Atony After Vaginal Delivery, Obstetrics & Gynecology, vol. 117(1) pp.21-31

Dubourg J, Javouhey E, Geeraerts T, Messerer M, Kassaï B (2011)
Ultrasonography of optic nerve sheath diameter for detection of raised intracranial pressure: a systematic review and meta-analysis, Intensive care medicine, vol. pp.1-10

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Version française des questionnaires de dépistage de l`autisme de haut niveau ou du syndrome d`Asperger chez l`adolescent : Quotient du spectre de l`autisme Quotient d`Empathie et Quotient de Systématisation. Protocole et traduction des questionnaires, La presse médicale, vol. pp.1-15

Stehlé J, Voirin N, Barrat A, Cattuto C, Colizza V, Isella L, Regis C, Pinton J-F, Khanafer N, Van den Broeck W, Vanhems P (2011)
Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees, BMC Medicine, vol. 9(87) pp.1-48

Stehlé J, Voirin N, Barrat A, Cattuto C, Isella L, Pinton J-F, Quaggiotto M, Van den Broeck W, Regis C, Lina B, Vanhems P (2011)
High-Resolution Measurements of Face-to-Face Contact Patterns in a Primary School, PLoS one, vol. 6 pp.1-13

Subtil F (2011)
Comments ont the article of C.-Y Lai L. tian and E.F. Schisterman ont the "Exact confience interval estimation for the Youden index and its corresponding optimal cut-point", Computational Statistics and Data Analysis, vol. 55 pp.3379-3380

Supper I, Ecochard R, Bois C, Paumier F, Bez N, Lettrilliart L (2011)
How do French GPs consider participating in primary care research: the DRIM study, Family Practice, vol. 28 pp.226-232

Tannier E (2011)
Preface : Satellite Workshop on Comparative Genomics Research in Computational Molecular Biology (RECOMB-CG 2010), Journal of Computational Biology, vol. 18(9) pp.1-3

Thioulouse J (2011)
SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS, The Annals of Applied Statistics, vol. 5 pp.2300-2325

Tod M, Goutelle S, Clavel-Grabit F, Nicolas G, Charpiat B (2011)
Quantitative prediction of cytochrome P450(CYP) 2D6-Mediated drug interactions, Clinical Pharmacokinetics, vol. 50(8) pp.519-530

Trigui H, Masmoudi S, Brochier-Armanet C, Barani A, Grégori G, Denis M, Dukan S, Maalej S (2011)
Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis., Extremophiles, vol. 15(3) pp.347-58

Trigui H, Masmoudi S, Brochier-Armanet C, Maalej S, Dukan S (2011)
Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia, Int J Microbiol, vol. pp.347-58

Trigui H, Masmoudi S, Brochier-Armanet C, Maalej S, Dukan S (2011)
Survival of extremely and moderately halophilic isolates of Tunisian solar salterns after UV-B or oxidative stress, Can J Microbiol, vol. 57(11) pp.923-33

Trombert Paviot B, Gomez F, Olive F, Polazzi S, Remontet L, Bossard N, Mitton N, Colonna M, Schott AM (2011)
Identifying Prevalent Cases of Breast Cancer in the French Case-mix Databases, Methods of Information in Medicine, vol. 50 pp.124-130

Uhry Z, Remontet L, Grosclaude P, Velten M, Mitton N, Kudjawu Y, Colonna M (2011)
Intérêt des données hospitalières 2002-2008 pour la surveillance de l’incidence du cancer de la thyroïde en France, Institut de veille sanitaire, vol. pp.1-28

Valeix M (2011)
Temporal dynamics of dry-season water-hole use by large African herbivores in two years of contrasting rainfall in Hwange National Park Zimbabwe, Journal of Tropical Ecology, vol. 27 pp.163-170

Valeix M, Chamaillé-Jammes S, Loveridge A J, Davidson Z, Hunt J E, Madzikanda H, Macdonald D W (2011)
Understanding Patch Departure Rules for Large Carnivores : Lion Movements Support a Patch-Disturbance Hypothesis, THE AMERICAN NATURALIST, vol. 178 pp.269-275

Valeix M, Fritz H, Sabatier R, Murindagomo F, Cumming D, Duncan P (2011)
Elephant-induced structural changes in the vegetation and habitat selection by large herbivores in a African savanna, Biological COnservation, vol. 144(2) pp.902-912

Valiente-Moro C, Thioulouse J, Chauve C, Zenner L (2011)
Diversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae, Journal of Medical Entomology, vol. 48 pp.788-796

Van de Wiel MA, Picard F, Van Wieringen WN, Ylstra B (2011)
Preprocessing and downstream analysis of microarray DNA copy number profiles, Briefings in Bioinformatics, vol. 12 pp.10-21

Vanhems P, Bénet T, Voirin N, Januel J-M, Lepape A, Allaouchiche B, Argaud L, Chassard D, Guérin C (2011)
Early-onset ventilator-associated pneumonia incidence in intensive care units: a surveillancebased study, Infectious Diseases, vol. 11 pp.1-6

Vanhems P, Voirin N, Roche S, Escuret V, Regis C, Gorain C, Pieres-Cronenberger S, Giard M, Lina B, Najioullah F, Barret B, Pollissard L, David S, Crozet MN, Comte B, Hirschel B, Ecochard R (2011)
Risk of Influenza-Like Illness in an Acute Health Care Setting During Community Influenza Epidemics in 2004-2005 2005-2006 and 2006-2007, Archive of Internal Medicine, vol. 171(2) pp.151-157

Van Oudenhove L, Billoir E, Boulay R, Bernstein C, Cerda X (2011)
Temperature limits trail following behaviour through pheromone decay in ants, Naturwissenschaften, vol. 98 pp.1009-1017

Vavre F, Mavingui P (2011)
Les bactéries symbiotiques d’arthropodes et de nématodes, médecine/sciences, vol. 27 pp.953-958

Vellozo AF, Véron A, Baa-Puyoulet P, Huerta-Cepas J, Cottret L, Febvay G, Calevro F, Rahbé Y, Douglas AE, Gabaldon T, Sagot M-F, Charles H, Colella S (2011)
CycADS: an annotation database system to ease the development and update of BioCyc databases, Database, vol. 2011 pp.1-11

Venier A-G, Gruson D, Lavigne T, Jarno P, L`Hériteau F, Coignard B, Savey A, Rogues AM (2011)
Identifying new risk factors for Pseudomonas aeruginosa pneumonia in intensive care units: experience of the French national surveillance REA-RAISIN, Journal of Hospital Infection, vol. pp.1-5

Venier A-G, Lavigne T, Jarno P, L` heriteau F, Coignard B, Savey A, Rogues A-M (2011)
Nosocomial urinary tract infection in the intensive care unit: when should Pseudomonas aeruginosa be suspected? Experience of the French national surveillance of nosocomial infections in the intensive care unit Rea-Raisin, Clinical Microbiology and Infection, vol. pp.1-3

Venner S, Pelisson P-F, Bel-Venner MC, Debias F, Rajon E, Menu F (2011)
Coexistence of Insect Species competing for a pulsed resource: toward a unified theory of biodiversity in fluctuating environments, PLoS ONE, vol. 6(3) pp.1-9

Vergnes M, Ginevra C, Kay E, Normand P, Thioulouse J, Jarraud S, Maurin M, Schneider D (2011)
Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris, Journal of Clinical Microbiology, vol. 49(1) pp.315-324

Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage L, Picard F, Guyomarc`h S, Cellier C, Parry G, Koumproglou R, Doonan JH, Estelle M, Godin C, Kepinski S, Bennett M, de Veylder L, Traas J (2011)
The auxin signalling network translates dynamic input into robust pattening at the shoot apex, Molecular Systems Biology, vol. 7(508) pp.1-15

Veron AS, Lemaitre C, Gautier C, Lacroix V, Sagot M-F (2011)
Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny, BMC Genomics, vol. 12(1) pp.1-38

Villard P, Bonenfant C, Bretagnolle V (2011)
Effects of satellite transmitters fitted to breeding Cory`s shearwaters, Journal of Wildlife Management, vol. 75 pp.709-714

Villar E, Lièvre M, Kessler M, Lemaitre V, Alamartine E, Rodier M, François M, Zaoui P, Moranne O, Choukroun G, Guerraoui A, Jolivot A, Janin G, Branger B, Heng AE, Boudray C, Bissery A, Rabilloud M, Pouteil-Noble C (2011)
Anemia normalization in patients with type 2 diabetes and chronic kidney disease: results of the NEPHRODIAB2 randomized trial, Journal of Diabetes and Its complications, vol. pp.1-7

Voirin N, Roche S, Vanhems P, Giard M, David-Tchouda S, Barret B, Ecochard R (2011)
A multiplicative hazard regression model to assess the risk of disease transmission at hospital during community epidemics, BioMed Central, vol. 11(53) pp.1-28

Wallon M, Kieffer F, Binquet C, Thulliez P, Garcia-Méric P, Dureau P, Franck J, Peyron F, Bonnin A, Villena I, Bonithon-Kopp C, Gouyon J-B, Masson S, Félin A, Cornu C (2011)
Toxoplasmose congénitale : comparaison randomisée de stratégies de prévention des rétinochoroïdites, Thérapie, vol. 66 pp.473-480

Westerhout CM, Bonnefoy E, Welsh RC, Steg P-G, Boutitie F, Armstrong PW (2011)
The influence of time from symptom onset and reperfusion strategy on 1-year survival in ST-elevation myocardial infarction: A pooled analysis of an early fibrinolytic strategy versus primary percutaneous coronary intervention from CAPTIM and WEST, American Heart Journal, vol. 161(2) pp.283-290

Zampicinini G, Cervella P, Biémont C, Sella G (2011)
Insertional variability of four transposable elements and population structure of the midge Chironomus riparius (Diptera), Mol Genet Genomics, vol. pp.293-305

Zegbeh H, Bleyzac N, Berhoune C, Bertrand Y (2011)
Vancomycine : quelles doses pour une meilleure efficacité en hémato-oncologie pédiatrique ?, Archives de Pédiatrie, vol. 18 pp.843-934

inproceedings :

Bourqui R, Auber D, Lacroix V, Jourdan F (2011)
Metabolic network visualization using constraint planar graph drawing algorithm, 10th conf. on Information Visualization, IEEE Computer Society pp.489-496

Gavranovic H, Tannier E (2011)
Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces Cerevisiae, Pacific Symposium on Biocomputing, , vol. 15 pp.21-30

206 articles

article :

Abby S, Tannier E, Gouy M, Daubin V (2010)
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests, BMC Bioinformatics, vol. 11(324) pp.1-13

Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J (2010)
Palaeogenomics of plants: syntenybased modelling of extinct ancestors, Trends in Plant Science, vol. 15(9) pp.479-487

Adakal H, Gavotte L, Starchurski F, Konkobo M, Henri H, Zoungrana S, Huber K, Vachiery N, Martinez D, Morand S, Frutos R (2010)
Clonal origin of emerging populations of Ehrlichia ruminantium in Burkina Faso, Infection Genetics and Evolution, vol. 10 pp.903-912

Adi SS, Braga M, Fernandes CG, Ferreira CE, Martinez FV, Sagot M-F, Stefanes MA, Tjandraatmadja C, Wakabayashi Y (2010)
Repetition-free longest common subsequence, Discrete Applied Mathematics, vol. 158(12) pp.1315-1324

Afonso E, Thuilliez C, Gilot-Fromont E (2010)
Local meteorological conditions dynamics of seroconversion to Toxoplasma gondii in cats Felis catus and oocyst burden in a rural environment, Epidemiology and Infection, vol. 138 pp.1105-1113

Antoniou A, Wang X, Fredericksen Z, McGuffog L, Tarrell R, Sinilnikova O, Healey S, Morrison J, Kartsonaki C, Lesnick T, Ghoussanini M, Barrowdale D, Embrace, Peock S, Cook M, Oliver C, Frost D, Eccles D, Evans G, Eeles R, Izatt L, Chu C, Douglas F, Paterson J, Stoppa-Lyonnet D, Houdayer C, Mazoyer S, Giraud S, Lasset C (2010)
A locus on 19p13 modifies risk of breast cancer in BRCA1 mutation carriers and is associated with hormone receptor-negative breast cancer in the general population, Nature Genetics, vol. 42(10) pp.885-895

Arigon A-M, Perriere G, Gouy M (2010)
Proposals for classification methods dedicated to biological data, International Journal of Biomedical Engineering and Technology, vol. 3(1) pp.4-21

Arnaiz O, Gout J-F, Betermier M, Bouhouche K, Cohen J, Duret L, Kapusta A, Meyer E, Sperling L (2010)
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia, BMC Genomics, vol. 11(547) pp.1-13

Arsène-Ploetze F, Koechler S, Marchal M, Coppée J-Y, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan C G, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin P N (2010)
Structure function and evolution of the Thiomonas spp. genome, PLoS GENETICS, vol. 6 pp.107-114

Aubert D, Ajzenbert D, Richomme C, Gilot-Fromont E, Terrier ME, de Gevigney C, Game Y, Maillard D, Gibert P, Dardé ML, Villena I (2010)
Molecular an biological characteristics of Toxoplasma gondii isolates from wildlife in France, Veterinary Parasitology, vol. 171 pp.346-349

Augot D, Sauvage F, Jouet D, Simphal E, Veuille M, Couloux A, Kaltenbach ML, Depaquit J (2010)
Discrimination of Culicoides obsoletus and Culicoides scoticus potential bluetongue vectors by morphometrical and mitochondrial cytochrome oxidase subunit I analysis, Infection Genetics and Evolution, vol. 10(5) pp.629-637

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R (2010)
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach, BMC Bioinformatics, vol. 11(355) pp.1-12

Baldazzi V, Ropers D, Markowicz Y, Kahn D, Geiselmann J, de Jong H (2010)
The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes, PLos Computational Biology, vol. 6(6) pp.1-12

Banneau G, Guedj M, MacGrogan G, de Mascarel I, Velasco V, Schiappa R, Bonadona V, David A, Dugast C, Gilbert-Dussardier B, Ingster O, Vabres P, Caux F, de Reynies A, Iggo R, Sevenet N, Bonnet F, Longy M (2010)
Molecular apocrine differentiation is a common feature of breast cancer in patients with germline PTEN mutations, Breast Cancer Research, vol. 12 pp.1-13

Barbazan P, Guiserix M, Boonyuan W, Tuntaprasart W, Pontier D, Gonzalez J-P (2010)
Modelling the effect of temperature on transmission of dengue, Medical and Veterinary Entomology, vol. 24 pp.66-73

Baudet C, Lemaitre C, Dias Z, Gautier C, Tannier E, Sagot M-F (2010)
Cassis: detection of genomic rearrangement breakpoints, Bioinformatics, vol. 26(15) pp.1897-1898

Beisson J, Bétermier M, Bré M-H, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer Jr JR, Sperling L (2010)
Paramecium tetraurelia: The Renaissance of an Early Unicellular Model, Emerging Model Organisms, vol. 2010(1) pp.1-55

Bejan-Angoulvant T, Saadatian-Elahi M, Wright JM, Schron EB, Lindholm LH, Fagard R, Staessen JA, Gueyffier F (2010)
Treatment of hypertension in patients 80 years and older: the lower the better? A meta-analysis of randomized controlled trials, Journal of Hypertension, vol. 28 pp.1366-1372

Belch JJF, Dormandy J, Caspar (2010)
Results of the randomized placebo-controlled clopidogrel and acetylsalicylic acid in bypass surgery for peripheral arterial disease (CASPAR) trial, Journal of vascular surgery, vol. 52(4) pp.825-833

Belot A, Abrahamowicz M, Remontet L, Giorgi R (2010)
Flexible modeling of competing risks in survival analysis, Statistics in Medicine, vol. 29 pp.2453-2468

Bernet C, Giard M, Laprugne-Garcia E, Fabry J (2010)
Retour d`expérience: une endophtalmie à Staphylococcus epidermidis post-injection intravitréenne d`Avastin, Revue d`Ophtalmologie Française, vol. 173 pp.1-4

Berthe A, Duclos A, Ray-Coquard I, Colin C, Bleyzac N (2010)
Evaluation de l`adhésion au référentiel Afssaps sur les antifongiques en hémato-oncologie pédiatrique, Médecine et maladies infectieuses, vol. 3075 pp.1-8

Biémont C (2010)
From genotype to phenotype. What do epigenetics and epigenomics tell us?, Heredity, vol. 105 pp.1-3

Biémont C (2010)
Inbreeding effects in the epigenetic era, Nature Reviews Genetics, vol. 11(3) pp.1-3

Biémont C (2010)
A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution, Genetics, vol. 186(4) pp.1085-1093

Billoir E, Denis J-B, Commeau N, Cornu M, Zuliani V (2010)
Probabilistic Modeling of the Fate of Listeria Monocytogenes in Diced Bacon During the Manufacturing Process, Risk Analysis, vol. 31(2) pp.237-254

Blanchard P, Devillard S (2010)
On the evolutionary consequences of a Trivers-Willard effect in humans: Further analysis of Dr S. Kanazawa’s paper on ‘beautiful parents`, Journal of Theoretical Biology, vol. 264 pp.1296-1298

Bonaïti B, Bonadona V, Perdry H, Andrieu N, Bonaïti-Pellié C (2010)
Estimating penetrance from multiple case families with predisposing mutations: extension of the `genotype-restricted likelihood` (GRL) method, European Journal of Human Genetics, vol. 19 pp.173-179

Bonnefoy M, Laville M, Ecochard R, Jusot JF, Normand S, Maillot S, Lebreton B, Jauffret M (2010)
Effects of branched amino acids supplementation in malnourished elderly with catabolic status, The Journal of Nutrition Health & Aging, vol. 14(7) pp.579-584

Bonnin M, Laurent JR, Parratte S, Zadegan F, Badet R, Bissery A (2010)
Can patients really do sport after TKA?, Knee Surgery Sports Traumatol Arthroscopy, vol. 18 pp.853-862

Boulay R, Galarza JA, Chéron B, Hefetz A, Lenoir A, Van Oudenhove L, Cerda X (2010)
Intraspecific competition affects population size and resource allocation in an ant dispersing by colony fission, Ecolory, vol. 91(11) pp.3312-3321

Bouvier A-M, Sant M, Verdecchia A, Forman D, Damhuis R, Coebergh JW, Crocetti E, Crosignani P, Gafa L, Launoy G, Martinez-Garcia C, Plesko I, Pompe-Kirn V, Rachtan J, Velten M, Vercelli M, Zwierko M, Esteve J, Faivre J (2010)
What reasons lie behind long-term survival differences for gastric cancer within Europe?, European Journal of Cancer, vol. 46 pp.1086-1092

Bouysset M, Coury F, Bonnin M, Vianey JC, Duivon JP, Sprunck N, Nemoz C, Damiano J, Tebib J (2010)
Is cavus foot affected by midfoot flattening in rheumatoid arthritis?, Médecine et chirurgie du pied, vol. 26 pp.75-80

Brilli M, Fondi M, Fani R, Mengoni A, Ferri L, Bazzicalupo M, Biondi E (2010)
The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis, BMC Systems Biology, vol. 4(52) pp.1-46

Brinza L, Calevro F, Duport G, Gaget K, Gautier C, Charles H (2010)
Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS, BMC Genomics, vol. 11(666) pp.1-16

Brochet AL, Gauthier-Clerc M, Guillemain M, Fritz H, Waterkeyn A, Baltanas A, Green AJ (2010)
Field evidence of dispersal of branchiopods ostracods and bryozoans by teal textit(Anas crecca) in the Camargue (southern France), Hydrobiologia, vol. 637(1) pp.255-261

Brochet AL, Guillemain M, Gauthier-Clerc M, Fritz H, Green AJ (2010)
Endozoochory of Mediterranean aquatic plant seeds by teal after a period of desiccation: Determinants of seed survival and influence of retention time on germinability and viability, Aquatic Botany, vol. 93 pp.99-106

Buiret G, Combe C, Favrel V, Pommier P, Martin L, Ecochard R, Fayette J, Tartas S, Ramade A, Céruse P (2010)
A retrospective multicenter study of the tolerance of induction chemotherapy with docetaxel cisplatin and 5-fluorouracil followed by radiotherapy with concomitant cetuximab in 46 cases of squamous celle carcinoma of the head and neck., International Journal of Radiation Oncology Biology Physics, vol. 77(2) pp.430-437

Burgmann H, Hiesmayr JM, Savey A, Bauer C, Metnitz B, Metnitz PGH (2010)
Impact of nosocomial infections on clinical outcome and resource consumption in critically ill patients, Intensive care medicine, vol. 36(9) pp.1597-1601

Callait-Cardinal M-P, Gilot-Fromont E, Chossat L, Gonthier A, Chauve C, Zenner L (2010)
Flock management and histomonosis in free-range turkeys in France: description and search for potential risk factors, Epidemiology and Infection, vol. 10 pp.1-11

Cegan R, Marais GAB, Kubekova H, Blavet N, Widmer A, Vyskot B, Dolezel J, Safar J, Hobza R (2010)
Structure and evolution of Apetala3 a sex-linked gene in Silene latifolia, BMC Plant Biology, vol. 10(180) pp.1-10

Chaillol I, Ecochard R, Denis MA, Iwaz J, Khoueiry P, Bergeret A (2010)
Fast and specific detection of moderate long-term changes in occupational blood exposures, Occupational and Environmental Medicine, vol. 67(11) pp.785-791

Chapey E, Wallon M, Debize G, Rabilloud M, Peyron F (2010)
Diagnosis of congenital toxoplasmosis 1 using whole-blood 2 interferon-γ release assay, Journal of Clinical Microbiology, vol. 48(1) pp.41-45

Chapuisat G, Dronne MA, Grenier E, Hommel M, Boissel J-P (2010)
In Silico Study of the Influence of Intensity and Duration of Blood Flow Reduction on Cell Death Through Necrosis or Apoptosis During Acute Ischemic Stroke, Acta Biotheor, vol. 58 pp.171-190

Charvat H, Ayzac L, Girard R, Gardes S, Ecochard R (2010)
Detecting related cases of bloodstream infections using time-interval distribution modelling, Journal of Hospital Infection, vol. 74(3) pp.250-257

Chauve C, Gavranovic H, Ouangraoua A, Tannier E (2010)
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II, Journal of Computational Biology, vol. 17(9) pp.1097-1112

Chenuil A, Hoareau TB, Egea E, Penant G, Rocher C, Aurelle D, Mokhtar-Jamai K, Bishop JDD, Boissin E, Diaz A, Krakau M, Luttikhuizen PC, Patti F P, Blavet N, Mousset S (2010)
An efficient method to find potentially universal population genetic markers applied to metazoans, BMC Evolutionary Biology, vol. 10(276) pp.1-17

Chun-Long C, Rappailles A, Duquenne L, Huvet M, Guilbaud G, Farinelli L, Audit B, d`Aubenton-Carafa Y, Arneodo A, Hyrien O, Thermes C (2010)
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes, Genome Research, vol. 20(4) pp.447-457

Colonna M, Bossard N, Guizard A-V, Remontet L, Grosclaude P, Francim (2010)
Descriptive epidemiology of thyroid cancer in France: Incidence mortality and survival, Annals of Endocrinology, vol. 71(2) pp.95-101

Colonna M, Bossard N, Remontet L, Grosclaude P, FRANCIM (2010)
Changes in the risk of death from cancer up to five years after diagnosis in elderly patients: a study of five common cancers, International Journal of Cancer, vol. 127(4) pp. 924-931

Cornu C, Joseph P, Gaillard S, Bauer C, Vedrinne C, Bissery A, Melot G, Bossard N, Belon P, Lehot J-J (2010)
No effect of a homoeopathic combination of Arnica montana and Bryonia alba on bleeding inflammation and ischaemia after aortic valve surgery, British Journal of Clinical Pharmacology, vol. 69(2) pp.136-142

Cornu C, Remontet L, Noel-Baron F, Nicolas A, Feugier-Favier N, Roy P, Claustrat B, Saadatian-Elahi M, Kassaï B (2010)
A dietary supplement to improve the quality of sleep: a randomized placebo controlled trial, BMC Complementary and alternative medicine, vol. 10(29) pp.1-32

Cotte L, Bénet T, BIllioud C, Miailhes P, Scoazec J-Y, Ferry T, Brochier C, Boibieux A, Vanhems P, Chevallier M, Zoulim F (2010)
The role of nucleoside and nucleotide analogues in nodular regenerative hyperplasia in HIV-infected patients: A case control study, Journal of Hepatology, vol. 54 pp.1-8

Cottret L, Milreu P-V, Acuña V, Marchetti-Spaccamela A, Stougie L, Charles H, Sagot M-F (2010)
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts Baumannia cicadellinicola and Sulcia muelleri with Their Insect Host Homalodisca coagulata, PLos Computational Biology, vol. 6(9) pp.307-316

Cottret L, Wildridge D, Vinson F, Barrett MP, Charles H, Sagot M-F, Jourdan F (2010)
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks, Nucleic Acids Research, vol. 38 pp.132-137

Coudeville L, Bailleux F, Riche B, Megas F, Andre P, Ecochard R (2010)
Relationship between haemagglutinationinhibiting antibody titres and clinical protection against influenza: development and application of a bayesian random-effects model, BMC Medical Research Methodology, vol. 10(18) pp.1-11

Cubaynes S, Pradel R, Choquet R, Duchamp C, Gaillard J-M, Lebreton J-D, Marboutin E, Miquel C, Reboulet A-M, Poillot C, Taberlet P, Gimenez O (2010)
Importance of Accounting for Detection Heterogeneity When Estimating Abundance: the Case of French Wolves, Conservation Biology, vol. 24(2) pp.621-626

De Beaudrap P, Etard JF, Diouf A, Ndiaye I, Ndèye Fatou NG, Sow PPS, Ndèye KC, Ecochard R, Delaporte E (2010)
Incidence and determinants of new AIDS-defining illnesses after HAART initiation in a Senegalese cohort, BMC Infectious Diseases, vol. 10(179) pp.1-9

Decousus H, Prandoni P, Mismetti P, Bauersachs RM, Boda Z, Brenner B, Laporte S, Matyas L, Middeldorp S, Sokurenko G, Leizorovicz A (2010)
Fondaparinux for the Treatment of superficial-vein thrombosis in the legs, The new england journal o f medicine, vol. 363(13) pp.1222-1232

de Crécy-Lagard V, Brochier-Armanet C, Urbonavicius J, Fernandez B, Philipps G, Lyons B, Noma A, Alvarez S, Droogmans L, Armengaud J, Grosjean H (2010)
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea, Mol Biol Evol, vol. 27 pp.2062-77

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Conception et évaluation de la qualité d`une information écrite sur le scanner et l`imagerie par résonnace magnétique en neuropédiatrie, Annales Françaises d`Anesthésie et Réanimation, vol. 29 pp.704-709

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Putting phylogeny into the analysis of biological traits:A methodological approach, Journal of Theoretical Biology, vol. 264 pp.693-701

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Could different environmental conditions select for different flight characteristics in sexual and asexual parasitoid Venturia canescens?, Entomologia Experimentalis et Applicata, vol. 136 pp.80-88

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High red deer density depresses body mass of roe deer fawns, Oecologia, vol. 163 pp.91-97

Richomme C, Afonso E, Tolon V, Ducrot C, Halos L, Alliot A, Perret C, Thomas M, Boireau P, Gilot-Fromont E (2010)
Seroprevalence and factors associated with Toxoplasma gondii infection in wild boar Sus scrofa in a Mediterranean island, Epidemiology and Infection, vol. 138 pp.1257-1266

Richomme C, Lacour SA, Ducrot C, Gilot-Fromont E, Casabianca F, Maestrini O, Vallée I, Grasset A, van der Giessen J, Boireau P (2010)
Epidemiological survey of trichinellosis in wild boar Sus scrofa and fox Vulpes vulpes in a French insular region Corsica, Veterinary Parasitology, vol. 172 pp.150-154

Rouvière O, Girouin N, Glas L, Ben Cheikh A, Gelet A, Mège-Lechevallier F, Rabilloud M, Chapelon JY, Lyonnet D (2010)
Prostate cancer transrectal HIFU ablation: detection of local recurrences using T2-weighted and dynamic contrast-enhanced MRI, European radiology, vol. 20 pp.48-55

Saadatian-Elahi M, Facy F, Del Signore C, Vanhems P (2010)
Perception of epidemic`s related anxiety in the General French Population: a cross-sectinal study in the Rhône-Alpes region, BMC Public Health, vol. 10(191) pp.302-304

Sahajian F, Bailly F, Vanhems P, Fabry J, Trepo D (2010)
A randomized trial of viral hepatitis prevention among underprivileged people in the Lyon area of France, Journal of Public Health, vol. pp.1-11

Salacha R, Kovacic F, Brochier-Armanet C, Wilhelm S, Tommassen J, Filloux A, Voulhoux R, Bleves S (2010)
The Pseudomonas aeruginosa patatin-like protein PlpD is the archetype of a novel Type V secretion system, Environ Microbiol, vol. 12 pp.1498-512

Salin K, Teulier L, Rey B, Rouanet J-L, Voituron Y, Duchamp C, Roussel D (2010)
Tissue variation of mitochondrial oxidative phosphorylation efficiency in cold-acclimated ducklings, Acta ABP, vol. 57(4) pp.409-412

Secondi J, Johanet A, Pays O, Cazimajou F, Djalout Z, Lemaire C (2010)
Olfactory and visual species recognition in newts and their role in hybridization, Behaviour, vol. 147 pp.1693-1712

Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E, Streit W, Stahl D A, Wagner M, Schleper C (2010)
Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota, Trends Microbiol, vol. 18(8) pp.331-40

Stagnara J, Racle B, Vermont J, Kassaï B, Jacquel J, Duquesne A, Bourrillon A (2010)
Information et éducation des familles des enfants en situation d’urgence: objectifs des messages de santé, Archives de Pédiatrie, vol. 17 pp.850-851

Stagnara J, Racle B, Vermont J, Kassaï B, Jacquel J, Duquesne A, Bourrillon A (2010)
Information et éducation des familles des enfants en situation d’urgence: diffusion téléphonique des messages, Archives de Pédiatrie, vol. 17 pp.854-855

Stagnara J, Racle B, Vermont J, Kassaï B, Jacquel J, Duquesne A, Bourrillon A (2010)
Information et éducation des familles des enfants en situation d’urgence: méthodes d’élaboration des messages, Archives de Pédiatrie, vol. 17 pp.852-853

Stagnara J, Racle B, Vermont J, Kassaï B, Jacquel J, Duquesne A, Bourrillon A (2010)
Information et éducation des familles des enfants en situation d`urgence: suivi d`intervention, Archives de Pédiatrie, vol. 17 pp.856-857

Stagnara J, Vermont J, Jacquel J, Bagou G, Masson S, Kassaï B, Chatelain P (2010)
Réduction des consultations non programmées et non justifiées dans le cadre des urgences pédiatriques grâce à une plateforme téléphonique, La presse médicale, vol. 39(11) pp.e258-e263

Stouthamer R, Russel JE, Vavre F, Nunney L (2010)
Intragenomic conflict in populations infected by Parthenogenesis Inducing Wolbachia ends with irreversible loss of sexual reproduction, BMC Evolutionary Biology, vol. 10(229) pp.1-12

Subtil F, Rabilloud M (2010)
A Bayesian method to estimate the optimal threshold of a longitudinal biomarker, Biometrical Journal, vol. 52(3) pp.333-347

Subtil F, Rabilloud M (2010)
Robust non-linear mixed modelling of longitudinal PSA levels after prostate cancer treatment, Statistics in Medicine, vol. 29 pp.573-587

Tannier E (2010)
Le génome aux ordres des mathématiciens, La Recherche, vol. 439 pp.54-56

Tavares R, Cagnon M, Negrutiu L, Mouchiroud D (2010)
Testing the recent theories for the origin of the hermaphrodite flower by comparison of the transcriptomes of gymnosperms and angiosperms, BMC Evolutionary Biology, vol. 10(240) pp.1-7

Teulier L, Rouanet J-L, Letexier D, Romestaing C, Belouze M, Rey B, Duchamp C, Roussel D (2010)
Cold-acclimation-induced non-shivering thermogenesis in birds is associated with upregulation of avian UCP but not with innate uncoupling or altered ATP efficiency, The Journal of Experimental Biology, vol. 213 pp.2476-2482

Thaunat O, Patey N, Caligiuri G, Gautreau C, Mamani-Matsuda M, Mekki Y, Dieu-Nosjean MC, Eberl G, Ecochard R, Michel JB, Graff-Dubois S, Nicoletti A (2010)
Chronic Rejection Triggers the Devolopment of an aggressive intragraft immune response through recapitulation of Lymphoïd Organogenesis, The Journal of Immunology, vol. 185(1) pp.717-728

Thioulouse J, Valiente Moro C, Zenner L (2010)
Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data, The R Journal, vol. 2(1) pp.44-52

Tortosa P, Charlat S, Labbé P, Dehecq J-S, Barré H, Weill M (2010)
Wolbachia Age-Sex-Specific Density in Aedes albopictus : A Host Evolutionary Response to Cytoplasmic Incompatibility?, PLoS ONE, vol. pp.1-6

Tournoud M, Etard JF, Ecochard R, DeGruttola V (2010)
Adherence to antiretroviral therapy virological response and time to resistance in the Dakar cohort, Statistics in Medicine, vol. 29(1) pp.14-32

Vaillant C, Palmeira L, Chevereau G, Audit B, D`Aubenton-Carafa Y, Thermes C, Arneodo A (2010)
A novel strategy of transcription regulation by intra-genic nucleosome ordering, Genome Research, vol. 20 pp.59-67

Valeix M, Loveridge AJ, Davidson Z, Madzikanda H, Fritz H, Macdonald DW (2010)
How key habitat features influence large terrestrial carnivore movements: waterholes and African lions in a semi-arid savanna of north-western Zimbabwe, Landscape Ecology, vol. 25(3) pp.337-351

Vandenberghe N, Leveque N, Corcia P, Brunaud-Danel V, Salort-Campana E, Besson G, Tranchant C, Clavelou P, Beaulieux F, Ecochard R, Vial C, Broussolle E, Lina B (2010)
Cerebrospinal fluid detection of enterovirus genome in ALS: A study of 242 patients and 354 controls, Amyotrophic Lateral Sclerosis, vol. 11 pp.277-282

Vanpé C, Gaillard JM, Kjellander P, Liberg O, Delorme D, Hewison AJM (2010)
Assessing the intensity of sexual selection on male body mass and antler length in roe deer Capreolus capreolus: is bigger better in a weakly dimorphic species?, Oikos, vol. 119 pp.1484-1492

Venner S, Bernstein C, Dray S, Bel-Venner MC (2010)
Make Love Not War: When Should Less Competitive Males Choose Low-Quality but Defendable Females?, The American Naturalist, vol. 175(6) pp.650-661

Veyrunes F, Catalan J, Tatard C, Cellier-Holzem E, Watson J, Chevret P, Robinson TJ, Britton-Davidian J (2010)
Mitochondrial and chromosomal insights into karyotypic evolution of the pygmy mouse Mus minutoides in South Africa, Chromosome Research, vol. 18 pp.563-574

Veyrunes F, Chevret P, Catalan J, Castiglia R, Watson J, Dobigny G, Robinson TJ, Britton-Davidian J (2010)
A novel sex determination system in a close relative of the house mouse, Proceeding of the Royal Society B-Biological Sciences, vol. 277(1684) pp.1049-1056

Vignon E, Brandt KD, Mercier C, Hochberg M, Hunter D, Mazzuca S, Powell K, Wyman B, Hellio le Graverand MP (2010)
Alignment of the medial tibial plateau affects the rate of joint space narrowing in the osteoarthritic knee, Osteoarthritis and Cartilage, vol. 18(11) pp.1436-1440

Vuillerot C, Girardot F, Payan C, Fermanian J, Iwaz J, de lattre C, Berard C (2010)
Monitoring changes and predicting loss of ambulation in Duchenne muscular dystrophy with the Motor Function Measure, Developmental Medicine and Child Neurology, vol. 52(1) pp.60-65

Vuillerot C, Hodgkinson I, Bissery A, Schott AM, Iwaz J, Ecochard R, D`Anjou MC, Commare MC, Berard C (2010)
Self-Perception of Quality of Life by Adolescents with Neuromuscular Diseases, Journal of Adolescent Health, vol. 46(1) pp.70-76

Walker C B, la Torre J R, Klotz M G, Urakawa H, Pinel N, Arp D J, Brochier-Armanet C, Chain P S, Chan P P, Gollabgir A, Hemp J, Hügler M, Karr E A, Könneke M, Shin M (2010)
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea, Proc Natl acad, vol. 107 pp.8818-23

Walsh T, Goutelle S, Jelliffe R-W, Golden JA, Little EA, DeVoe C, Mickiene D, Hayes M, Conte JE (2010)
Intrapulmonary Pharmacokinetics and Pharmacodynamics of Micafungin in Adult Lung Transplant Patients, Antimicrobial agents and chemotherapy, vol. 54(8) pp.3451-3459

Weladji RB, Holand O, Gaillard J-M, Yoccoz N G, Mysterud A, Nieminen M, Stenseth NC (2010)
Age-specific changes in different components of reproductive output in female reindeer : terminal allocation or senescence?, Oecologia, vol. 162 pp.261-271

Zamora A, Cetre JC, Perol D, Vanhems P (2010)
Collecting health expectations and indicators for teaching staff via the Internet: an original approach of the Observatory for Health Personnel at the University of Lyon, Santé Publique, vol. 22(1) pp.37-49

Zanghi H, Picard F, Miele V, Ambroise C (2010)
Strategies for online inference of model-based clustering in large and growing networks, The annals of Applied Statistics, vol. 4(2) pp.687-714

Zhang YE, Vibranovski MD, Landback P, Marais GAB, Long M (2010)
Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome, PLoS Biology, vol. 8(10) pp.1-13

inproceedings :

Adi SS, Braga MDV, Fernandes CG, Ferreira CE, Martinez FV, Sagot M-F, Stefanes MA, Tjandraatmadja C, Wakabayashi Y (2010)
Repetition-free longest common subsequence, IV Latin-American Algorithms Graphs and Optimization Symposium, Electronic Notes in Discrete Mathematics, vol. 30 pp.243-248

Cottret L, Milreu P-V, Acuña V, Marchetti-Spaccamela A, Viduani-Martinez F, Sagot M-F, Stougie L (2010)
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network, WABI 2008, Springer-Verlag, Lecture Notes in Bioinformatics, vol. LNBI 5251 pp.233-244

Deniélou Y-P, Boyer F, Viari A, Sagot M-F (2010)
Multiple Alignment of Biological Networks: A Flexible Approach, 20th Annual Symposium on Combinatorial Pattern Matching, , vol. 5577 pp.263-273

241 articles

article :

Acuña V, Marchetti-Spaccamela A, Sagot M-F, Stougie L (2009)
A Note on the Complexity of Finding and Enumerating Elementary Modes, BioSystems, vol. 99 pp.210-214

Aho Glélé LS, Fournel I, Tiv M, Astruc K, Cetre J-C (2009)
Emissions de micro-organismes dans les établissements de santé, Salles Propres, vol. 61 pp.21-26

Allemand R, Velle L (2009)
Les Trichobyrrhulus Ganglbauer de France : deux espèces méconnues et énigmatiques (Coleoptera Byrrhidae), L`Entomologiste, vol. 65(4) pp.167-170

Amat I, Desouhant E, Bernstein C (2009)
Differential use of conspecific-derived information by sexual and asexual parasitic wasps exploiting partially depleted host patches, Behavioral ecology and sociobiology, vol. 63 pp.563-572

Astagneau P, L’Hériteau F, Daniel F, Parneix P, Venier A-G, Malavaud S, Jarno P, Lejeune B, Savey A, Metzger M-H, Bernet C, Fabry J, Rabaud C, Tronel H, Thiolet J-M, Coignard B (2009)
Reducing surgical site infection incidence through a network: results from the French ISO-RAISIN surveillance system, Journal of hospital infection, vol. 72 pp.127-134

Babik W, Butlin RK, Baker W, Papadopulos AST, Boulesteix M, Anstett MC, Lexer C, Hutton I, Savolainen V (2009)
How sympatric is speciation in the Howea palms of Lord Howe Island ?, Molecular Ecology, vol. 18 pp.3629-3638

Bacchetta J, Harambat J, Dubourg L, Guy B, Liutkus A, Canterino I, Kassaï B, Putet G, Cochat P (2009)
Both extrauterine and intrauterine growth restriction impair renal function in children born very preterm, Kidney International, vol. 76(4) pp.445-452

Baillif S, Ecochard R, Hartmann D, Frenay M, Kodjikian L (2009)
Implant intraoculaire et chirurgie de la cataracte: comparaison de l’adhésion bactérienne et du risque d’endophtalmie selon le biomatériau, Jounal français d`ophtalmologie, vol. 32 pp.515-528

Bailly-Bechet M, Bradde S, Braunstein A, Flaxman A, Foini L, Zecchina R (2009)
Clustering with shallow trees, Journal of Statistical Mechanics: Theory and Experiment, vol. pp.1-17

Bajard A, Chabaud S, Pérol D, Boissel J-P, Nony P (2009)
Revisiting the level of evidence in randomized controlled clinical trials: A simulation approach, Contemporary Clinical Trials, vol. 30(5) pp.400-410

Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Paralez RE, Detter C, Pujic P, Bruce D, Lavire C, Challacombe JF, Brettin TS, Berry AM (2009)
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations, Genome Research, vol. 19(6) pp.1033-1043

Barbier S, Ecochard R, Schott A-M, Colin C, Delmas PD, Jaglal SB, Couris CM (2009)
Geographical variations in hip fracture risk for women: strong effects hidden in standardised ratios, Osteoporosis International, vol. 20 pp.371-377

Basille M, Herfindal I, Santin-Janin H, Linnell JDC, Odden J, Andersen R, Hogda KA, Gaillard J-M (2009)
What shapes Eurasian lynx distribution in human dominated landscapes: selecting prey or avoiding people?, Ecography, vol. 32(4) pp.683-691

Bel-Venner MC, Mondy N, Arthaud F, Marandet J, Giron D, Venner S, Menu F (2009)
Ecophysiological attributes of adult overwintering in insects: insights from a field study in the nut weevil Curculio nucum, Physiological Entomology, vol. 34 pp.61-70

Ben Cheikh A, Girouin N, Colombel M, Maréchal J-M, Gelet A, Bissery A, Rabilloud M, Lyonnet D, Rouvière O (2009)
Evaluation of T2-weighted and dynamic contrast-enhanced MRI in localizing prostate cancer before repeat biopsy, European radiology, vol. 19(3) pp.770-778

Benet T, Vanhems P (2009)
Correlation of nosocomial bloodstream infection incidences: an ecological study, Journal of Hospital Infection, vol. 73 pp.217-224

Bérard S, Chateau A, Chauve C, Paul C, Tannier E (2009)
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes, Journal of Computational Biology, vol. 16(10) pp.1287-1309

Berman M, Gaillard J-M, Weimerskirch H (2009)
Contrasted patterns of age-specific reproduction in long-lived seabirds, Proceedings of The Royal Society B-Biological Sciences, vol. 276 (1655) pp.375-382

Bernard S, Loffroy R , Sérusclate A, Boussele L, Bonnefoy E, Thévenong C, Rabilloud M, Revel D, Moulina P, Doueke P (2009)
Increased levels of endothelial microparticles CD144 (VE-Cadherin) positives in type 2 diabetic patients with coronary noncalcified plaques evaluated by multidetector computed tomography (MDCT), Atherosclerosis, vol. 203(2) pp.429-435

Bernasconi G, Antonovics J, Biere A, Charlesworth D, Delph LF, Filatov D, Giraud T, Hood ME, Marais GAB, McCauley D, Pannell JR, Shykoff JA, Vyskot B, Wolfe LM, Widmer A (2009)
Silene as a model system in ecology and evolution, Heredity, vol. pp.583-589

Biémont C (2009)
Are transposable elements simply silenced or are they under house arrest?, Trends in Genetics, vol. 25(8) pp.333-334

Billoir E, da Silva Ferrão-Filho A, Delignette-Muller M-L, Charles S (2009)
DEBtox theory and matrix population models as helpful tools in understanding the interaction between toxic cyanobacteria and zooplankton, Journal of Theoretical Biology, vol. 258 pp.380-388

Billy F, Ribba B, Saut O, Morre-Trouilhet H, Colin T, Bresch D, Boissel J-P, Grenier E, Flandrois J-P (2009)
A pharmacologically based multiscale mathematical model of angiogenesis and its use in investigating the efficacy of a new cancer treatment strategy, Journal of Theoretical Biology, vol. 260 pp.545-562

Blumstein D T, Récapet C (2009)
The Sound of Arousal: The Addition of Novel Non-linearities Increases Responsiveness in Marmot Alarm Calls, Ethology, vol. 115 pp.1074-1081

Bonaïti-Pellié C, Andrieu N, Arveux P, Bonadona V, Buecher B, Delpech M, Jolly D, Julian-Reynier J, Luporsi E, Noguès C, Nowak F, Olschwang S, Orsi F, Pujol P, Saurin J-C, Sinilnikova O, Stoppa-Lyonnet D, Thépot F (2009)
Oncogénétique : estimation des besoins de la population en France pour les dix ans à venir, Bulletin du Cancer, vol. 96(9) pp.875-900

Bonenfant C, Gaillard J-M, Coulson T, Festa-Bianchet M, Loison A, Garel M, Egil Loe L, Blanchard P, Pettorelli N, Owen-Smith N, Du Toit J, Duncan P (2009)
Empirical Evidence of Density Dependence in Populations of Large Herbivores, Advances in Ecological research, vol. 41 pp.314-345

Bonenfant C, Pelletier F, Garel M, Bergeron (2009)
Age-dependent horn growth-survival relationship in wild sheep, Journal of Animal Ecology, vol. 78 pp.161-171

Bonnefoy E, Steg P-G, Boutitie F, Dubien P-Y, Lapostolle F, Roncalli J, Dissait F, Vanzetto G, Leizorowicz A, Kirkorian G (2009)
Comparison of primary angioplasty and pre-hospital fibrinolysis in acute myocardial infarction (CAPTIM) trial: a 5-year follow-up, European Heart Journal, vol. 30(13) pp.1598-1606

Bourgeois S, Gilot-Fromont E, Viallefont A, Boussambac F, Deemd SL (2009)
Influence of artificial lights logs and erosion on leatherback sea turtle hatchling orientation at Pongara National Park Gabon, Biological Conservation, vol. 142 pp.85-93

Bourgoin G, Garel M, Dubray D, Maillard D, Gaillard J-M (2009)
What determines global positioning system fix success when monitoring free-ranging mouflon?, European Journal of Wildlife Research, vol. 55 pp.603-613

Bourguignon L, Goutelle S, Burdin de Saint Martin J, Guillermet A, Bouniot P, Maire P, Ducher M (2009)
Variabilité pharmacocinétique intra-individuelle et traitement antibiotique prolongé, Médecine et maladies infectieuses, vol. 2859 pp.1-4

Bourguignon L, Goutelle S, Burdin de Saint Martin J, Maire P, Ducher M (2009)
Evaluation of various gentamicin dosage regimens in geriatric patients: a simulation study, Fundamental & Clinical Pharmacology, vol. pp.1-5

Bourguignon L, Goutelle S, Gérard C, Guillermet A, Burdin de Saint Martin J, Maire P, Ducher M (2009)
Pharmacocinétique de l’amikacine chez l’adulte : une hétérogénéité qui remet en cause le calcul de la dose basé sur le poids, Thérapie, vol. 64(1) pp.1-5

Boussau B (2009)
Phylogenetic Relationships Deduced from Whole Genome Comparisons, Encyclopedia of Life Sciences, vol. pp.1-8

Boussau B, Daubin V (2009)
Genomes as documents of evolutionary history, Trends in Ecology and Evolution, vol. 1192 pp.1-9

Boussau B, Guéguen L, Gouy M (2009)
A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies, Evolutionary Bioinformatics, vol. 5 pp.67-79

Bouvier A-M, Remontet L, Hédelin L, Launoy G, Jooste V, Grosclaude P, Belot A, Lacour B, Esteve J, Bossard N, Faivre J, FRANCIM (2009)
Conditional Relative Survival of Cancer Patients and Conditional Probability of Death, Cancer, vol. 115(19) pp.4616-4624

Bouysset M, Coury F, Tavernier T, Bonnin M, Damiano J, Nemoz C, Tebib JG (2009)
Intraarticular injection of adalimumab in localized psoriatic arthritis, Médecine et chirurgie du pied, vol. 25(4) pp.133-135

Braga M (2009)
BaobabLUNA: the solution space of sorting by reversals, Bioinformatics, vol. 25(14) pp.1833-1835

Braga M, Gautier C, Sagot M-F (2009)
An asymmetric approach to preserve common intervals while sorting by reversals, Algorithms for Molecular Biology, vol. 4(16) pp.1833-1835

Braga MDV, Gautier C, Sagot M-F (2009)
An asymmetric approach to preserve common intervals while sorting by reversals, Algorithms for Molecular Biology, vol. 4(16) pp.1833-1835

Branca A, Vavre F, Silvain J-F, Dupas S (2009)
Maintenance of adaptive differentiation by Wolbachia induced bidirectional cytoplasmic incompatibility: the importance of sib-mating and genetic systems, BMC Evolutionary Biology, vol. 9(185) pp.1-13

Brinza L, Vinuelas J, Cottret L, Calevro F, Rahbé Y, Febvay G, Duport G, Colella S, Rabatel A, Gautier C, Fayard J-M, Sagot M-F, Charles H (2009)
Systemic analysis of the symbiotic function of Buchnera aphidicola the primary endosymbiont of the pea aphid Acyrthosiphon pisum, C.R. Biologies, vol. 332(11) pp.1034-1049

Brochet AL, Guillemain M, Fritz H, Gauthier-Clerc M, Green AJ (2009)
The role of migratory ducks in the long-distance dispersal of native plants and the spread of exotic plants in Europe, Ecography, vol. 32 pp.919-928

Brochier-Armanet C, Talla E, Gribaldo S (2009)
The multiple evolutionary histories of dioxygen reductases: implications for the origin and evolution of aerobic respiration, Mol Biol Evol, vol. 26 pp.285-97

Bruzzone OA, Villacide JM, Bernstein C, Corley JC (2009)
Flight variability in the woodwasp Sirex noctilio (Hymenoptera: Siricidae): an analysis of flight data using wavelets, Journal of Experimental Biology, vol. 212 pp.731-737

Calenge C, Dray S, Royer-Carenzi M (2009)
The concept of animals trajectories from a data analysis perspective, Ecological Informatics, vol. 4 pp.34-41

Carlet J, Astagneau P, Brun-Buisson C, Coignard B, Salomon V, Tran B, Desenclos J-C, Jarlier V, Schlemmer B, Parneix P, Regnier B, Fabry J, Abenaïm L, Apert E, Aronica E, Beaucaire G, Bientz P, Brücker G, Chaperon J, Cremieux A-C, Cullet D, Dab W, Drouvot J, Drücker J, Dumartin C, Gachie J-P, Garnier P, Girard J-F, Grandbastien B, Hartemann P, Houssin D, Jarlier V, Labadie J-C, Lejeune B, Leluong T, Lepoutre A, Lequellec-Nathan M, May-Michellangeli L, Menard J, Reveillard O, Savey A (2009)
French National Program for Prevention of Healthcare-Associated Infections and Antimicrobial Resistance 1992–2008: Positive Trends But Perseverance Needed, Infection control and hospital epidemiology, vol. 30(8) pp.1-9

Chamaillé-Jammes S, Fritz H, Madzikanda H (2009)
Piosphere contribution to landscape heterogeneity: a case study of remote-sensed woody cover in a high elephant density landscape, Ecography, vol. 32 pp.871-880

Chamaillé-Jammes S, Valeix M, Bourgarel M, Murindagomo F, Fritz H (2009)
Seasonal density estimates of common large herbivores in Hwange National Park Zimbabwe, African Journal of Ecology, vol. 47(4) pp.804-808

Chamaillé-Jammes S, Valeix M, Bourgarel M, Murindagomo F, Fritz H (2009)
Seasonal density estimates of common large herbivores in Hwange National Park Zimbabwe, African Journal of Ecology, vol. 47(4) pp.804-808

Charlat S, Duplouy A, Hornett EA, Dyson EA, Davies N, Roderick GK, Wedell N, Hurst GDD (2009)
The joint evolutionary histories of Wolbachia and mitochondria in Hypolimnas bolina, BMC Evolutionary Biology, vol. 9(64) pp.1-9

Chevereau G, Palmeira L, Thermes C, Arneodo A, Vaillant C (2009)
Thermodynamics of Intragenic Nucleosome Ordering, Physical review letters, vol. 103(18) pp.188-103

Cho T-H , Nighoghossian N , Tahon F , Némoz C , Hermier M , Salkine F , Derex L , Trouillas P , Froment J-C , Turjman F (2009)
Brain Stem Diffusion-Weighted Imaging Lesion Score: A Potential Marker of Outcome in Acute Basilar Artery Occlusion, AJNR Am J Neuroradiol, vol. 30 pp.194-198

Cluze C, Colonna M, Remontet L, Poncet F, Sellier E, Seigneurin A, Delafosse P, Bossard N (2009)
Analysis of the effect of age on the prognosis of breast cancer, Breast Cancer Research and Treatment, vol. 117(1) pp.121-129

Cohas A, Allainé D (2009)
Social structure influences extra-pair paternity in socially monogamous mammals, Biology letters, vol. pp.42-48

Cohas A, Bonenfant C, Kempenaers B, Allainé D (2009)
Age-specific effect of heterozygosity on survival in alpine marmots Marmota marmota, Molecular Ecology, vol. 18 pp.1491-1503

Combes J-D, Grelier G, Laversanne M, Voirin N, Chabaud S, Ecochard R, Lasset C (2009)
Contribution of cell culture RNA extraction and reverse transcription to the measurement error in quantitative reverse transcription polymerase chain reaction-based gene expression quantification, Analytical Biochemistry, vol. 393(1) pp.29-35

Cornu C, Bissery A, Malbos C, Garwig R, Cocherel C, Ecochard R, Peyron F, Wallon M (2009)
Factors affecting the adherence to an antenatal screening programme : an experience with toxopoplasmosis sreenning in France, Eurosurveillance Bulletin européen des maladies transmissibles, vol. 14(9) pp.21-25

Cottraux J, Druon Note I, Boutitie F, Milliery M, Genouihlac V, Yao SN, Note B, Mollard E, Bonasse F, Gaillard S, Djamoussian D, C de Mey, Culem A, Gueyffier F (2009)
Cognitive Therapy versus Rogerian Supportive Therapy in Borderline Personality Disorder, Psychotherapy and psychosomatics, vol. 78(5) pp.307-316

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Poor horse traders: large mammals trade survival for reproduction during the process of feralization, Proceeding of the Royal Society, vol. 276(1663) pp.1911-1919

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Predicting visual outcome after treatment of pituitary adenomas with optical coherence tomography, American Journal of Ophthalmology, vol. 147(1) pp.64-70

Johanet A, Picard D, Garner TWJ, Dawson DA, Morales-Hojas R, Jehle R, Peltier D, Lemaire C (2009)
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Fondements de l`évaluation des tests diagnostiques, Lecture critique d`article, vol. 59 pp.375-379

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Etudes de cohorte et études pronostiques, La revue du praticien, vol. 59 pp.535-538

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Interactions between Coexisting Intracellular Genomes: Mitochondrial Density and Wolbachia Infection, Applied and Environmental Microbiology, vol. 75(7) pp.1916-1921

Mouton L, Traunecker E, McElroy K, Du Pasquier L, Ebert D (2009)
Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa, Research in Microbiology, vol. 160 pp.792-799

Murat F-J, Poissonnier L, Rabilloud M, Belot A, Bouvier R, Rouviere O, Chapelon J-Y, Gelet A (2009)
Mid-term Results Demonstrate Salvage High-Intensity Focused Ultrasound (HIFU) as an Effective and Acceptably Morbid Salvage Treatment Option for Locally Radiorecurrent Prostate Cancer, European Urology, vol. 55(3) pp.640-659

Necşulea A, Guillet C, Cadoret J-C, Prioleau M-N, Duret L (2009)
The Relationship between DNA Replication and Human Genome Organization, Molecular Biology and Evolution, vol. 26(4) pp.729-741

Necşulea A, Sémon M, Duret L, Hurst LD (2009)
Monoallelic expression and tissue specificity are associated with high crossover rates, Trends in Genetics, vol. 25(12) pp.519-522

Nilsen EB, Gaillard J-M, Anderson R, Odden J, Delorme D, Van Laere G, Linnell JDC (2009)
A slow life in hell or a fast life in heaven: demographic analyses of contrasting roe deer populations, Journal of Animal Ecology, vol. 78(3) pp.585-594

Oberto J, Breuil N, Hecker A, Farina F, Brochier-Armanet C, Culetto E, Forterre P (2009)
Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance, Nucleic Acids Research, vol. 37 pp.5343-52

O’Brien J, Devillard S, Say L, Vanthomme H, Léger F, Ruette S, Pontier D (2009)
Preserving genetic integrity in a hybridising world: are European Wildcats (Felis silvestris silvestris) in eastern France distinct from sympatric feral domestic cats?, Biodiversity and Conservation, vol. 18 pp.2351-2360

O’Brien J, Mariani C, Olson L, Russel A-L, Say L, Yoder A-D, Hayden T-J (2009)
Multiple colonisations of the western Indian Ocean by Pteropus fruit bats (Megachiroptera: Pteropodidae): The furthest islands were colonised first, Molecular Phylogenetics and Evolution, vol. 51 pp.294-303

Oprisiu-Fournier R, Faure S, Mazouz H, Boutitie F, Serot JM, Achard JM, Godefroy O, Hanon O, Temmar M, Albu A, Strandgaard S, Wang J, Black SE, Fournier A (2009)
Angiotensin AT1-receptor blockers and cerebrovascular protection: do they actually have a cutting edge over angiotensin-converting enzyme inhibitors?, Expert review of neurotherapeutics, vol. 9(9) pp.1289-1305

order RAISIN Working Group in alphabetical, Astagneau P, Bernet C, Bussy-Malgrange V, Coignard B, Desenclos J-C, Dumartin C, Fabry J, Jarlier V, Jarno P, Lejeune B, Thiolet J-M, May L, Parneix P, Rabaud C, Salomon V, Sénéchal H, Savey A, Talon D (2009)
Surveillance and outbreak reports, Euro Surveillance, vol. 14(46) pp.1-8

Ouahmane L, Revel JC, Hafidi M, Thioulouse J, Prin Y, Galiana A, Dreyfus B, Duponnois R (2009)
Responses of Pinus halepensis growth soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation, Plant Soil, vol. 320 (1-2) pp.169-179

Papaleo MC, Russo E, Fondi M, Emiliani G, Frandi A, Brilli M, Pastorelli R, Fani R (2009)
Structural evolutionary and genetic analysis of the histidine biosynthetic core in the genus Burkholderia, Gene, vol. 448(1) pp.16-28

Pasquier J-C, Picaud J-C, Rabilloud M, Claris O, Ecochard R, Moret S, Mellier G (2009)
Neonatal outcomes after elective delivery management of preterm premature rupture of the membranes before 34 weeks’ gestation (DOMINOS study), European Journal of Obstetrics Gynecology and Reproductive Biology, vol. 143(1) pp.18-23

Patot S, Lepetit D, Charif D, Varaldi J, Fleury F (2009)
Molecular Detection Penetrance and Transmission of an Inherited Virus Responsible for Behavioral Manipulation of an Insect Parasitoid, Applied and environmental microbiology, vol. 75 pp.703-710

Pavoine S, Vallet J, Dufour A-B, Gachet S, Daniel H (2009)
On the challenge of treating various types of variables: application for improving the measurement of functional diversity, OIKOS, vol. 118(3) pp.391-402

Payet V, Ramirez-Sierra MJ, Rabinovich J, Menu F, Dumonteil E (2009)
Variations in Sex Ratio Feeding and Fecundity of Triatoma dimidiata (Hemiptera: Reduviidae) Among Habitats in the Yucatan Peninsula Mexico, Vector-Borne and zoonotic diseases, vol. 9(3) pp.243-251

Penel S, Arigon A-M, Dufayard J-F, Sertier A-S, Daubin V, Duret L, Gouy M, Perriere G (2009)
Databases of homologous gene families for comparative genomics, BMC Bioinformatics, vol. 10 pp.1-13

Peterlongo P, Sacomoto GAT, do Lago AP, Pisanti N, Sagot M-F (2009)
Lossless filter for multiple repeats with bounded edit distance, Algorithms for Molecular Biology, vol. 4(3) pp.1-20

Picard F, Miele V, Daudin JJ, Cottret L, Robin S (2009)
Deciphering the connectivity structure of biological networks using MixNet, BMC Bioinformatics, vol. 10 pp.1-11

Pires-Cronenberger S, Nicolle M-C, Voirin N, Giard M, Luxemburger C, Vanhems P (2009)
Orion (Outbreak Reports and Intervention Studies of Nosocomial Infection) pour l’évaluation des interventions et des investigations d’épidémie dans le domaine des infections nosocomiales, Medecine et Maladies Infectieuses, vol. 39 pp.259-253

Pitala N, Ruuskanen S, Laaksonen T, Doligez B, Tschirren B, Gustafsson L (2009)
The effects of experimentally manipulated yolk androgens on growth and immune function of male and female nestling collared flycatchers TextitFicedula albicollis, Journal of Avian Biology, vol. 40(2) pp.225-230

Planchamp F, Nguyen K-A, Vial T, Nasri S, Javouhey E, Gillet Y, Ranchin B, Villard F, Floret D, Cochat P, Gueyffier F, Kassaï B (2009)
Recueil systématique et actif des evènements indésirables médicamenteux chez les enfants admis aux urgences pédiatriques, Archives de Pédiatrie, vol. 16(2) pp.106-111

Pontier D, Fouchet D, Bahi-Jaber N, Poulet H, Guiserix M, Natoli E, Sauvage F (2009)
When domestic cat (Felis silvestris catus) population structures interact with their viruses, Comptes rendus biologies, vol. 332(2-3) pp.321-328

Pontier D, Guiserix M, Fouchet D, Sauvage F (2009)
Emergence of infectious diseases: when hidden pathogens break out, Comptes rendus biologies, vol. 332(6) pp.539-547

Pouillot R, Goulet V, Delignette-Muller M-L, Mahé A, Cornu M (2009)
Quantitative Risk Assessment of Listeria monocytogenes in French Cold-Smoked Salmon: II. Risk Characterization, Risk Analysis, vol. 29(6) pp.806-819

Rajon E, Venner S, Menu F (2009)
Spatially heterogeneous stochasticity and the adaptive diversification of dormancy, Journal of Evolutionary Biology, vol. 22 pp.2094-2103

Ruuskanen S, Doligez B, Tschirren B, Pitala N, Gustafsson L, Groothuis GG, Laaksonen T (2009)
Yolk androgens do not appear to mediate sexual conflict over parental investment in the collared flycatcher /Ficedula albicollis, Hormones and Behavior, vol. 55 pp.514-519

Saby NPA, Thioulouse J, Jolivet C, Ratié C, Boulonne L, Bispo A, Arrouays D (2009)
Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data, Science of the Total Environment, vol. 407 pp.5644-5652

Saïd S, Gaillard J-M, Widmer O, Débias F, Bourgoin G, Delorme D, Roux C (2009)
What shapes intra-specific variation in home range size? A case study of female roe deer, Oikos, vol. 118 pp.1299-1306

Saint Andrieux C, Bonenfant C, Basille M, Toïgo C , Klein F (2009)
Factors affecting beech bark stripping by red deer (Cervus elaphus) in a mixed forest, Wildlife Biology, vol. 15 pp.187-196

Sanon A, Andrianjaka ZN, Prin Y, Bally R, Thioulouse J, Comte G, Duponnois R (2009)
Rhizosphere microbiota interfers with plant-plant interactions, Plant Soil, vol. 321(1-2) pp.259-278

Santin-Janin H, Garel M, Chapuis J-L, Pontier D (2009)
Assessing the performance of NDVI as a proxy for plant biomass using non-linear models: a case study on the Kerguelen archipelago, Polar Biology, vol. 32 pp.861-871

Santos CL, Tavares F, Thioulouse J, Normand P (2009)
Aphylogenomic analysis of bacterial helix^turn^helix transcription factors, FEMS Microbiology Reviews, vol. 33 pp.411-429

Sasco AJ, Day SM, Voirin N, Strauss DJ, Shavelle RM, Satgé D (2009)
Cancer mortality in Down syndrome in California, Int J Disabil Hum Dev, vol. 7(4) pp.415-422

Sassolas G, Hafdi-Nejjari Z, Remontet L, Bossard N, Belot A (2009)
Thyroid cancer: Is the incidence rise abating ?, European Journal of Endocrinology, vol. 160 pp.71-79

Schbath S, Lacroix V, Sagot M-F (2009)
Assessing the exceptionality of coloured motifs in networks, Eurasip Journal on Bioinformatics and Systems Biology, vol. 2009 pp.1-9

Servanty S, Gaillard JM, Toïgo C, Brandt S, Baubet E (2009)
Pulsed resources and climate-induced variation in the reproductive traits of wild boar under high hunting pressure, Journal of Animal Ecology, vol. 78(6) pp.1278-1290

Subtil F, Pouteil-Noble C, Toussaint S, Villard E, Rabilloud M (2009)
A Simple Modeling-free Method Provides Accurate Estimates of Sensitivity and Specificity of Longitudinal Disease Biomarkers, Methods of Information in Medicine, vol. 48(3) pp.299-305

Tannier E, Zheng C, Sankoff D (2009)
Multichromosomal median and halving problems under different genomic distances, BMC Bioinformatics, vol. 10(120) pp.1-15

Thibout Y, Guibert B, Bossard N, Tronc F, Tiffet O, de la Roche E, Mulsant P, Gamondes J-P, Baulieux J, Remontet L, Geriniere L, Souquet P-J (2009)
Is Pneumonectomy After Induction Chemotherapy for Non-small Cell Lung Cancer a Reasonable Procedure? A Multicenter Retrospective Study of 228 Cases, Journal of Thoracic Oncology, vol. 4(12) pp.1496-1503

Tolon V, Dray S, Loison A, Zeileis A, Fischer C, Baubet E (2009)
Responding to spatial and temporal variations in predation risk: space use of a game species in a changing landsape of fear, Canadian journal of zoology, vol. 87 pp.1129-1137

Tournoud M, Ecochard R, Iwaz J, Steghens J-P, Bellon G, Durieu I (2009)
Structural equations to model relationships between pulmonary function fatty acids and oxidation in cystic fibrosis, Scandinavian Journal of Clinical & Laboratory Investigation, vol. 69(1) pp.36-44

Tschirren B , Sendecka J , Groothuis T G G, Gustafsson L , Doligez B (2009)
Heritable variation in maternal yolk hormone deposition in a wild bird population, The American Naturalist, vol. 174(4) pp.492-498

Tuljapurkar S, Gaillard J-M, Coulson T (2009)
From stochastic environments to life histories and back, Philosophical transactions of the royal society B-Biological Sciences, vol. 364(1523) pp.1499-1509

Uhry Z, Remontet L, Grosclaude P, Velten M, Colonna M (2009)
Estimating infra-national incidence of colorectal cancer in France from hospital discharge database 1999-2003, Revue d`Epidémiologie et de Santé Publique, vol. 57 pp.329-336

Valeix M, Fritz H, Canevet V, Le Bel S, Madzikanda H (2009)
Do elephants prevent other African herbivores from using waterholes in the dry season?, Biodiversity and Conservation, vol. 18 pp.569-576

Valeix M, Fritz H, Loveridge AJ, Davidson Z, Hunt JE, Murindagomo F, Macdonald DW (2009)
Does the risk of encountering lions influence African herbivore behaviour at waterholes?, Behavioral Ecology and Sociobiology, vol. 63 pp.1483-1494

Valeix M, Loveridge AJ, Chamaillé-Jammes S, Davidson Z, Murindagomo F, Fritz H, Macdonald DW (2009)
Behavioral adjustments of African herbivores to predation risk by lions: Spatiotemporal variations influence habitat use, Ecology, vol. 90(1) pp.23-30

Valery L, Fritz H, Lefeuvre J-C, Simberloff D (2009)
Invasive species can also be native, Trends in Ecology and Evolution, vol. 24(11) pp.585-585

Valéry L, Fritz H, Lefeuvre J-C, Simberloff D (2009)
Ecosystem-level consequences of invasions by native species as a way to investigate relationships between evenness and ecosystem function, Biological Invasions, vol. 11(3) pp.609-617

Valiente Moro C, de Luna CJ, Tod A, Guy JH, Sparagano OAE, Zenner L (2009)
The poultry red mite Dermanyssus gallinae: a potential vector of pathogenic agents, Experimental and Applied Acarology, vol. 48(1-2) pp.93-104

Valiente Moro C, Thioulouse J, Chauve C, Normand P, Zenner L (2009)
Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting, Research in Microbiology, vol. 160 pp.63-70

Van Moorter B, Gaillard J-M, McLoughlin P-D, Delorme D, Klein F, Boyce M-S (2009)
Maternal and individual effects in selection of bed sites and their consequences for fawn survival at different spatial scales, Oecologia, vol. 159(3) pp.669-678

Van Moorter B, Visscher D, Benhamou S, Börger L, Boyce M-S, Gaillard JM (2009)
Memory keeps you at home: a mechanistic model for home range emergence, Oikos, vol. 188(5) pp.641-652

Vanpé C, Gaillard J-M, Morellet N, Kjellander P, Liberg O, Delorme D, Hewison AJM (2009)
Age-specific variation in male breeding success of a territorial ungulate species the european roe deer, Journal of Mammalogy, vol. 90(3) pp.661-665

Vanpé C, Kjellander P, Gaillard J-M, Cosson JF, Galan M, Hewison AJM (2009)
Multiple paternity occurs with low frequency in the territorial roe deer Capreolus capreolus, Biological Journal of the Linnean Society, vol. 97(1) pp.128-139

Vautrin E, Vavre F (2009)
Interactions between vertically transmitted symbionts: cooperation or conflict ?, Trends in Microbiology, vol. 17 pp.95-99

Vavre F (2009)
Eviter les tricheurs: mode de transmission et stabilité des symbioses, Biofutur, vol. 299 pp.33-35

Venner S, Feschotte C, Biémont C (2009)
Dynamics of transposable elements:towards a community ecology of the genome, Trends in Genetics, vol. 25(7) pp.317-323

Vieira C, Fablet M, Lerat E (2009)
Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements, Genome Dyn Stab, vol. pp.115-123

Vinella D, Brochier-Armanet C, Loiseau L, Talla E, Barras F (2009)
Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers, PLoS GENETICS, vol. 5 pp.261-268

Voirin N, Barret B, Metzger M-H, Vanhems P (2009)
Hospital-acquired influenza: a synthesis using the Outbreak Reports and Intervention Studies of Nosocomial Infection (ORION) statement, Journal of hospital infection, vol. 71 pp.1-14

Wang H, Boissel J-P, Nony P (2009)
Revisiting the relationship between baseline risk and risk under treatment, Emerging Themes in Epidemiology, vol. 6(1) pp.3451-3459

Zenner L, Bon G, Chauve C, Nemoz C, Lubac S (2009)
Monitoring of Dermanyssus gallinae in free-range poultry farms, Experimental and Applied Acarology, vol. 48(1-2) pp.157-166

Zrioual S, Ecochard R, Tournadre A, Lenief V, Cazalis M-A, Miossec P (2009)
Genome-Wide Comparison between IL-17A- and IL-17F- Induced Effects in Human Rheumatoid Arthritis Synoviocytes, Journal of Immunology, vol. 182(5) pp.3112-3120

inproceedings :

Braga MDV, Sagot M-F, Scornavacca C, Tannier E (2009)
The solution space of sorting by reversals, Proceedings of ISBRA`07, Lecture Notes in Bioinformatics, vol. 4463 pp.293-304

Peterlongo P, Schnel N, Pisanti N, Sagot M-F, Lacroix V (2009)
Identifying SNPs without a Reference Genome by Comparing Raw Reads, SPIRE, Springer, Lecture Notes in Computer Science, vol. 6393 pp.147-158

Pisanti N, Carvalho A, Marsan L , Sagot M-F (2009)
RISOTTO: Fast extraction of motifs with mismatches, LATIN’06, Springer Verlag, Lecture Notes in Computer Science, vol. 3887 pp.757-768

Pisanti N, Crochemore M, Grossi R, Sagot M-F (2009)
A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum, 28th International Symposium on Mathematical Foundations of Computer Science, Springer Verlag, Lecture Notes in Computer Science, vol. 2747 pp.622-632

Sagot M-F (2009)
Spelling Approximate Repeated or Common Motifs Using a Suffix Tree, 3rd Latin American Symposium on Theoretical Informatics (LATIN 98), , vol. 1380 pp.374-390

Sagot M-F, Escalier V, Viari A, Soldano H (2009)
Searching for repeated words in a text allowing for mismatches and gaps, Second South American Workshop on String Processing, pp.87-100

238 articles

article :

Achard A, Guérin-Faublée V, Pichereau V, Villers C, Leclercq R (2008)
Emergence of Macrolide Resistance Gene mph(B) in Streptococcus uberis and Cooperative Effects with rdmC-Like Gene, Antimicrobial Agents and Chemotherapy, vol. 52 pp.2767-2770

Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot M-F, Stougie L (2008)
Modes and Cuts in Metabolic Networks:Complexity and Algorithms, BioSystems, vol. 95 - n°1 pp.51-60

Afonso E, Lemoine M, Poulle M-L, Ravat M-C, Romand S, Thulliez P, Villena I, Aubert D, Rabilloud M, Riche B, Gilot-Fromont E (2008)
Spatial distribution of soil contamination by Toxoplasma gondii in relation to cat defecation behaviour in an urban area, Science Direct - International Journal for Parasitology, vol. 38 pp.1017-1023

Afonso E, Lemoine M, Poulle M-L, Ravat M-C, Romand S, Thulliez P, Villena I, Aubert D, Riche B, Rabilloud M, Gilot-Fromont E (2008)
Spatial distribution of soil contamination by Toxoplasma gondii in relation to cat defecation behaviour in an urban area, International Journal for Parasitology, vol. 38 pp.1017-1023

Allali J, Sagot M-F (2008)
A multiple layer model to compare RNA secondary structures, Software-practice and experience, vol. 38(8) pp.775-792

Allemand R, De Laclos E, Buche B, Ponel P (2008)
Anobiidae nouveaux ou méconnus de la faune de France (3e note) (Coleoptera), Bulletin de la Société entomologique de France, vol. 113(3) pp.397-402

Amoutzias GD, Véron AS, Weiner J, Robinson-Rechavi M, Bornberg-Bauer M, Oliver SG, Robertson DL (2008)
One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity, Molecular Biology and Evolution, vol. 24(3) pp.827-835

Arama V, Vladareanu R, Mihailescu R, Streinu Cercel A, Mihai C, Hristea A, Losipenco M, Arama SS, Rabilloud M (2008)
Seroprevalence and risk factors associated with herpes simplex virus infection among pregnant women, Journal of perinatal medicine, vol. 36(3) pp.206-212

Arigon A-M, Perrière G, Gouy M (2008)
Automatic identification of large collections of protein-coding or rRNA sequences, Biochimie, vol. 90 pp.609-614

Augot D, Sauvage F, Boue F, Bouloy M, Artois M, Demerson J-M, Combes B, Coudrier D, Zeller H, Cliquet F, Pontier D (2008)
Spatial and temporal patterning of bank vole demography and the epidemiology of the Puumala hantavirus in northeastern France, Epidemiology and Infection, vol. 136(12) pp.1638-1643

Awan GA, Festa-Bianchet M, Gaillard J-M (2008)
Early survival of Punjab urial, Canadian Journal of Zoology, vol. 86 pp.394-399

Bacchetta J, Cochat P, Villard F, Astier M, Vial T, Dubourg L, Hadj-Aissa A, Kassaï B (2008)
Hypersensitivity to inulin : a rare and mostly benign event, American Journal of Kidney Diseases, vol. 52(3) pp.632-633

Bacchetta J, Villard F, Vial T, Dubourg L, Bouvier R, Kassaï B, Cochat P (2008)
‘Renal hypersensitivity’ to inulin and IgA nephropathy, Pediatric Nephrology, vol. 23(10) pp.1883-1885

Bahi-Jaber N, Fouchet D, Pontier D (2008)
Stochastic extinction and the selection of the transmission mode in microparasites, Journal of the Royal Society Interface, vol. 5 pp.1031-1039

Baillif S, Ecochard R, Casoli E, Freney J, Burillon C, Kodjikian L (2008)
Adherence and kinetics of biofilm formation of Staphylococcus epidermidis to different types of intraocular lenses under dynamic flow conditions, Journal of cataract and refractive surgery, vol. 34(1) pp.153-158

Bailly-Bechet M, Kerszberg M, Gaill F, Pradillon F (2008)
A modeling approach of the influence of local hydrodynamic conditions on larval dispersal at hydrothermal vents, Journal of Theoretical Biology, vol. 255 pp.320-331

Basille M, Calenge C, Marboutin E, Andersen R, Gaillard J-M (2008)
Assessing habitat selection using multivariate statistics: some refinements of the ecological-niche factor analysis, Ecological Modelling, vol. 211 pp.233-240

Bejan-Angoulvant T, Bouvier A-M, Bossard N, Belot A, Jooste V, Launoy G, Remontet L (2008)
Hazard regression model and cure rate model in colon cancer relative survival trends: are they telling the same story?, European Journal of Epidemiology, vol. 23 pp.251-259

Belot A, Grosclaude P, Bossard N, Jougla E, Benhamou E, Delafosse P, Guizard A-V, Molinie F, Danzon A, Bara S, Bouvier A-M, Trétarre B, Binder-Foucard F, Colonna M, Daubisse L, Hédelin L, Launoy G, Le Stang N, Maynadié M, Monnereau A, Troussard X, Faivre J, Collignon A, anoray I, Arveux P, Buemi A, Raverdy N, Schvartz C, Bovet M, Chérié-Challine L, Estève J, Remontet L, Velten M (2008)
Cancer incidence and mortality in France over the period 1980-2005, Revue d Epidemiologie et de santé publique, vol. 56(3) pp.159-175

Bel-Venner MC, Dray S, Allainé D, Menu F, Venner S (2008)
Unexpected male choosiness for mates in a spider, Proceedings of The Royal Society B-Biological Sciences, vol. 275 pp.77-82

Ben-Ami F, Mouton L, Ebert D (2008)
The effects of multiple infections on the expression and evolution of virulence in a daphnia-endoparasite system, Evolution, vol. 62-7 pp.1700-1711

Benayoun B-A, Caburet S, Dipietromaria A, Bailly-Bechet M, Batista F, Fellous M, Vaiman D, Veitia R-A (2008)
The identification and characterization of a FOXL2 response element provides insights into the pathogenesis of mutant alleles, Human Molecular Genetics, vol. 17 pp.3118-3127

Berthiller J, Straif K, Boniol M, Voirin N, Benhaïm-Luzon V, Ayoub WA, Dari I, Laouamri S, Hamdi-Cherif M, Bartal M, Ben Ayed F, Sasco AJ (2008)
Cannabis Smoking and Risk of Lung Cancer in Men A Pooled Analysis of Three Studies in Maghreb, Journal of Thoracic Oncology, vol. 3(12) pp.1398-1403

Biémont C (2008)
Within-species variation in genome size, Heredity, vol. 101 pp.297-298

Biémont C (2008)
Dossier Évolution et créationnisme. Les éléments transposables : une force évolutive majeure, Natures Sciences Sociétés, vol. 16 pp.41-43

Billoir E, Delignette-Muller M-L, Péry A-RR, Charles S (2008)
A Bayesian Approach to Analyzing Ecotoxicological Data, Environmental Science & Technology, vol. 42(23) pp.8978-8984

Billoir E, Delignette-Muller M-L, Péry A-RR, Geffard O, Charles S (2008)
Statistical cautions when estimating DEBtox parameters, Journal of Theoretical Biology, vol. 254 pp.55-64

Bize P, Devevey G, Monaghan P, Doligez B, Christe P (2008)
Fecundity and survival in relation to resistance to oxidative stress in a free-living bird, Ecology, vol. 89(8) pp.2584-2593

Blanchard P, Fritz H (2008)
Seasonal variation in rumination parameters of free-ranging impalas (Aepyceros melampus), Wildlife biology, vol. 14(3) pp.372-378

Blanchard P, Sabatier R, Fritz H (2008)
Within-group spatial position and vigilance: a role also for competition? The case of impalas (Aepyceros melampus) with a controlled food supply, Behavioral ecology and sociobiology, vol. 62 pp.1863-1868

Bleyzac N (2008)
The use of pharmacokinetic models in paediatric onco-haematology: effects on clinical outcome through the examples of busulfan and cyclosporine, Fundamental & Clinical Pharmacology, vol. 22(6) pp.605-608

Boillot C, Bazin C, Tissot-Guerraz F, Droguet J, Perraude M, Cetre J-C, Trepo D, Perrodina Y (2008)
Daily physicochemical microbiological and ecotoxicological fluctuations of a hospital effluent according to technical and care activities, Science of the total environment, vol. 403 (1-3) pp.113-129

Boissel J-P, Cucherat M, Nonyc P, Chabaud S, Gueyffier F, Wright JM, Lièvre M, Leizorovicz A (2008)
New insights on the relation between untreated and treated outcomes for a given therapy effect model is not necessarily linear, Journal of Clinical Epidemiology, vol. 61(3) pp.301-307

Boissel J-P, Ribba B , Grenier E, Chapuisat G, Dronne MA (2008)
Modelling methodology in physiopathology, Progress in Biophysics & Molecular Biology, vol. 97 pp.28-39

Bougeard G, Sesboué R, Desurmont S, Berthet P, Bonadona V, Buecher B, Caron O, Colas C, Collonge-Rame M-A, Delnatte C, Dugast C, Fricker J-P, Gauthier-Villars M, Gesta P, Jonveaux P, Lasset C, Leheup B, Longy M, Nogue C (2008)
Molecular basis of the Li-Fraumeni syndrome: an update from the French LFS families, Journal of Medical Genetic, vol. 45 pp.535-538

Bourgoin G, Garel M, Van Moorter B, Dubray D, Maillard D, Marty E, Gaillard J-M (2008)
Determinants of seasonal variation in activity patterns of mouflon, Canadian Journal of Zoology, vol. 86(12) pp.1410-1418

Bourguignon L, Goutelle S, Bouniot P, Guillermet A, Burdin de Saint-Martin J, Maire P, Ducher M (2008)
Pharmacocinétique de la teicoplanine chez le sujet âgé : construction d’un modèle pour le suivi thérapeutique, Journal de Pharmacie Clinique, vol. 27 n°3 pp.189-194

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Mouly-Bertin C, Bissery A, Milon H, Dzudie A, Rabilloud M, Briccac G, Vincent M, Lantelme P (2008)
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Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, Lotteau V, Rabourdin-Combe C (2008)
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks, Nucleic Acids Research, vol. 37 pp.661-668

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DigiPINS: A database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies, Biochimie, vol. 90 pp.563-569

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Pantazis N, Touloumi G, Vanhems P (2008)
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Paparel P, Chapelon JY, Bissery A, Chesnais S, Curiel L, Gelet A (2008)
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Picard F, Daudin J -J, Koskas M, Schbath S, Robin S (2008)
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Pioz M, Loison A, Gauthier D, Gibert P, Jullien J-M , Artois M, Gilot-Fromont E (2008)
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Pioz M, Loison A, Gibert P, Jullien J-M, Artois M, Gilot-Fromont E (2008)
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Poisbleau M, Desmonts D, Fritz H (2008)
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Poissonnier L, Murat F-J, Belot A, Bouvier R, Rabilloud M, Rouvierea O, Chapelon J-Y, Geleta A (2008)
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Pontier D , Fouchet D, Bried J, Bahi-Jaber N (2008)
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Raccurt M, Baudimont F, Tirard J, Rey B, Moureaux E, Géloën A, Duchamp C (2008)
Growing in Antarctica a challenge for white adipose tissue development in Adélie penguin chicks (Pygoscelis adeliae), American Journal of Physiology-Regulatory Integrative And Comparative Physiology, vol. 295 pp.1671-1679

Ramaoui K, Guernaoui S, Boumezzough A (2008)
Entomological and epidemiological study of a new focus of cutaneous leishmaniasis in Morocco, Parasitology Research, vol. 103 pp.859-863

Rebollo R, Lerat E, Lopez Kleine L, Biémont C, Vieira C (2008)
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Remigi P, Faye A, Kane A, Deruaz M, Thioulouse J, Cissoko M, Prin Y, Galiana A, Dreyfus B, Duponnois R (2008)
The exotic legume tree species Acacia holosericea alters microbial soil functionalities and the structure of the arbuscular mycorrhizal community, Applied and Environmental Microbiology, vol. 74 pp.1485-1493

Remontet L, Mitton N, Couris CM , Iwaz J, Gomez F, Olive F, Polazzi S, Schott AM, Trombert B, Bossard N, Colonna M (2008)
Is it possible to estimate the incidence of breast cancer from medico-administrative databases?, European Journal of Epidemiology, vol. 23 pp.681-688

Reusch TBH, Veron AS, Preuss C, Weiner J, Wissler L, Beck A, Klages S, Kube M, Reinhardt R, Bornberg-Bauer E (2008)
Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress, Marine Biotechnology, vol. 10 pp.297-309

Rey B, Halsey LG, Dolmazon V, Rouanet JL, Roussel D, Handrich Y, Butler PJ, Duchamp C (2008)
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Rey B, Sibille B, Romestaing C, Belouze M, Letexier D, Servais S, Barré H, Duchamp C, Voituron Y (2008)
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Richard E, Morellet N, Cargnelutti B, Angibault J-M, Vanpé C, Hewison AJM (2008)
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Riley RD, Lambert PC, Staessen JA, Wang J, Gueyffier F, Thijs L, Boutitie F (2008)
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Rodrigues JLM, Duffy MA, Tessier AJ, Ebert D, Mouton L, Schmidt TM (2008)
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Romestaing C, Piquet M-A, Letexier D, Rey B, Belouze M, Rouleau V, Dautresme M, Ollivier I, Duchamp C, Sibille B (2008)
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Saindou M, Chidiac C, Miailhes P, Voirin N, Baratin D, Amiri M, Livrozet J-M, Touraine J-L, Trepo C, Peyramond D, Vanhems P (2008)
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Sasco AJ, Day SD, Voirin N, Strauss DJ, Shavelle R, Satgé D (2008)
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Schmidt-Lainé C, Pavé A (2008)
La modélisation au coeur de la démarche scientifique et à la confluence des disciplines, Les Cahiers du musée des Confluences, vol. pp.21-34

Schmidt LM, Mouton L, Nong G, Ebert D, Preston JF (2008)
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Seigneurin A, Colonna M, Remontet L, Delafosse P, Ecochard R (2008)
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Soares da Fonseca P, Gautier C, Guimarães Ks, Sagot M-F (2008)
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Sobh M, Cleophas TJ, Hadj-Chaib A, Zwinderman AH (2008)
Clinical Trials: Odds Ratios and Multiple Regression Models—Why and How to Assess Them, American Journal of Therapeutics, vol. 15 pp.44-52

Solberg EJ, Garel M, Heim M, Grøtan V, Sæther BE (2008)
Lack of compensatory body growth in a high performance moose Alces alces population, Oecologia, vol. 158 pp.485-498

Storms D, Aubry P, Hamann J-L, Saïd S, Fritz H, Saint-Andrieux C, Klein F (2008)
Seasonal variation in diet composition and similarity of sympatric red deer Cervus elaphus and roe deer Capreolus capreolus, Wildlife biology, vol. 14 pp.237-250

Studer A, Penel S, Duret L, Robinson-Rechavi M (2008)
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Thibault H, Piot C, Staat P, Bontemps L, Sportouch C, Rioufol G, Cung T, Bonnefoy E, Angoulvant D, Aupetit J-F, Finet G, André-Fouët X, Macia J-C, Raczka F, Rossi R, Itti R, Kirkorian G, Derumeaux G, Ovize M (2008)
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Thilly N, Stengel B, Boini S, Villar E, Couchoud C, Frimat L (2008)
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Toïgo C, Servanty S, Gaillard J-M, Brandt S, Baubet E (2008)
Disentangling Natural From Hunting Mortality in an Intensively Hunted Wild Boar Population, Journal of Wildlife Management, vol. 72 pp.1532-1539

Toulowni G, Pantazis N, Stirnadel HA, Walker AS, Boufassa F, Vanhems P, Porter K (2008)
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Tournoud M, Ecochard R (2008)
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Tournoud M, Ecochard R, Kuhn L, Coutsoudis A (2008)
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Tronc F, Conter C, Marec-Berard P, Bossard N, Remontet L, Orsini A, Gamondes J-P, Louis D (2008)
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Tronchon V, Vialard F, El Sirkasi M, Dechaud H, Rollet J, Albert M, Bailly M, Roy P, Mauduit C, Fenichel P, Selva J, Benahmed M (2008)
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Truntzer C, Maucort-Boulch D, Roy P (2008)
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Urbonavicius J, Auxilien S, Walbott H, Trachana K, Golinelli-Pimpaneau B, Brochier-Armanet C, Grosjean H (2008)
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Valeix M, Fritz H, Chamaillé-Jammes S, Bourgarel M, Murindagomo F (2008)
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Valeix M, Fritz H, Matsika R, Matsvimbo F, Madzikanda H (2008)
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Valery L, Fritz H, Lefeuvre J-C, Simberloff D (2008)
In search of a real definition of the biological invasion phenomenon itself, Biological Invasions, vol. 10(8) pp.1345-1351

Vanhems P, Baratin D, Voirin N, Savey A, Caillat-Vallet E, Metzger M-H, Lepape A (2008)
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Van Moorter B, Gaillard J-M, Hewison AJM, Said S, Coulon A, Delorme D, Widmer O, Cargnelutti B, Angibault JM (2008)
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Vautrin E, Genieys S, Charles S, Vavre F (2008)
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Véron AS, Kaufmann K, Bornberg-Bauer E (2008)
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Veyre-Goulet S, Mercier C, Robin O, Guerin C (2008)
Recent Human Sexual Dimorphism Study Using Cephalometric Plots on Lateral Teleradiography and Discriminant Function Analysis, Journal of Forensic Sciences, vol. 53 - N°4 pp.1-38

Villar E, Frimat L, Ecochard R, Labeeuw M, Vincent F, Wrobleski I, Danel V (2008)
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Voirin N, Routy J-P, Smith D, Baratin D, Trepo C, Cotte L, Touraine J-L, Livrozet J-M, Cooper DA, Ritter J, Andre P, Vanhems P (2008)
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Weladji RB, Loison A, Gaillard J-M, Holand O, Mysterud A, Yoccoz NG, Nieminen M, Stenseth NC (2008)
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Zetoune AB, Fontaniere S, Magnin D, Anczukow O, Buisson M, Zhang CX, Mazoyer S (2008)
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Lacroix V, Fernandes CG, Sagot M-F (2008)
Reaction motifs in metabolic networks, Proceedings of WABI `05, Springer-Verlag, Lecture Notes in Computer Science, vol. 3692 pp.178-191

Peterlongo P, Pisanti N, Boyer F, Sagot M-F (2008)
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Auclair J, Leroux D, Desseigne F, Lasset C, Saurin JC, Joly MO, Pinson S, Li Xu X, Montmain G, Ruano E, Navarro C, Puisieux A, Wang Q (2007)
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Tuberculose nosocomiale : investigation autour d’un cas diagnostiqué chez un soignant, Bulletin épidémiologique hebdomadaire, vol. 17 pp.137-144

Maklakov A A, Kremer N, Arnqvist G (2007)
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A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry, Molecular Biology and Evolution, vol. 24 pp.2169-2179

Nellemann C, Støenb O-G, Kindberg J, Swenson JE, Vistnes I, Ericsson G, Katajisto J, Kaltenborn BP, Martin J, Ordiz A (2007)
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Ouahmane L, Thioulouse J, Hafidi M, Prin Y, Galiana A, Plenchette C, Kisa M, R Duponnois (2007)
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Pasquier JC, Bujold E, Rabilloud M, Picaud JC, Écochard R, Claris O, Moret S, Mellier G (2007)
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Pasquier JC, Morelle M, Bagouet S, Moret S, Luo ZC, Rabilloud M, Gaucherand P, Robert-Gnansia E (2007)
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Pavé A (2007)
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Pavé A (2007)
"Eau et territoires: quelles priorités pour la recherche ?", Natures Sciences Sociétés, vol. 15 pp.424-426

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A new technique for ordering asymmetrical three-dimensional data sets in ecology, Ecology, vol. 88 pp.512-523

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A segmentation/clustering model for the analysis of array CGH data, Biometrics, vol. 63 pp.758-766

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Plummer M, Schiffman M, Castle PE, Maucort-Boulch D, Wheeler CM (2007)
A 2-year prospective study of human papillomavirus persistence among women with a cytological diagnosis of atypical squamous cells of undetermined significance or low-grade squamous intraepithelial lesion, Journal of infectious diseases, vol. 195 pp.1582-1589

Poisbleau M, Dalloyau S, Fritz H, Bost C-A, Ebbinge B-S (2007)
Brent goose Branta bernicla bernicla feeding behaviour durin incubation Taïmyr Perinsula Russia, Polar Biology, vol. 30 pp.1343-1349

Pommier P, Chabaud S, Lagrange JL, Richaud P, Lesaunier F, Le Prise E, Wagner JP, Huor Hay M, Beckendorf V, Suchaud JP, Pabot du Chatelard PM, Bernier V, Voirin N, Perol D, Carrie C (2007)
Is There a Role for Pelvic Irradiation in Localized Prostate Adenocarcinoma? Preliminary Results of GETUG-01, Journal of Clinical Oncology, vol. 25 pp.5366-5373

Pouillot R, Miconnet N, Afchain A-L, Delignette-Muller M-L, Beaufort A, Rosso L, Denis J-B, Cornu M (2007)
Quantitative Risk Assessment of Listeria monocytogenes in French Cold-Smoked Salmon: I. Quantitative Exposure Assessment, Risk Analysis, vol. 27 pp.806-819

Pradat P, Voirin N, Tillmann HL, Chevallier M , Trépo C (2007)
Progression to cirrhosis in hepatitis C patients: an age-dependent process, Liver International, vol. 27 pp.335-339

Ramanankierana N, Ducousso M, Rakotoarimanga N, Prin Y, Thioulouse J, Randrianjohany E, Ramaroson L, Kisa M, Galiana A, Duponnois R (2007)
Arbuscular mycorrhizas and ectomycorrhizas of Uapaca bojeri L. (Euphorbiaceae): sporophore diversity patterns of root colonization and effects on seedling growth and soil microbial catabolic diversity, Mycorrhiza, vol. 17 pp.195-208

Ramos-Onsins SE, Mousset S, Mitchell-Olds T, Stephan W (2007)
Population genetic inference using a fixed number of segregating sites : a reassessment, Genetical Research, vol. 89 pp.231-244

Refardt D, Mouton L (2007)
Reverse Arrangement of rRNA Subunits in the Microsporidium Glugoides intestinalis, Journal of Eukaryotic Microbiology, vol. 54 pp.83-85

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An overall strategy based on regression models to estimate relative survival and model the effects of prognostic factors in cancer survival studies, Statistics in Medicine, vol. 26 pp.2214-2228

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Rodrigues E , Sagot M-F, Wakabayashi Y (2007)
The maximum agreement forest problem: Approximation algorithms and computational experiments, Theoretical Computer Science, vol. 374 pp.91-110

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Saadatian-Elahi M, Facy F, Del Signore C , Vanhems P (2007)
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Saadatian-Elahi M, Mekki Y, Del Signore C, Lina B, Derrough T, Caulin E, Thierry J, Vanhems P (2007)
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Sahajian F, Vanhems P, Bailly F, Fabry J, Trepo C, Sepetjan M (2007)
Infectious and allergic diseases cancer and diabetes : Screening campaign of hepatitis C among underprivileged people consulting in health centres of Lyon area France, European Journal of Public Health, vol. 17 pp.263-271

Sahajian F, Vanhems P, Bailly F, Fabry J, Trepo C, Sepetjan M (2007)
Screening campaign of hepatitis C among underprivileged people consulting in health centres of Lyon area France, European Journal of Public Health, vol. 17 pp.263-271

Sauvage F, Langlais M, Pontier D (2007)
Predicting the emergence of human hantavirus disease using a combination of viral dynamics and rodent demographic patterns, Epidemiology and Infection, vol. 135 pp.46-56

Servanty S, Gaillard J-M, Allainé D, Brandt S, Baubet E (2007)
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Skilton MR, Moulin P, Sérusclat A, Nony P, Bonnet F (2007)
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Solberg EJ, Heim M, Grøtan V, Sæther BE, Garel M (2007)
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Spataro T, Bernstein C (2007)
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Suetens C, Morales I, Savey A, Palomar M, Hiesmayr M, Lepape A, Gastmeier P, Schmit JC, Valinteliene R, Fabry J (2007)
European surveillance of ICU-acquired infections (HELICS-ICU): methods and main results, Journal of hospital infection, vol. 65 pp.171-173

Tannier E, Bergeron A, Sagot M-F (2007)
Advances on sorting by reversals, Discrete Applied Mathematics, vol. 155 pp.881-888

Thai-Van H, Cozma S, Boutitie F, Disant F, Truy E, Collet L (2007)
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Thiolet JM, Lacavé L, Jarno P, Metzger M-H, Tronel H, Gautier Ch , L’hériteau F , Coignard B (2007)
Prévalence des infections nosocomiales France 2006, Bulletin épidémiologique hebdomadaire, vol. 51-52 pp.429-432

Thiolet JM, Lacavé L, Jarno P, Metzger M-H, Tronel H, Gautier Ch, L’hériteau F, Coignard B (2007)
Prévalence des infections nosocomiales France 2006, Hygiénes, vol. 15 pp.349-354

Thioulouse J, Dray S (2007)
Interactive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages, Journal of Statistical Software, vol. 22 pp.1-14

Toïgo C, Gaillard J-M, Festa-Bianchet M, Largo E, Michallet J, Maillard D (2007)
Sex- and age-specific survival of the highly dimorphic Alpine ibex: evidence for a conservative life-history tactic, Journal of Animal Ecology, vol. 76 pp.679-686

Tournoud M, Écochard R (2007)
Application of the promotion time cure model with time-changing exposure to the study of HIV/AIDS and other infectious diseases, Statistics in Medicine, vol. 26 pp.1008-1021

Truntzer C, Mercier C, Estève J, Gautier C, Roy P (2007)
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Truy E, Naiman AN , Abedipour D, Lina G, Rabilloud M (2007)
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Uhry Z, Colonna M, Remontet L, Grosclaude P, Carre N, Couris CM, Velten M (2007)
Estimating infra-national and national thyroid cancer incidence in France from cancer registries data and national hospital discharge database, European Journal of Epidemiology, vol. 22 pp.607-614

Urbonavicius J, Brochier-Armanet C, Skouloubris S, Myllykallio H, Grosjean H (2007)
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Valeix M, Chamaillé-Jammes S, Fritz H (2007)
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Valeix M, Fritz H, Dubois S, Kanengoni K, Alleaume S, Saïd S (2007)
Vegetation structure and ungulate abundance over a period of increasing elephant abundance in Hwange National Park Zimbabwe, Journal of Tropical Ecology, vol. 23 pp.87-93

Valiente Moro C, Chauve C, Zenner L (2007)
Experimental infection of Salmonella Enteritidis by the poultry red mite Dermanyssus gallinae, Veterinary Microbiology, vol. 146(3) pp.329-336

Valiente Moro C, Desloire S, Chauve C, Zenner L (2007)
Detection of Salmonella sp. in Dermanyssus gallinae using an FTA ® filter-based polymerase chain reaction, Medical and Veterinary Entomology, vol. 21(2) pp.148-152

Valiente Moro C, Desloire S, Vernozy-Rozand C, Chauve C, Zenner L (2007)
Comparison of the VIDAS® system FTA® filter-based PCR and culture on SM ID for detecting Salmonella in Dermanyssus gallinae, Letters in Applied Microbiology, vol. 44(4) pp.431-436

Valiente Moro C, Fravalo P, Amelot M, Chauve C, Zenner L, Salvat G (2007)
Colonization and organ invasion in chicks experimentally infected with Dermanyssus gallinae contaminated by Salmonella Enteritidis, Avian Pathology, vol. 36(4) pp.307-311

Valière N, Bonenfant C, Toïgo C, Luikart G, Gaillard J-M, Klein F (2007)
Importance of a pilot study for non-invasive genetic sampling: genotyping errors and population size estimation in red deer, Conservation Genetics, vol. 8 pp.69-78

Van Gossum H, Beatty CD , Charlat S , Waqa H , Markwell T , Skevington JH, Tuiwawa M, Sherratt TN (2007)
Male rarity and putative sex-role reversal in Fijian damselflies (Odonata), Journal of Tropical Ecology, vol. 23 pp.591-598

Vanhems P, Pires-Cronenberger S, Lasset C (2007)
Sporadic and epidemic community legionellosis: two faces of the same illness, European Respiratory Journal, vol. 30 pp.813-813

Vanpé C, Gaillard J-M, Kjellander P, Mysterud A, Magnien P, Delorme D, Van Laere G, Klein F, Liberg O, Hewison AJM (2007)
Antler Size Provides an Honest Signal of Male Phenotypic Quality in Roe Deer, The American Naturalist, vol. 169 pp.481-493

Varaldi J, Patot S, Maache M, Lepetit D , Fleury F (2007)
Behavioural manipulation of insect parasitoids by a maternally inherited virus: ecological consequences and potential applications for biological control, Entomological Research, vol. 37 pp.A11-A73

Vautrin E, Charles S, Genieys S, Vavre F (2007)
Evolution and invasion dynamics of multiple infections with Wolbachia investigated using matrix based models., Journal of Theoretical Biology, vol. 245 pp.197-209

Veiberg V, Mysterud A, Bjørkvoll E, Langvatn R , Loe LE, Irvine J, Bonenfant C, Couweleers F , Stenseth NC (2007)
Evidence for a trade-off between early growth and tooth wear in Svalbard reindeer, Journal of Animal Ecology, vol. 76(6) pp.1139-1148

Veiberg V, Mysterud A, Gaillard J-M, Delorme D, Van Laere G, Klein F (2007)
Bigger teeth for longer life? Longevity and molar height in two roe deer populations, Biology Letters, vol. 3 pp.268-270

Vergne AL, Avril A, Martin S, Mathevon N (2007)
Parent-offspring communication in the Nile crocodile Crocodylus niloticus: do newborns` calls show an individual signature?, Naturwissenschaften, vol. 94 pp.49-54

Villar E, Boissonnat P, Sebbag L, Hendawy A, Cahen R, Trolliet P, Labeeuw M, Écochard R, Pouteil-Noble C (2007)
Poor outcome in heart transplant patients with end-stage renal failure, Nephrology Dialysis Transplantation, vol. 22(5) pp.1383-1389

Villar E, Remontet L, Labeeuw M, Ecochard R (2007)
Effect of age sex and diabetes on excess death in end-stage renal failure, Journal of the American Society of Nephrology, vol. 18(7) pp.2125-2134

Vimont A, Delignette-Muller M-L, Vernozy-Rozand C (2007)
Supplementation of enrichment broths by novobiocin for detecting Shiga toxin-producing Escherichia coli from food: a controversial use, Letters in applied microbiology, vol. 44 pp.326-331

Vimont A, Vernozy-Rozand C, Montet M-P, Bavai C, Fremaux B, Delignette-Muller M-L (2007)
Growth of Shiga-Toxin producing Escherichia coli (STEC) and bovine feces background microflora in various enrichment protocols, Veterinary Microbiology, vol. 123 pp.274-281

You B, Blandin S, Gérinière L, Lasset C, Souquet P-J (2007)
Mésothéliomes familiaux : une composante génétique associée aux risques environnementaux ?, Bulletin du Cancer, vol. 94 pp.705-710

Zaoui S, Biémont C, Meguenni K (2007)
Approche épidémiologique du diabète dans les milieux rural et urbain de la région de Tlemcen Ouest, Cahier Santé, vol. 17 pp.15-21

Zchori-Fein E, Gottlieb Y, Czosnek H, Chiel E, Vavre F, Fleury F, Inbar M, Ghanim M (2007)
Tomato yellow leaf curl virus transmission efficacy is determined by symbiotic bacteria in the vector the sweet potato whitefly Bemisia tabaci, Entomological Research, vol. 37(1) pp.A42-A43

inproceedings :

Melodelima C, Guéguen L, Gautier C, Piau D (2007)
A Markovian Approach for the Analysis of the Gene Structure, Proceedings of the Prague Stringology Conference, , vol. 19(1) pp.19-35

Ouangraoua A, Boyer F, McPherson A, Tannier E, Chauve C (2007)
Prediction of Contiguous Regions in the Amniote Ancestral Genome, Proceedings of ISBRA`09, Springer, Lecture Notes in Bioinformatics, vol. 5542 pp.173-185

Rodrigues EM, Sagot M-F, Wakabayashi Y (2007)
Some approximation results for the maximum agreement forest problem, Approximation Randomization and Combinatorial Optimization: Algorithms and Techniques (APPROX & RANDOM 2001), Springer Verlag, Lecture Notes in Computer Science, vol. 2129 pp.159-169

Tannier E, Sagot M-F (2007)
Sorting by reversals in subquadratic time, Proceedings of CPM`04, Springer Verlag, Lecture Notes in Computer Science, vol. 3109 pp.1-13

Tannier E, Zheng C, Sankoff D (2007)
Multichromosomal Genome Median and Halving Problems, Proceedings of WABI`08, Springer-Verlag, Lecture notes in Bioinformatics, vol. 5251 pp.1-13