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UMR CNRS 5558 - LBBE "Biométrie et Biologie Évolutive" UCB Lyon 1 - Bât. Grégor Mendel 43 bd du 11 novembre 1918 69622 VILLEURBANNE cedex
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You can visit my personal home page here: http://pbil.univ-lyon1.fr/JTHome.html.
+Publications -Publications
article :
Dequiedt S, Lelièvre M, Jolivet C, Saby NPA, Martin M, Thioulouse J, Maron P-A, Mougel C, Chemidlin Prévost-Bouré N, Arrouays D, Lemanceau P, Ranjard L (2009)
ECOMIC-RMQS: biogéographie microbienne à l`échelle de la France, Etude et Gestion des Sols, vol. 16(3) pp.219-231
Dequiedt S, Thioulouse J, Jolivet C, Savy NPA, Lelievre M, Maron P-A, Martin M, Chemidlin Prévost-Bouré N, Toutain B, Arrouays D, Lemanceau P, Ranjard L (2009)
Biogeographical patterns of soil bacterial communities, Environmental Microbiology Reports, vol. 1(4) pp.251-255
Faye A, Krasova-Wabe T, Thiao M, Thioulouse J, Neyra M, Prin Y, Galiana A, Ndoye I, Dreyfus B, Duponnois R (2009)
Controlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia, Soil Biology & Biochemistry, vol. 41(6) pp.1245-1252
Ouahmane L, Revel JC, Hafidi M, Thioulouse J, Prin Y, Galiana A, Dreyfus B, Duponnois R (2009)
Responses of Pinus halepensis growth soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation, Plant Soil, vol. 320 (1-2) pp.169-179
Saby NPA, Thioulouse J, Jolivet C, Ratié C, Boulonne L, Bispo A, Arrouays D (2009)
Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data, Science of the Total Environment, vol. 407 pp.5644-5652
Sanon A, Andrianjaka ZN, Prin Y, Bally R, Thioulouse J, Comte G, Duponnois R (2009)
Rhizosphere microbiota interfers with plant-plant interactions, Plant Soil, vol. 321(1-2) pp.259-278
Santos CL, Tavares F, Thioulouse J, Normand P (2009)
Aphylogenomic analysis of bacterial helix^turn^helix transcription factors, FEMS Microbiology Reviews, vol. 33 pp.411-429
Valiente Moro C, Thioulouse J, Chauve C, Normand P, Zenner L (2009)
Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting, Research in Microbiology, vol. 160 pp.63-70
Remigi P, Faye A, Kane A, Deruaz M, Thioulouse J, Cissoko M, Prin Y, Galiana A, Dreyfus B, Duponnois R (2008)
The exotic legume tree species Acacia holosericea alters microbial soil functionalities and the structure of the arbuscular mycorrhizal community, Applied and Environmental Microbiology, vol. 74 pp.1485-1493
Andrianjaka Z, Bally R, Lepage M, Thioulouse J, Comte G, Duponnois R (2007)
Biological control of Striga hermonthica by Cubitermes termite mound powder amendment in sorghum culture, Applied Soil Ecology, vol. 37 pp.175-183
Kisa M, Sanon A, Thioulouse J, Assigbetse K, Sylla S, Dieng L, Berthelin J, Prin Y, Galiana A , Lepage M, Duponnois R (2007)
Arbuscular mycorrhizal symbiosis can counterbalance the negative influence of the exotic tree species Eucalyptus camaldulensis on the structure and functioning of soil microbial communities in a sahelian soil, FEMS Microbiology Ecology, vol. 62 pp.32-44
Lasne F, Thioulouse J, Martin L, de Ceaurriz J (2007)
Detection of recombinant human erythropoietin in urine for doping analysis: interpretation of isoelectric profiles by discriminant analysis, Electrophoresis, vol. 28 pp.1875-1881
Ouahmane L, Hafidi M, Thioulouse J, Ducousso M, Kisa M, Prin Y, Galiana A, Boumezzough A, Duponnois R (2007)
Improvement of Cupressus atlantica Gaussen growth by inoculation with native arbuscular mycorrhizal fungi, Journal of Applied Ecology, vol. 103 pp.683-690
Ouahmane L, Thioulouse J, Hafidi M, Prin Y, Galiana A, Plenchette C, Kisa M, R Duponnois (2007)
Soil functional diversity and P solubilization from rock phosphate after inoculation with native or allochtonous arbuscular mycorrhizal fungi, Forest Ecology and Management, vol. 241 pp.200-208
Ramanankierana N, Ducousso M, Rakotoarimanga N, Prin Y, Thioulouse J, Randrianjohany E, Ramaroson L, Kisa M, Galiana A, Duponnois R (2007)
Arbuscular mycorrhizas and ectomycorrhizas of Uapaca bojeri L. (Euphorbiaceae): sporophore diversity patterns of root colonization and effects on seedling growth and soil microbial catabolic diversity, Mycorrhiza, vol. 17 pp.195-208
Thioulouse J, Dray S (2007)
Interactive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages, Journal of Statistical Software, vol. 22 pp.1-14
Culhane AC, Thioulouse J (2006)
A multivariate approach to integrating Datasets using made4 and ade4, R News, vol. pp.1-15
Diallo MD, Duponnois R, Guisse A, Sall S, Chotte J-L, Thioulouse J (2006)
Biological effects of native and exotic plant residues on plant growth microbial biomass and N availability under controlled conditions, European Journal of Soil Biology, vol. 42 pp.238-246
Duponnois R, Assikbetse K, Ramanankierana H, Kisa M, Thioulouse J, Lepage M (2006)
Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates, FEMS Microbiology Ecology, vol. 56 pp.292-303
Duponnois R, Kisa M, Assigbetse K, Prin Y, Thioulouse J, Issartel M, Moulin P, Lepage M (2006)
Fluorescent pseudomonads occurring in Macrotermes subhyalinus mound structures decrease Cd toxicity and improve its accumulation in sorghum plants, Science of the Total Environment, vol. 370 pp.391-400
Le Hesran JY, Fievet N, Thioulouse J, Personne P, Maubert B, M`bidias S, Etye`ale D, Cot M, Deloron P (2006)
Development of cellular immune responses to Plasmodium falciparum blood stage antigens from birth to 36 months of age in Cameroon, Acta Tropica, vol. 98 pp.261-269
Ouahmane L, Duponnois R, Hafidi M, Kisa M, Boumezzough A, Thioulouse J, Plenchette C (2006)
Some Mediterranean plant species (Lavandula spp. and Thymus satureioides) act as potential `plant nurses` for the early growth of Cupressus atlantica, Plant Ecology, vol. 185 pp.123-134
Ouahmane L, Hafidi M, Plenchette C, Kisa M, Boumezzough A, Thioulouse J, Duponnois R (2006)
Lavandula species as accompanying plants in Cupressus replanting strategies : Effect on plant growth mycorrhizal soil infectivity and soil microbial catabolic diversity, Applied Soil Ecology, vol. pp.190-199
Portier P, Fischer-Le Saux M, Mougel C, Lerondelle C, Chapulliot D, Thioulouse J, Nesme X (2006)
Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers., Applied and Environmental Microbiology, vol. 72 pp.7123-7131
Ramanankierana N, Rakotoarimanga N, Thioulouse J, Marija K, Randrianjohany E, Ramaroson L, Duponnois R (2006)
The Ectomycorrhizosphere Effect Influences Functional Diversity of Soil Microflora, International Journal of Soil Sciences, vol. 1 pp.8-19
Sanguin H, Remenat B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y, Grundmann GL (2006)
Potential of 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities, Applied and Environmental Microbiology, vol. 72 pp.4302-4312
Sanon A, Martin P, Thioulouse J, Plenchette C, Spichiger R, Lepage M, Duponnois R (2006)
Displacement of an herbaceous plant species community by mycorrhizal and non-mycorrhizal Gmelina arborea an exotic tree grown in a microcosm experiment, Mycorrhiza, vol. 16 pp.125-132
Assigbetse K, Gueye M, Thioulouse J, Duponnois R (2005)
Soil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth dependent, Microbial Ecology, vol. 50 pp.350-359
Cadet P, Masse D, Thioulouse J (2005)
Relationships between plant-parasitic nematode community fallow duration and soil factors in the Sudano-Sahelian area of Senegal, Agriculture Ecosystems & Environment, vol. 108 pp.302-317
Charif D, Thioulouse J, Lobry JR, Perrière G (2005)
Online synonymous codon usage analyses with the ade4 and seqinR packages, Bioinformatics, vol. 21 pp.545-547
Culhane AC, Thioulouse J, Perrière G, Higgins DG (2005)
MADE4: an R package for multivariate analysis of gene expression data, Bioinformatics, vol. 21 pp.2789-2790
Duponnois R, Colombet A, Hien V, Thioulouse J (2005)
The mycorrhizal fungus Glomus intraradices and rock phosphate amendment influence plant growth and microbial activity in the rhizosphere of Acacia holosericea, Soil Biology and Biochemistry, vol. 37 pp.1460-1468
Duponnois R, Paugy M, Thioulouse J, Masse D, Lepage M (2005)
Functional diversity of soil microbial community rock phosphate dissolution and growth of Acacia seyal as influenced by grass- litter- and soil-feeding termite nest structure amendments, Geoderma, vol. 124 pp.349-361
Chessel D, Dufour A-B, Thioulouse J (2004)
The ade4 package - I : One-table methods, R News, vol. 4 pp.5-10
Naizot T, Auda Y, Dervieux A, Thioulouse J, Bellan MF (2004)
Une nouvelle analyse multi-temporelle d`images satellitales les residus de l`Analyse en Composantes Principales. Un cas d`etude: une serie d`images Landsat Thematic Mapper de la Camargue France., International Journal of Remote Sensing, vol. 25 pp.1925-1938
Thioulouse J, Simier M, Chessel D (2004)
Simultaneous analysis of a sequence of paired ecological tables with the STATICO method, Ecology, vol. 85 pp.272-283
Cadet P, Pate E, Thioulouse J (2003)
Relationship of nematode communities to human demographics and environment in agricultural fields and fallow lands in Senegal., Journal of Tropical Ecology, vol. 19 pp.279-290
Dray S, Chessel D, Thioulouse J (2003)
Co-inertia analysis and the linking of ecological tables, Ecology, vol. 84 pp.3078-3089
Dray S, Chessel D, Thioulouse J (2003)
Procustean co-inertia analysis for the linking of multivariate datasets, Ecoscience, vol. 10 pp.110-119
Ollier S, Chessel D, Couteron P, Pélissier R, Thioulouse J (2003)
Comparing and classifying one-dimensional spatial patterns: an application to laser altimeter profiles., Remote Sensing of Environment, vol. 85 pp.453-462
Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G (2003)
Integrated databanks access and sequence/structure analysis services at the PBIL., Nucleic Acids Research, vol. 31 pp.3393-3399
Perrière G, Thioulouse J (2003)
Use of Correspondence Discriminant Analysis to predict the subcellular location of bacterial proteins, Computer Methods and Programs in Biomedicine, vol. 70 pp.99-105
Vogel J, Normand P, Thioulouse J, Nesme X, Grundmann G (2003)
Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil., Applied and Environmental Microbiology, vol. 69 pp.1482-1487
Founoune H, Duponnois R, Meyer JM, Thioulouse J, Masse D, Chotte J-L, Neyra M (2002)
Interactions between ectomycorrhizal symbiosis and fluorescent pseudomonads on Acacia holosericea: isolation of mycorrhiza helper bacteria (MHB) from a Soudano-Sahelian soil, FEMS Microbiology Ecology, vol. 41 pp.37-46
Jarraud S, Mougel C, Thioulouse J, Lina G, Meugnier H, Forey F, Nesme X, Etienne J, Vandenesch F (2002)
Relationships between Staphylococcus aureus genetic background virulence factors agr groups (alleles) and human disease., Infection and Immunity, vol. 70 pp.631-641
Mougel C, Thioulouse J, Perrière G, Nesme X (2002)
A mathematical method for determining genome divergence and species delineation using AFLP, International Journal of Systematic and Evolutionary Microbiology, vol. 52 pp.573-586
Perrière G, Thioulouse J (2002)
Use and misuse of correspondence analysis in codon usage studies, Nucleic Acids Research, vol. 30 pp.4548-4555
Pontier D, Say L, Débias F, Bried J, Thioulouse J, Micol T, Natoli E (2002)
The diet of feral cats (Felis catus L.) at five sites on the Grande Terre Kerguelen archipelago., Polar Biology, vol. 25 pp.833-837
Duponnois R, Plenchette C, Thioulouse J, Cadet P (2001)
Mycorrhizal soil infectivity and AM fungal spore communities of different aged fallows in Senegal, Applied Soil Ecology, vol. 17 pp.239-251
Mougel C, Teyssier S, d`Angelo C, Groud K, Neyra M, Sidi-Boumedine K, Cloeckaert A, Peloille M, Baucheron S, Chaslus-Dancla E, Jarraud S, Meugnier H, Forey F, Vandenesch F, Lina G, Etienne J, Thioulouse J, Manceau C, Robbe P, Nalin R, Briolay J, Nesme X (2001)
Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics, Genetics Selection Evolution, vol. 33 pp.S319-S338
Ranjard L, Poly F, Lata J C, Mougel C, Thioulouse J, Nazaret S (2001)
Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability, Applied and Environmental Microbiology, vol. 67 pp.4479-4487
Duponnois R, Fargette M, Fould S, Thioulouse J, Davies KG (2000)
Diversity of the bacterial hyperparasite Pasteuria penetrans in relation to the control of root-knot nematodes (Meloidogyne spp.) on Acacia holosericea, Nematology, vol. 2 pp.435-442
Duponnois R, Founoune H, Lesueur D, Thioulouse J, Neyra M (2000)
Ectomycorrhization of six Acacia auriculiformis provenances from Australia Papua New Guinea and Senegal in glasshouse conditions: effect on the plant growth and on the multiplication of plant parasitic nematodes, Australian Journal of Experimental Agriculture, vol. 40 pp.443-450
Manlay R, Cadet P, Thioulouse J, Chotte JL (2000)
Relationships between abiotic and biotic soil properties during fallow periods in the sudanian zone of Senegal, Applied Soil Ecology, vol. 14 pp.89-101
Pate E, Ndiaye-Faye N, Thioulouse J, Villenave C, Bongers T, Cadet P, Debouzie D (2000)
Successional trends in the characteristics of soil nematodes communities in cropped and fallow lands in Senegal (Sonkorong), Applied Soil Ecology, vol. 14 pp.5-15
Ranjard L, Nazaret S, Gourbiere F, Thioulouse J, Linet P, Richaume A (2000)
A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints, FEMS Microbiology Ecology, vol. 31 pp.107-115
Ranjard L, Poly F, Combrisson J, Richaume A, Gourbiere F, Thioulouse J, Nazaret S (2000)
Heterogeneous Cell Density and Genetic Structure of Bacterial Pools Associated with Various Soil Microenvironments as Determined by Enumeration and DNA Fingerprinting Approach (RISA), Microbial Ecology, vol. 39 pp.263-272
Reynaud PA, Thioulouse J (2000)
Identification of birds as biological markers along a neotropical urban-rural gradient using co-inertia analysis, Journal of Environmental Management, vol. 59 pp.121-140
Duponnois R, Senghor K, Thioulouse J, Ba A (1999)
Susceptibility of several sahelian Acacia to Meloidogyne javanica (Treub) Chitw, Agroforestry Systems, vol. 46 pp.123-130
Cadet P, Thioulouse J (1998)
Identification of soil factors that relate to the structure of the plant parasitic nematode community, Applied Soil Ecology, vol. 8 pp.35-49
Robert V, Awono-Ambene HP, Thioulouse J (1998)
Ecology of larval mosquitoes with special reference to Anopheles arabiensis (Diptera: Culcidae) in market-garden wells in urban Dakar Senegal, Journal of Medical Entomology, vol. 35 pp.948-955
Champely S, Guinand B, Thioulouse J, Clermidy A (1997)
Functional data analysis of curve asymmetry with application to the color pattern of Hydropsyche contubernalis head capsule, Biometrics, vol. 53 pp.294-305
Thioulouse J , Chessel D, Dolédec S, Olivier JM (1997)
ADE-4: a multivariate analysis and graphical display software, Statistics and Computing, vol. 7 pp.75-83
Perrière G, Lobry JR, Thioulouse J (1996)
Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences, Computer Applications in the Biosciences, vol. 12 pp.519-524
Perrière G, Thioulouse J (1996)
On-line tools for sequence retrieval and multivariate statistics in molecular biology, Computer Applications in the Biosciences, vol. 12 pp.63-69
Thioulouse J (1996)
Towards Better Graphics for Multivariate Analysis: the Interactive Factor Map, Computational Statistics & Data Analysis, vol. 11 pp.11-21
Thioulouse J, Chevenet F (1996)
NetMul a World-Wide Web user interface for multivariate analysis sofware, Computational Statistics & Data Analysis, vol. 21 pp.369-372
Thioulouse J, Chessel D, Champely S (1995)
Multivariate analysis of spatial patterns: a unified approach to local and global structures, Environmental and Ecological Statistics, vol. 2 pp.1-14
Thioulouse J, Lobry JR (1995)
Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package, Bioinformatics, vol. 11 pp.321-329
Cadet P, Thioulouse J, Albrecht A (1994)
Relationships between ferrisol properties and the structure of plant parasitic nematode communities on sugarcane in Martinique (French West Indies), Acta Oecologica, vol. 15 pp.767-780
Devillers J, Thioulouse J, Karcher W (1993)
Chemometrical evaluation of multispecies-multichemical data by means of graphical techniques combined with multivariate analyses, Ecotoxicology and environmental safety, vol. 26 pp.333-345
Thioulouse J, Royet JP, Ploye H, Houllier F (1993)
Evaluation of the Precision of Systematic Sampling : Nugget Effect and Covariogram Modelling, Journal of Microscopy, vol. 172 pp.249-256
Thioulouse J, Chessel D (1992)
A method for reciprocal scaling of species tolerance and sample diversity, Ecology, vol. 73 pp.670-680
Thioulouse J (1990)
MacMul and GraphMu :two Macintosh programs for the display and analysis of multivariate data, Computers and Geosciences UK, vol. 16 pp.1235-1240
Cadet P, Thioulouse J (1989)
Traitements nematicides et peuplement de nematodes parasites de la canne a sucre au Burkina Faso. I : Repousses, Revue de Nématologie, vol. 12 pp.35-44
Thioulouse J (1989)
Statistical analysis and graphical display of multivariate data on the Macintosh, Computer Applications in the Biosciences, vol. 5 pp.287-292
Thioulouse J (1987)
Space-Time Structure in a Winter Rape Pest Population Psylliodes chrysocephala (Col. chrysomelidae): methodological proposals and biological interpretations, Journal of Applied Ecology, vol. 24 pp.435-450
Thioulouse J, Chessel D (1987)
Les analyses multitableaux en ecologie factorielle. I : de la typologie d`etat a la typologie de fonctionnement par l`analyse triadique, Acta Oecologica Oecologia Generalis, vol. 8 pp.463-480
Thioulouse J, Houllier F, Onillon JC (1985)
Variables regionalisees et denombrement d`Insectes : cas unidimensionnel, Comptes Rendus de l`Académie des Sciences - Séries III - Sciences de la Vie, vol. 301 pp.423-428
Thioulouse J, Mathy B, Ploye H (1985)
Estimation d`un Volume a partir de Coupes Seriees : Sous-Echantillonnage Covariogramme Transitif et Calcul de Precision, Mikroskopie (Wien), vol. 42 pp.215-224
Thioulouse J, Debouzie D, Ballanger Y (1984)
Structures spatiales et temporelles des populations d`un ravageur du Colza (Psylliodes chrysocephala L. (Col. Chrysomelidae)) dans plusieurs parcelles de culture, Acta Oecologica Oecologia Applicata, vol. 5 pp.335-353
incollection :
Duponnois R, Hafidi M, Thioulouse J, Galiana A, Ouahmane L, Dreyfus B, Prin Y (2009)
Monitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas, article in: Microbial Strategies for Crop Improvement, Springer-Verlag Berlin, pp.443-450
Thioulouse J, Doledec S, Chessel D, Olivier JM (1995)
DE software: multivariate analysis and graphical display of environmental data, article in: , Software per l`ambiente, pp.57-62
Chessel D, Thioulouse J (1991)
Auto-Modelisation en Analyse des Donnees, article in: Modelisation confluent des Sciences, Editions du CNRS, pp.71-86
Devillers J, Thioulouse J, Domine D, Chastrette M, Karcher W (1991)
Multivariate Analysis of the Input and Output Data in the Fugacity Model Level I, article in: Applied Multivariate Analysis in SAR and Environmental Studies, Kluwer Academic Publishers, pp.281-345
Thioulouse J, Devillers J, Chessel D, Auda Y (1991)
Graphical Techniques for Multidimensional Data Analysis, article in: Applied Multivariate Analysis in SAR and Environmental Studies, Kluwer Academic Publishers, pp.153-205
Debouzie D, Thioulouse J (1986)
Statistics to find spatial and temporal structures in populations, article in: Pest control: operations and system analysis in fruit fly managment NATO ASI Series, Springer Verlag, pp.263-282
