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UMR CNRS 5558 - LBBE "Biométrie et Biologie Évolutive" UCB Lyon 1 - Bât. Grégor Mendel 43 bd du 11 novembre 1918 69622 VILLEURBANNE cedex
- Thèmes de recherche
Ma recherche est organisée autour de deux axes, mettant en jeu la phylogénie moléculaire, l’évolution moléculaire et la génomique comparée.
1- Phylogenomics of cellular processes and cellular systems
Il s’agit ici de reconstituer l’histoire évolutive des systèmes et processus cellulaires ayant joué un rôle clé lors de la diversification des trois domaines du vivant. L’objectif est de comprendre l’évolution des organismes du point de vue biologique.
2- Origin and diversification of the three domains of life
L’objectif ici est d’élucider les relations de parenté entre les organismes actuels et donc de retracer l’ordre dans lequel les groupes taxonomiques majeurs ont émergé lors de la diversification des trois domaines du vivant.
Ces deux approches sont complémentaires. En effet, comment comprendre les étapes qui ont conduit à la biodiversité actuelle, sans intégrer l’évolution des systèmes et processus biologiques ? Réciproquement, comment appréhender ces questions, sans disposer d’une phylogénie retraçant l’histoire évolutive des organismes ?
Bien que complémentaires ces deux approches sont souvent abordées de manière indépendante, alors que les informations obtenues au travers de l’analyse des systèmes et processus biologiques peuvent fournir de nouvelles données pour améliorer notre connaissance de la phylogénie des organismes et inversement, l’étude phylogénétique des données génomiques peut mettre en évidence des systèmes et processus biologiques d’intérêt pour comprendre l’évolution des organismes.
Pour en savoir plus : http://www.frangun.org
+Publications -Publications
article :
Aouad M, Borrel G, Brochier-Armanet C, Gribaldo S (2019)
Evolutionary placement of Methanonatronarchaeia, Nature Microbiology, vol. 4 pp.558-559.
Garcia PS, Jauffrit F, Grangeasse C, Brochier-Armanet C (2019)
GeneSpy a user-friendly and flexible genomic context visualizer, Bioinformatics, vol. 35 pp.329-331.
Pardoux R, Fievet A, Carreira C, Brochier-Armanet C, Valette O, Dermoun Z, Py B, Dolla A, Pauleta SR, Aubert C (2019)
The bacterial MrpORP is a novel Mrp/NBP35 protein involved in iron-sulfur biogenesis, Scientific reports, vol. 9 pp.712-712.
Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C (2018)
Extreme halophilic archaea derive from two distinct methanogen Class II lineages, Molecular phylogenetics and evolution, vol. 127 pp.46-54.
Carriel D, Simon Garcia P, Castelli F, Lamourette P, Fenaille F, Brochier-Armanet C, Elsen S, Gutsche I (2018)
A Novel Subfamily of Bacterial AAT-Fold Basic Amino Acid Decarboxylases and Functional Characterization of Its First Representative: Pseudomonas aeruginosa LdcA, Genome biology and evolution, vol. 10 pp.3058-3075.
Esteve C, Francescatto L, Tan PL, Bourchany A, De Leusse C, Marinier E, Blanchard A, Bourgeois P, Brochier-Armanet C, Bruel AL, Delarue A, Duffourd Y, Ecochard-Dugelay E, Hery G, Huet F, Gauchez P, Gonzales E, Guettier-Bouttier C, Komuta M, Lacoste C, Maudinas R, Mazodier K, Rimet Y, Rivière JB, Roquelaure B, Sigaudy S, Stephenne X, Thauvin-Robinet C, Thevenon J, Sarles J, Levy N, Badens C, Goulet O, Hugot J P, Katsanis N, Faivre L, Fabre A (2018)
Loss-of-Function Mutations in UNC45A Cause a Syndrome Associating Cholestasis Diarrhea Impaired Hearing and Bone Fragility, American journal of human genetics, vol. 102 pp.364-374.
Fadhlaoui K, Ben Hania W, Armougom F, Bartoli M, Fardeau ML, Erauso G, Brasseur G, Aubert C, Hamdi M, Brochier-Armanet C, Dolla A, Ollivier B (2018)
Obligate sugar oxidation in Mesotoga spp. phylum Thermotogae in the presence of either elemental sulfur or hydrogenotrophic sulfate-reducers as electron acceptor, Environmental microbiology, vol. 20 pp.281-292.
Zucchini L, Mercy C, Garcia PS, Cluzel C, Gueguen-Chaignon V, Galisson F, Freton C, Guiral S, Brochier-Armanet C, Gouet P, Grangeasse C (2018)
PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae, Nature microbiology, vol. 3 pp.197-209.
Adam PS, Borrel G, Brochier-Armanet C, Gribaldo S (2017)
The growing tree of Archaea: new perspectives on their diversity evolution and ecology, ISME Journal, vol. 11 pp.2407-2425.
Philippon H, Souvane A, Brochier-Armanet C, Perriere G (2017)
IsoSel: Protein Isoform Selector for phylogenetic reconstructions, PLoS One, vol. 12 pp.e0174250-e0174250.
Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP (2017)
The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity Virulence Potential and Niche Range of a Predominant Nosocomial Pathogen, Genome biology and evolution, vol. 9 pp.2292-2307.
Timm J, Brochier-Armanet C, Perard J, Zambelli B, Ollagnier-de-Choudens S, Ciurli S, Cavazza C (2017)
The CO dehydrogenase accessory protein CooT is a novel nickel-binding protein, Metallomics, vol. 9 pp.575-583.
Antunes LC, Poppleton D, Klingl A, Criscuolo A, Dupuy B, Brochier-Armanet C, Beloin C, Gribaldo S (2016)
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes, eLife, vol. 5 pp.e14589-e14589.
Attaiech L, Boughammoura A, Brochier-Armanet C, Allatif O, Peillard-Fiorente F, Edwards RA, Omar AR, MacMillan AM, Glover M, Charpentier X (2016)
Silencing of natural transformation by an RNA chaperone and a multitarget small RNA, Proceedings of the National Academy of Sciences of the United States of America, vol. 113 pp.8813-8818.
Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP (2016)
The changing view of eukaryogenesis - fossils cells lineages and how they all come together, Journal of Cell Science, vol. 129 pp.3695-3703.
Duprey A, Nasser W, Leonard S, Brochier-Armanet C, Reverchon S (2016)
Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya, FEBS journal, vol. 283 pp.4192-4207.
Fraune J, Brochier-Armanet C, Alsheimer M, Volff J N, Schucker K, Benavente R (2016)
Evolutionary history of the mammalian synaptonemal complex, Chromosoma, vol. 125 pp.355-60.
Garcia PS, Simorre JP, Brochier-Armanet C, Grangeasse C (2016)
Cell division of Streptococcus pneumoniae: think positive!, Current opinion in microbiology, vol. 34 pp.18-23.
Groussin M, Boussau B, Szollosi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V (2016)
Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated, Molecular Biology and Evolution, vol. 33 pp.305-10.
Jauffrit F, Penel S, Delmotte S, Rey C, De Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C (2016)
RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics, Molecular Biology and Evolution, vol. 33 pp.2170-2172.
Karaki L, Da Silva P, Rizk F, Chouabe C, Chantret N, Eyraud V, Gressent F, Sivignon C, Rahioui I, Kahn D, Brochier-Armanet C, Rahbe Y, Royer C (2016)
Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula, BMC plant biology, vol. 16 pp.63-63.
Thiaville JJ, Kellner SM, Yuan Y, Hutinet G, Thiaville PC, Jumpathong W, Mohapatra S, Brochier-Armanet C, Letarov AV, Hillebrand R, Malik CK, Rizzo CJ, Dedon PC, de Crécy-Lagard V (2016)
Novel genomic island modifies DNA with 7-deazaguanine derivatives, Proceedings of the National Academy of Sciences of the United States of America, vol. 113 pp.e1452-e1459.
Agrebi R, Wartel M, Brochier-Armanet C, Mignot T (2015)
An evolutionary link between capsular biogenesis and surface motility in bacteria, Nature Reviews Microbiology, vol. 13 pp.318-326.
Ben Hania W, Fadhlaoui K, Brochier-Armanet C, Persillon C, Postec A, Hamdi M, Dolla A, Ollivier B, Fardeau ML, Le Mer J, Erauso G (2015)
Draft genome sequence of Mesotoga strain PhosAC3 a mesophilic member of the bacterial order Thermotogales isolated from a digestor treating phosphogypsum in Tunisia, Standards in genomic sciences, vol. 10 pp.12-12.
Borland S, Oudart A, Prigent-Combaret C, Brochier-Armanet C, Wisniewski-Dye F (2015)
Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum, BMC Genomics, vol. 16 pp.833-833.
Freel KC, Krueger MC, Farasin J, Brochier-Armanet C, Barbe V, Andrès J, Cholley P-E, Dillies M-A, Jagla B, Koechler S, Leva Y, Magdelenat G, Plewniak F, Proux C, Coppée J-Y, Bertin PN, Heipieper HJ, Arsène-Ploetze F (2015)
Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas, PLoS One, vol. 10 pp.e0139011-e0139011.
Guzzo M, Agrebi R, Espinosa L, Baronian G, Molle V, Mauriello E M, Brochier-Armanet C, Mignot T (2015)
Evolution and Design Governing Signal Precision and Amplification in a Bacterial Chemosensory Pathway, PLoS genetics, vol. 11 pp.e1005460-e1005460.
Koechler S, Arsene-Ploetze F, Brochier-Armanet C, Goulhen-Chollet F, Heinrich-Salmeron A, Jost B, Lievremont D, Philipps M, Plewniak F, Bertin P N, Lett M C (2015)
Constitutive arsenite oxidase expression detected in arsenic-hypertolerant Pseudomonas xanthomarina S11, Research in microbiology, vol. 166 pp.205-14.
Petitjean C, Deschamps P, Lopez-Garcia P, Moreira D, Brochier-Armanet C (2015)
Extending the conserved phylogenetic core of archaea disentangles the evolution of the third domain of life, Molecular Biology and Evolution, vol. 32 pp.1242-54.
Philippon H, Brochier-Armanet C, Perriere G (2015)
Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns, BMC evolutionary biology, vol. 15 pp.226-226.
Raymann K, Brochier-Armanet C, Gribaldo S (2015)
The two-domain tree of life is linked to a new root for the Archaea, Proceedings of the National Academy of Sciences of The United States of America, vol. 112 pp.6670-6675.
Vinella D, Fischer F, Vorontsov E, Gallaud J, Malosse C, Michel V, Cavazza C, Robbe-Saule M, Richaud P, Chamot-Rooke J, Brochier-Armanet C, De Reuse H (2015)
Evolution of Helicobacter : Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization, PLoS Pathogens, vol. 11 pp.e1005312-e1005312.
Amouric A, Liebgott P P, Joseph M, Brochier-Armanet C, Lorquin J (2014)
Halomonas olivaria sp. nov. a moderately halophilic bacterium isolated from olive-processing effluents, International journal of systematic and evolutionary microbiology, vol. 64 pp.46-54.
Fraune J, Alsheimer M, Redolfi J, Brochier-Armanet C, Benavente R (2014)
Protein SYCP2 Is an Ancient Component of the Metazoan Synaptonemal Complex, Cytogenetic and genome research, vol. 144 pp.299-305.
Khelifi N, Amin Ali O, Roche P, Grossi V, Brochier-Armanet C, Valette O, Ollivier B, Dolla A, Hirschler-Rea A (2014)
Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus, ISME journal, vol. 8 pp.2153-66.
Lebrette H, Brochier-Armanet C, Zambelli B, de Reuse H, Borezee-Durant E, Ciurli S, Cavazza C (2014)
Promiscuous nickel import in human pathogens: structure thermodynamics and evolution of extracytoplasmic nickel-binding proteins, Structure, vol. 22 pp.1421-32.
Ramulu H G, Groussin M, Talla E, Planel R, Daubin V, Brochier-Armanet C (2014)
Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?, Molecular phylogenetics and evolution, vol. 75C pp.103-117.
Raymann K, Forterre P, Brochier-Armanet C, Gribaldo S (2014)
Global Phylogenomic Analysis Disentangles the Complex Evolutionary History of DNA Replication in Archaea, Genome Biology and Evolution, vol. 6 pp.192-212.
Rochette NC, Brochier-Armanet C, Gouy M (2014)
Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes, Molecular biology and evolution, vol. 31 pp.832-45.
Zallot R, Brochier-Armanet C, Gaston K W, Forouhar F, Limbach P A, Hunt J F, De Crecy-Lagard V (2014)
Plant animal and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family, ACS Chemical Biology, vol. 9 pp.1812-25.
Andres J, Arsene-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppee J Y, Dillies M A, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Medigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramirez-Bahena M H, Schenowitz C, Sismeiro O, Vallenet D, Santini J M, Bertin P N (2013)
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26, Genome Biology and Evolution, vol. 5 pp.934-53.
Ben Hania W, Postec A, Aullo T, Ranchou-Peyruse A, Erauso G, Brochier-Armanet C, Hamdi M, Ollivier B, Saint-Laurent S, Magot M, Fardeau ML (2013)
Mesotoga infera sp. nov. a mesophilic member of the order Thermotogales isolated from an underground gas storage aquifer, International Journal of Systematic and Evolutionary Microbiology, vol. 63 pp.3003-8.
Eme L, Reigstad LJ, Spang A, Lanzen A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C (2013)
Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota, Research in Microbiology, vol. 164 pp.425-38.
Fraune J, Brochier-Armanet C, Alsheimer M, Benavente R (2013)
Phylogenies of Central Element Proteins Reveal the Dynamic Evolutionary History of the Mammalian Synaptonemal Complex: Ancient and Recent Components, Genetics, vol. 195 pp.781-793.
Gribaldo S, Brochier-Armanet C (2013)
LUCA ancêtre de tous les êtres vivants, Les dossiers de la recherche, vol. 2 pp.29-31.
Brochier-Armanet C, Gribaldo S (2012)
Les défis de la systématique face au monde microbien, Biofutur, vol. 328 pp.49-52.
Brochier-Armanet C, Gribaldo S, Forterre P (2012)
Spotlight on the Thaumarchaeota, Isme Journal, vol. 6 pp.227-230.
De Crécy-Lagard V, Forouhar F, Brochier-Armanet C, Tong L, Hunt JF (2012)
Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage, Biology Direct, vol. 7 pp.1-13.
Gribaldo S, Brochier-Armanet C (2012)
Time for order in microbial systematics, Trends in Microbiology, vol. 20 pp.209-210.
Narasingarao P, Podell S, Ugalde J A, Brochier-Armanet C, B Emerson J, Brocks J J, Heidelberg K B, Banfield J F, Allen E E (2012)
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities, ISME Journal, vol. 6 pp.81-93.
Petitjean C, Moreira D, Lopez-Garcia P, Brochier-Armanet C (2012)
Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archea, BMC Evolutionary Biology, vol. 12 pp.226-226.
Py B, Gerez C, Angelini S, Planel R, Vinella D, Loiseau L, Talla E, Brochier-Armanet C, Garcia Serres R, Latour J M, Ollagnier-de Choudens S, Fontecave M, Barras F (2012)
Molecular organization biochemical function cellular role and evolution of NfuA an atypical Fe-S carrier, Molecular microbiology, vol. 86 pp.155-71.
Amouric A, Brochier-Armanet C, Johnson D B, Bonnefoy V, Hallberg K B (2011)
Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways, Microbiology, vol. 155 pp.111-122.
Auxilien S, Rasmussen A, Rose S, Brochier-Armanet C, Husson C, Fourmy D, Grosjean H, Douthwaite S (2011)
Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases, RNA, vol. 17 pp.45-53.
Ben Hania W, Ghodbane R, Postec A, Brochier-Armanet C, Hamdi M, Fardeau M-L, Ollivier B (2011)
Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales, Systematic and Applied Microbiology, vol. 34 pp.581-585.
Boileau C, Eme L, Brochier-Armanet C, Janicki A, Zhang C-C, Latifi A (2011)
A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120, New phytologist, vol. 191 pp.1108-1118.
Brochier-Armanet C, Deschamps P, Lopez-Garcia P, Zivanovic Y, Rodriguez-Valera F, Moreira D (2011)
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic Thaumarchaeota and Euryarchaeota, ISME, vol. 5 pp.1291-302.
Brochier-Armanet C, Forterre P, Gribaldo S (2011)
Phylogeny and Evolution of the Archaea: one Hundred Genomes Later, Current opinion in microbiology, vol. 14 pp.274-281.
Coumes-Florens S, Brochier-Armanet C, Guiseppi A, Denizot F, Foglino M (2011)
A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System, PLoS one, vol. 6 pp.e15951-e15951.
Denoeud F, Roussel, Noel B, Wawrzyniak I, Da Silva C, Diogon M, Viscogliosi E, Brochier-Armanet C, Couloux A, Poulain J, Segurens B, Anthouard V, Texier C, Blot N, Poirier P, Choo Ng G, Tan K S W, Artiguenave F, Jaillon O, Aury J-M, Delbac F, Wincker P, Vivarès C P, El Alaoui H (2011)
Genome sequence of the stramenopile Blastocystis a human anaerobic parasite, Genome Biology, vol. 12 pp.R29-R29.
Desmond E, Brochier-Armanet C, Forterre P, Gribaldo S (2011)
On the last common ancestor and early evolution of eukaryotes: Reconstructing the history of mitochondrial ribosomes, Research in Microbiology, vol. 162 pp.53-70.
Durand E, Alphonse S, Brochier-Armanet C, Ball G, Douzi B, Filloux A, Bernard C, Voulhoux R (2011)
The Assembly Mode of the Pseudopilus: a hallmark to distinguish a novel secretion system subtype, Journal of Biological Chemistry, vol. 286 pp.24407-24416.
Eme L, Trilles A, Moreira D, Brochier-Armanet C (2011)
The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes, BMC Evolutionary Biology, vol. 11 pp.923-33.
Gribaldo S, Forterre P, Brochier-Armanet C (2011)
Archaea and the tree of life, Research in microbiology, vol. 162 pp.1-4.
Heinrich-Salmeron A, Cordi A, Brochier-Armanet C, Halter D, Pagnout C, Abbaszadeh-Fard E, Montaut D, Seby F, Bertin P N, Bauda P, Arsène-Ploetze F (2011)
Unsuspected Diversity of Arsenite-Oxidizing Bacteria Revealed by a Widespread Distribution of the aoxB Gene in Prokaryotes, Applied and Environmental Microbiology, vol. 77 pp.4685-92.
Le Fourn C, Brasseur G, Brochier-Armanet C, Pieulle L, Brioukhanov A, Ollivier B, Dolla A (2011)
An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales, Environmental Microbiology, vol. 13 pp.2132-45.
Luciano J, Agrebi R, Le Gall AV, Wartel M, Fiegna F, Ducret A, Brochier-Armanet C, Mignot T (2011)
Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria, PLoS Genetics, vol. 7 pp.e1002268-e1002268.
Pompeo F, Luciano J, Brochier-Armanet C, Galinier A (2011)
The GTPase Function of YvcJ and Its Subcellular Relocalization Are Dependent on Growth Conditions in Bacillus subtilis, Journal of Molecular Microbiology and Biotechnology, vol. 20 pp.156-167.
Slyemi D, Moinier D, Brochier-Armanet C, Bonnefoy V, Johnson D B (2011)
Characteristics of a phylogenetically ambiguous arsenic-oxidizing Thiomonas sp. Thiomonas arsenitoxydans strain 3As(T) sp. nov., Archives of Microbiology, vol. 193 pp.439-449.
Trigui H, Masmoudi S, Brochier-Armanet C, Barani A, Grégori G, Denis M, Dukan S, Maalej S (2011)
Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis., Extremophiles, vol. 15 pp.347-358.
Trigui H, Masmoudi S, Brochier-Armanet C, Maalej S, Dukan S (2011)
Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia, International Journal of Microbiology, vol. 2011 pp.240191-240191.
Trigui H, Masmoudi S, Brochier-Armanet C, Maalej S, Dukan S (2011)
Survival of extremely and moderately halophilic isolates of Tunisian solar salterns after UV-B or oxidative stress, Canadian Journal of Microbiology, vol. 57 pp.923-33.
Arsène-Ploetze F, Koechler S, Marchal M, Coppée J-Y, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan C G, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin P N (2010)
Structure function and evolution of the Thiomonas spp. genome, PLoS Genetics, vol. 6 pp.e100859-e100859.
De Crécy-Lagard V, Brochier-Armanet C, Urbonavicius J, Fernandez B, Philipps G, Lyons B, Noma A, Alvarez S, Droogmans L, Armengaud J, Grosjean H (2010)
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea, Molecular Biology and Evolution, vol. 27 pp.2062-77.
Gribaldo S, Poole A, Daubin V, Forterre P, Brochier-Armanet C (2010)
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?, Nature Rewiews Microbiology, vol. 8 pp.743-752.
Salacha R, Kovacic F, Brochier-Armanet C, Wilhelm S, Tommassen J, Filloux A, Voulhoux R, Bleves S (2010)
The Pseudomonas aeruginosa patatin-like protein PlpD is the archetype of a novel Type V secretion system, Environmental Microbiology, vol. 12 pp.1498-512.
Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E, Streit W, Stahl D A, Wagner M, Schleper C (2010)
Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota, Trends in Microbiology, vol. 18 pp.331-340.
Walker C B, la Torre J R, Klotz M G, Urakawa H, Pinel N, Arp D J, Brochier-Armanet C, Chain P S, Chan P P, Gollabgir A, Hemp J, Hügler M, Karr E A, Könneke M, Shin M (2010)
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea, Proceedings of the National Academy of Sciences of The United States of America, vol. 107 pp.8818-23.
Brochier-Armanet C, Talla E, Gribaldo S (2009)
The multiple evolutionary histories of dioxygen reductases: implications for the origin and evolution of aerobic respiration, Molecular Biology and Evolution, vol. 26 pp.285-97.
Eme L, Moreira D, Talla E, Brochier-Armanet C (2009)
A complex cell division machinery was present in the last common ancestor of eukaryotes, PloS ONE, vol. 4 pp.968-982.
Forterre P, Gribaldo S, Brochier-Armanet C (2009)
Happy together: genomic insights into the unique Nanoarchaeum Ignicoccus association, Journal of Biology, vol. 8 pp.16-32.
Gribaldo S, Brochier C (2009)
Phylogeny of prokaryotes: does it exist and why should we care?, Res Microbiol, vol. 160 pp.513-21.
Gribaldo S, Talla E, Brochier-Armanet C (2009)
Evolution of the haem copper oxidases superfamily: a rooting tale, Trends in Biochemical Sciences, vol. 34 pp.375-381.
Guyon F, Brochier-Armanet C, Guénoche A (2009)
Comparison of alignment free string distances for complete genome phylogeny, Advances in Data Analysis and Classification, vol. 3 pp.95-108.
Oberto J, Breuil N, Hecker A, Farina F, Brochier-Armanet C, Culetto E, Forterre P (2009)
Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance, Nucleic Acids Research, vol. 37 pp.5343-52.
Vinella D, Brochier-Armanet C, Loiseau L, Talla E, Barras F (2009)
Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers, PLoS Genetics, vol. 5 pp.e1000497-e1000497.
Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P (2008)
Mesophilic crenarchaeota: proposal for a third archaeal phylum the Thaumarchaeota, Nature Reviews Microbiology, vol. 6 pp.245-252.
Brochier-Armanet C, Gribaldo S, Forterre P (2008)
DNA Topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya, Biol Direct, vol. 3 pp.49-52.
Elkins J G, Podar M, Graham D E, Makarova K S, Wolf Y, Randau L, Hedlund B P, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin E V, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter K O (2008)
A korarchaeal genome reveals insights into the evolution of the Archaea, Proc Natl Acad Sci USA, vol. 105 pp.8102-7.
Hingamp P, Brochier C, Talla E, Gautheret D, Thieffry D, Herrmann C (2008)
Metagenome Annotation Using a Distributed Grid of Undergraduate Students, PLOS Biology, vol. 6 pp.239-241.
Moreira D, Brochier-Armanet C (2008)
Giant viruses giant chimeras: The multiple evolutionary histories of Mimivirus genes, BMC Evol Biol, vol. 8 pp.259-287.
Urbonavicius J, Auxilien S, Walbott H, Trachana K, Golinelli-Pimpaneau B, Brochier-Armanet C, Grosjean H (2008)
Acquisition of a bacterial RumA-type tRNA(uracil-54 C5)methyltransferase by Archaea through an ancient horizontal gene transfer, Mol Microbiol, vol. 67 pp.323-335.
Brochier-Armanet C, Forterre P (2007)
Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers, Archaea, vol. 2 pp.83-93.
Chomont N, Hocini H, Gresenguet G, Brochier C, Bouhlal H, Andreoletti L, Becquart P, Charpentier C, de Dieu Longo J, Si-Mohamed A, Kazatchkine M D, Belec L (2007)
Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1, AIDS, vol. 21 pp.153-162.
De Crécy-Lagard V, Marck C, Brochier-Armanet C, Grosjean H (2007)
Comparative RNomics and modomics in mollicutes: prediction of gene function and evolutionary implications, IUBMB Life, vol. 59 pp.634-58.
Desmond E, Brochier-Armanet C, Gribaldo S (2007)
Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure, BMC Evol Biol, vol. 7 pp.53-70.
Hecker A, Leulliot N, Gadelle D, Graille M, Justome A, Dorlet P, Brochier C, Quevillon-Cheruel S, Le Cam E, van Tilbeurgh H, Forterre P (2007)
An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro, Nucleic Acids Research, vol. 35 pp.6042-51.
Urbonavicius J, Brochier-Armanet C, Skouloubris S, Myllykallio H, Grosjean H (2007)
In vitro detection of the enzymatic activity of folate-dependent tRNA(U54 C5)methyltransferase, Methods Enzymol, vol. 25 pp.103-19.
Gribaldo S, Brochier-Armanet C (2006)
The origin and evolution of Archaea: a state of the art, Philos Trans R Soc Lond B Biol Sci, vol. 361 pp.1007-22.
Bapteste E, Brochier C, Boucher Y (2005)
Higher-level classification of the Archaea: on methanogenesis and methanogens, Archaea, vol. 1 pp.353-63.
Bapteste E, Charlebois R L, Macleod D, Brochier C (2005)
The two tempos of nuclear pore complex evolution: highly adapting proteins in an ancient frozen structure, Genome Biology, vol. 6 pp.353-63.
Brochier C, Forterre P, Gribaldo S (2005)
An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences, BMC Evol Biol, vol. 5 pp.1-5.
Brochier C, Gribaldo S, Forterre P (2005)
Nanoarchaea: representatives of a novel archaeal phylum or fast-evolving euryarchaeal lineage related to Thermococcales?, Genome Biology, vol. 6 pp.1-5.
Bapteste E, Brochier C (2004)
On the conceptual difficulties in rooting the tree of life, Trends Microbiol, vol. 12 pp.9-13.
Brochier C, Forterre P, Gribaldo S (2004)
Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox, Genome Biology, vol. 5 pp.1-5.
Brochier C, Lopez-Garcia P, Moreira D (2004)
Horizontal gene transfer and archaeal origin of deoxyhypusine synthase homologous genes in bacteria, Gene, vol. 330 pp.169-76.
Lopez-Garcia P, Brochier C, Moreira D, Rodriguez-Valera F (2004)
Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers, Environ Microbiol, vol. 6 pp.19-34.
Brochier C, Bapteste E, Moreira D, Philippe H (2002)
Eubacterial phylogeny based on translational apparatus proteins, Trends Genet, vol. 18 pp.1-5.
Brochier C, Philippe H (2002)
A non-hyperthermophilic ancestor for Bacteria, Nature, vol. 417 pp.50-53.
Forterre P, Brochier C, Philippe H (2002)
Evolution of the Archaea, Theor Popul Biol, vol. 61 pp.409-422.
Matte-Tailliez O, Brochier C, Forterre P, Philippe H (2002)
Archaeal phylogeny based on ribosomal proteins, Mol Biol Evol, vol. 19 pp.631-639.
Brochier C, Philippe H, Moreira D (2000)
The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome, Trends Genet, vol. 16 pp.529-33.
book :
 | Perrière G, Brochier-Armanet C (2010) Concepts et méthodes en phylogénie moléculaire, Springer, 2010 |
inbook :
Bertrand J C, Brochier C, Gouy M, Westall F (2012)
Pendant trois milliards d`années les micro-organismes sont les seuls habitants de la terre
in: Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés, , pp.81-117.
Brochier-Armanet C, Moreira D (2012)
Transferts horizontaux de gènes dans les écosystèmes microbiens
in: Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés, , pp.471-512.
Caumette P, Brochier C, Normand P (2012)
Taxonomie et phylogénie des procaryotes
in: Ecologie Microbienne : Microbiologie des Milieux Naturels et Anthropisés, , pp.159-202.
Brochier-Armanet C (2010)
Minimal cell: the biologist point of view
in: Origin of life, , pp.26-46.
Brochier-Armanet C (2008)
Origine et évolution des microorganismes
in: , , pp.529-33.
Gribaldo S, Forterre P, Brochier-Armanet C (2008)
Les Archaea : évolution et diversité du troisième domaine du vivant
in: , , pp.137-145.
Forterre P, Gribaldo S, Brochier-Armanet C (2006)
Natural history of the archaeal domain
in: , , pp.16-32.
Forterre P, Gribaldo S, Brochier C (2005)
LUCA: the last universal common ancestor
in: , , pp.860-865.
Brochier C, Philippe H (2000)
Phylogénies moléculaires et génomes
in: , , pp.50-53.
