Quantitative and Evolutionary Ecology of Communities Group
Thioulouse Jean
Directeur de recherche
CNRS
Mendel Building, 1st floor. Office 11.048
Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/
Reproducible research : A series of paper with graphs and computations reproducibility:
https://jthome.thioulouse.fr/Reproducible_Research/
https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/
Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO
ORCID ID: https://orcid.org/0000-0001-7664-05980
IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse
ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1
Evol. Biol. 2021 paper reproducibility:
Overcoming the Spurious Groups Problem in Between-Group PCA
Research activity
My research activities are centred around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.
The ade4 package for R :ade4
The adegraphics package for R :adegraphics
The ade4TkGUI package for R :ade4TkGUI
Publications
Display of 61 to 90 publications on 153 in total
Le projet ECOMIC-RMQS ou comment faire de la microbiogéographie à l'échelle de la France
Journées d'animations scientifiques des ORE ACBB . : n.p.
Conference paper
see the publicationArbuscular mycorrhizas and ectomycorrhizas of Uapaca bojeri L. (Euphorbiaceae): sporophore diversity patterns of root colonization and effects on seedling growth and soil microbial catabolic diversity
Mycorrhiza . 17 : 195-208
Journal article
see the publicationSoil functional diversity and P solubilization from rock phosphate after inoculation whith native or allochtonous arbuscular mycorrhizal fungi
Forest Ecology and Management . 241 ( 1-3 ) : 200-208
Journal article
see the publicationInfluence du type de sol et du mode d’occupation des sols sur la quantité d’ADN extraite et la densité des communautés bactériennes indigènes
AFEM (Association Francophone d'Ecologie Microbienne) . : n.p.
Poster
see the publicationMicrobiogéographie à l'échelle du territoire national
AFEM (Association Francophone d'Ecologie Microbienne) . : n.p.
Conference paper
see the publicationBiological control of Striga hermontica by Cubiterms mound powder amendment in sorghum culture
Applied Soil Ecology . 37 ( 3 ) : 175-183
Journal article
see the publicationImprovement of Cupressus atlantica Gaussen growth by inoculation with native arbuscular mycorrhizal fungi
Journal of Applied Ecology . 103 : 683-690
Journal article
see the publicationDetection of recombinant human erythropoietin in urine for doping analysis: interpretation of isoelectric profiles by discriminant analysis
Electrophoresis . 28 ( 12 ) : 1875-1881
Journal article
see the publicationInteractive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages
Journal of Statistical Software . 22 : 1-14
Journal article
see the publicationArbuscular mycorrhizal symbiosis can counterbalance the negative influence of the exotic tree species Eucalyptus camaldulensis on the structure and functioning of soil microbial communities in a sahelian soil
FEMS Microbiology Ecology . 62 ( 1 ) : 32-44
Journal article
see the publicationThe Ectomycorrhizosphere Effect Influences Functional Diversity of Soil Microflora
International Journal of Soil Science . 1 : 8-19
Journal article
see the publicationDevelopment of cellular immune responses to Plasmodium falciparum blood stage antigens from birth to 36 months of age in Cameroon
Acta Tropica . 98 : 261-269
Journal article
see the publicationPotential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
Applied and Environmental Microbiology . 72 ( 6 ) : 4302-4312
DOI: 10.1128/AEM.02686-05
Journal article
see the publicationBiological effects of native and exotic plant residues on plant growth microbial biomass and N availability under controlled conditions
European Journal of Soil Biology . 42 : 238-246
Journal article
see the publicationLitter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates
FEMS Microbiology Ecology . 56 : 292-303
Journal article
see the publicationA multivariate approach to integrating Datasets using made4 and ade4
R News . -- : 1-15
Journal article
see the publicationDisplacement of an herbaceous plant species community by mycorrhizal and non-mycorrhizal Gmelina arborea, an exotic tree, grown in a microcosm experiment
Mycorrhiza . 16 ( 2 ) : 125-132
Journal article
see the publicationFluorescent pseudomonads occuring in Macrotermes subhyalinus mound structures decrease Cd toxicity and improve its accumulation in sorghum plants
Science of the Total Environment . 370 : 391-400
Journal article
see the publicationLavandula species as accompanying plants in Cupressus replanting strategies : Effect on plant growth mycorrhizal soil infectivity and soil microbial catabolic diversity
Applied Soil Ecology . -- : 190-199
Journal article
see the publicationIdentification of Genomic Species in Agrobacterium Biovar 1 by AFLP Genomic Markers
Applied and Environmental Microbiology . 72 ( 11 ) : 7123-7131
DOI: 10.1128/AEM.00018-06
Journal article
see the publicationPotential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities
Applied and Environmental Microbiology . 72 ( 6 ) : 4302-4312
DOI: 10.1128/AEM.02686-05
Journal article
see the publicationLavendula species as accompanying plants in Cupressus replanting strategies: Effect on plant growth, mycorrhizal soil infectivity and soil microbial catabolic diversity
Applied Soil Ecology . 34 ( 2-3 ) : 190-199
Journal article
see the publicationRelationships between plant-parasitic nematode community fallow duration and soil factors in the Sudano-Sahelian area of Senegal
Agriculture, Ecosystems & Environment . 108 : 302-317
Journal article
see the publicationThe mycorrhizal fungus Glomus intraradices and rock phosphate amendment influence plant growth and microbial activity in the rhizosphere of Acacia holosericea
Soil Biology and Biochemistry . 37 : 1460-1468
Journal article
see the publicationSoil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth dependent
Microbial ecology . 50 : 350-359
Journal article
see the publicationOnline synonymous codon usage analyses with the ade4 and seqinR packages
Bioinformatics . 21 : 545-547
Journal article
see the publicationFunctional diversity of soil microbial community, rock phosphate dissolution and growth of Acacia seyal as influenced by grass-litter and soil-feeding termite nest structure amendments
Geoderma . 124 : 349-361
Journal article
see the publicationMADE4: an R package for multivariate analysis of gene expression data
Bioinformatics . 21 : 2789-2790
Journal article
see the publicationSimultaneous analysis of a sequence of paired ecological tables with the STATICO method
Ecology . 85 : 272-283
Journal article
see the publication