Kafer Jos

Trait-dependent diversification in angiosperms: Patterns, models and data

Andrew J. Helmstetter, Rosana Zenil-Ferguson, Hervé Sauquet, Sarah P Otto, Marcos Méndez, Mario Vallejo-Marín...

Ecology Letters . 26 : 640-657

DOI: 10.1111/ele.14170

2023

Journal article

see the publication

Pulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling

Andrew J. Helmstetter, Sylvain Glémin, Jos Käfer, Rosana Zenil-Ferguson, Hervé Sauquet, Hugo J de Boer...

Systematic Biology . 71 ( 3 ) : 758-773

DOI: 10.1093/sysbio/syab083

2022

Journal article

see the publication

Labile sex expression in angiosperm species with sex chromosomes

Jos Käfer, Marcos Méndez, Sylvain Mousset

Philosophical Transactions of the Royal Society B: Biological Sciences . 377 ( 1850 )

DOI: 10.1098/rstb.2021.0216

2022

Journal article

see the publication

How sex chromosomes get trapped into nonrecombination

Jos Käfer

Plos Biology . 20 ( 7 ) : e3001718

DOI: 10.1371/journal.pbio.3001718

2022

Journal article

see the publication

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

Jos Käfer, Adam Bewick, Amélie Andres‐robin, Garance Lapetoule, Alex Harkess, José Caïus...

New Phytologist . 233 : 1636-1642

DOI: 10.1111/nph.17662

2022

Journal article

see the publication

Male differentiation in the marine Copepod Oithona nana reveals the development of a new nervous ganglion and Lin12-Notch-repeat protein-associated proteolysis

Kevin Sugier, Romuald Laso-Jadart, Benoît Vacherie, Jos Käfer, Laurie Bertrand, Karine Labadie...

Biology . 10 ( 7 ) : 657

DOI: 10.3390/biology10070657

2021

Journal article

see the publication

Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes

Djivan Prentout, Natasa Stajner, Andreja Cerenak, Theo Tricou, Celine Brochier-Armanet, Jernej Jakse...

New Phytologist . 231 ( 4 ) : 1599-1611

DOI: 10.1111/nph.17456

2021

Journal article

see the publication

Detecting sex-linked genes using genotyped individuals sampled in natural populations

Jos Käfer, Nicolas Lartillot, Gabriel a B Marais, Franck Picard

Genetics . 218 ( 2 )

DOI: 10.1093/genetics/iyab053

2021

Journal article

see the publication

An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa

Djivan Prentout, Olga Razumova, Benedicte Rhone, Hélène Badouin, Hélène Henri, Cong Feng...

Genome Research . 30 ( 2 ) : 164-172

DOI: 10.1101/gr.251207.119

2020

Journal article

see the publication

Detecting sex-linked genes using genotyped individuals sampled in natural populations

Jos Käfer, Nicolas Lartillot, Gabriel Marais, Franck Picard

DOI: 10.1101/2020.01.31.928291

2020

Preprint

see the publication

The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

Hélène E Badouin, Amandine Velt, François Gindraud, Timothée Flutre, Vincent Dumas, Sonia Vautrin...

Genome Biology . 21 ( 1 ) : 223

DOI: 10.1186/s13059-020-02131-y

2020

Journal article

see the publication

Homme/femme, mâle/femelle : la détermination du sexe dans l’espèce humaine et le reste du vivant

Gabriel Marais, Jos Käfer

Sexe & genre: De la biologie à la sociologie .

2019

Book chapter

see the publication

Progress and Prospects in Gender Visibility at SMBE Annual Meetings

Jos Käfer, Andrea Betancourt, Avelyne S. Villain, Marie Fernandez, Clémentine Vignal, Gabriel Marais...

Genome Biology and Evolution . 10 ( 3 ) : 901-908

DOI: 10.1093/gbe/evy056

2018

Journal article

see the publication

On the rarity of dioecy in flowering plants

Jos Käfer, Gabriel Marais, Jr. Pannell

Molecular Ecology . 26 : 1225-1241

DOI: 10.1111/mec.14020

2017

Journal article

see the publication

SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms

A. Muyle, Jos Käfer, N. Zemp, S. Mousset, Franck Picard, Gabriel Marais

Genome Biology and Evolution . 8 : 2530-2543

DOI: 10.1093/gbe/evw172

2016

Journal article

see the publication

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

Nicolas Blavet, Hana Blavet, Aline Muyle, Jos Käfer, Radim Cegan, Clothilde Deschamps...

BMC Genomics . 16 : 546

DOI: 10.1186/s12864-015-1698-7

2015

Journal article

see the publication

Statistical mechanics of two-dimensional shuffled foams: Geometry-topology correlation in small or large disorder limits

M. Durand, Andrew M. Kraynik, F. Van Swol, Jos Käfer, C. Quilliet, S. Cox...

Physical Review E . 89 : 062309

DOI: 10.1103/PhysRevE.89.062309

2014

Journal article

see the publication

Standard Sister Clade Comparison Fails when Testing Derived Character States

Jos Käfer, S. Mousset

Systematic Biology . 63 ( 4 ) : 601-609

DOI: 10.1093/sysbio/syu024

2014

Journal article

see the publication

An angiosperm-wide analysis of the gynodioecy-dioecy pathway.

Mathilde Dufaÿ, P. Champelovier, J Käfer, Jean-Pierre Henry, Sylvain Mousset, Gabriel A.B. Marais

Annals of Botany . 114 : 539-548

DOI: 10.1093/aob/mcu134

2014

Journal article

see the publication

Dioecy is associated with higher diversification rates in flowering plants

Jos Käfer, Hugo J de Boer, Sylvain Mousset, Anneleen Kool, Mathilde Dufaÿ, Gabriel A.B. Marais

Journal of Evolutionary Biology . 27 : 1478-1490

DOI: 10.1111/jeb.12385

2014

Journal article

see the publication

Patterns of molecular evolution in dioecious and non-dioecious Silene

J. Kafer, M. Talianova, T. Bigot, E. Michu, L. Guéguen, A. Widmer...

Journal of Evolutionary Biology . 26 : 335--46

DOI: 10.1111/jeb.12052

2013

Journal article

see the publication

Multiple Nuclear Gene Phylogenetic Analysis of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene

Gabriel Marais, A. Forrest, E. Kamau, Jos Käfer, Vincent Daubin, D. Charlesworth

PLoS ONE . 6 : e21915

DOI: 10.1371/journal.pone.0021915

2011

Journal article

see the publication

Statistical Mechanics of Two-Dimensional Shuffled Foams: Prediction of the Correlation between Geometry and Topology

M. Durand, Jos Käfer, C. Quilliet, S. Cox, S. Ataei-Talebi, F. Graner

Physical Review Letters . 107 : 1-5

2011

Journal article

see the publication

Single cells spreading on a protein lattice adopt an energy minimizing shape

Benoit Vianay, Jos Käfer, Emmanuelle Planus, Marc R. Block, François Graner, Hervé Guillou

Physical Review Letters . 105 ( 12 ) : 128101

DOI: 10.1103/PhysRevLett.105.128101

2010

Journal article

see the publication

The role of fluctuations and stress on the effective viscosity of cell aggregates.

Philippe Marmottant, Abbas Mgharbel, Jos Käfer, Benjamin Audren, Jean-Paul Rieu, Jean-Claude Vial...

Proceedings of the National Academy of Sciences of the United States of America . 106 ( 41 ) : 17271-5

DOI: 10.1073/pnas.0902085106

2009

Journal article

see the publication

From cells to tissues: physical modelling of the collective behaviour of embryonic cells

Jos Käfer

2008

Thesis

see the publication

Topological and geometrical disorder correlate robustly in two-dimensional foams

Catherine Quilliet, Shirin Ataei Talebi, David Rabaud, Jos Kaefer, Simon Cox, François Graner

2008

Preprint

see the publication

Publications

Trait-dependent diversification in angiosperms: Patterns, models and data

Pulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling

Labile sex expression in angiosperm species with sex chromosomes

How sex chromosomes get trapped into nonrecombination

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

Male differentiation in the marine Copepod Oithona nana reveals the development of a new nervous ganglion and Lin12-Notch-repeat protein-associated proteolysis

Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes

Detecting sex-linked genes using genotyped individuals sampled in natural populations

An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa

Detecting sex-linked genes using genotyped individuals sampled in natural populations

The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

Homme/femme, mâle/femelle : la détermination du sexe dans l’espèce humaine et le reste du vivant

Progress and Prospects in Gender Visibility at SMBE Annual Meetings

On the rarity of dioecy in flowering plants

SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

Statistical mechanics of two-dimensional shuffled foams: Geometry-topology correlation in small or large disorder limits

Standard Sister Clade Comparison Fails when Testing Derived Character States

An angiosperm-wide analysis of the gynodioecy-dioecy pathway.

Dioecy is associated with higher diversification rates in flowering plants

Patterns of molecular evolution in dioecious and non-dioecious Silene

Multiple Nuclear Gene Phylogenetic Analysis of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene

Statistical Mechanics of Two-Dimensional Shuffled Foams: Prediction of the Correlation between Geometry and Topology

Single cells spreading on a protein lattice adopt an energy minimizing shape

The role of fluctuations and stress on the effective viscosity of cell aggregates.

From cells to tissues: physical modelling of the collective behaviour of embryonic cells

Topological and geometrical disorder correlate robustly in two-dimensional foams