Pôles techniques

Does body growth impair immune function in a large herbivore?

Louise Cheynel, Frédéric Douhard, Emmanuelle Gilot-Fromont, Benjamin Rey, François Débias, Sylvia Pardonnet...

Oecologia . 189 ( 1 ) : 55-68

DOI: 10.1007/s00442-018-4310-4

2019

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Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Christophe Plantamp, Hélène Henri, Thibault Andrieux, Corinne Régis, Gladys Mialdea, Stéphane Dray...

Journal of Experimental Biology . 222 : jeb199398

DOI: 10.1242/jeb.199398

2019

Article dans une revue

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Nine Quick Tips for Analyzing Network Data

Vincent Miele, Stephane S. Robin, Catherine Matias, Stéphane Dray

PLoS Computational Biology . 15 ( 12 ) : e1007434

DOI: 10.1371/journal.pcbi.1007434

2019

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Non-trophic interactions strengthen the diversity-functioning relationship in an ecological bioenergetic network model

Vincent Miele, Christian Guill, Rodrigo Ramos-Jiliberto, Sonia Kéfi

PLoS Computational Biology . 15 ( 8 ) : e1007269

DOI: 10.1371/journal.pcbi.1007269

2019

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Diversity indices for ecological networks: a unifying framework using Hill numbers

Marc Ohlmann, Vincent Miele, Stéphane Dray, Loic Chalmandrier, Louise O’connor, Wilfried Thuiller

Ecology Letters . 22 ( 4 ) : 737-747

DOI: 10.1111/ele.13221

2019

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Evolution of Hepatitis B Virus Receptor NTCP Reveals Differential Pathogenicities and Species Specificities of Hepadnaviruses in Primates, Rodents, and Bats

Stéphanie Jacquet, Jean-Baptiste Pons, Ariel de Bernardo, Barthélémy Ngoubangoye, Cosset François-Loïc, Corinne Régis...

Journal of Virology . 93 ( 5 )

DOI: 10.1128/JVI.01738-18

2019

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Pollen limitation as a main driver of fruiting dynamics in oak populations

Marie-Claude Bel-Venner, David Fouchet, Aurélie Siberchicot, Vincent Boulanger, Thomas Caignard, Michel Thibaudon...

Ecology Letters . 22 ( 1 ) : 98-107

DOI: 10.1111/ele.13171

2019

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Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

Marie Fablet, Angelo Jacquet, Rita Rebollo, Annabelle A. Haudry, Carine Rey, Judit Salces-Ortiz...

G3 . 9 ( 3 ) : 855-865

DOI: 10.1534/g3.118.200789

2019

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CAARS: comparative assembly and annotation of RNA-Seq data

Carine Rey, Philippe Veber, Bastien Boussau, Marie Sémon

Bioinformatics . 35 ( 13 ) : 2199-2207

DOI: 10.1093/bioinformatics/bty903

2019

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Detecting adaptive convergent amino acid evolution

Carine Rey, Vincent Lanore, Philippe Veber, Laurent Guéguen, Nicolas Lartillot, Marie Sémon...

Philosophical Transactions of the Royal Society B: Biological Sciences . 374 ( 1777 ) : 1-11

DOI: 10.1098/rstb.2018.0234

2019

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The neutrophil to lymphocyte ratio indexes individual variation in the behavioural stress response of wild roe deer across fluctuating environmental conditions

Jeffrey Carbillet, Benjamin Rey, Typhaine Lavabre, Yannick Chaval, Joel Merlet, Francois Débias...

Behavioral Ecology and Sociobiology . 73 ( 11 ) : 1-13

DOI: 10.1007/s00265-019-2755-z

2019

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The ground plot counting method: A valid and reliable assessment tool for quantifying seed production in temperate oak forests?

Laura Touzot, Marie-Claude Bel-Venner, Marlène Gamelon, Stefano Focardi, Vincent Boulanger, Francois Débias...

Forest Ecology and Management . 430 : 143-149

DOI: 10.1016/j.foreco.2018.07.061

2018

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Stress levels of dominants reflect underlying conflicts with subordinates in a cooperatively breeding species.

Aurélie Cohas, Benjamin Rey, Valentine Federico, Corinne Regis, Sophie Lardy, Coraline Bichet

Behavioral Ecology and Sociobiology . 72 ( 4 ) : 72

DOI: 10.1007/s00265-018-2484-8

2018

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The influence of early‐life allocation to antlers on male performance during adulthood: Evidence from contrasted populations of a large herbivore

Jean-François Lemaître Lemaître, Louise Cheynel, Frédéric Douhard, Gilles Bourgoin, François Débias, Hubert Ferté...

Journal of Animal Ecology . 87 ( 4 ) : 921-932

DOI: 10.1111/1365-2656.12833

2018

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Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

Ondine Filippi-Codaccioni, Marie-Pauline Beugin, Damien de Vienne, Elodie Portanier, David Fouchet, Cécile Kaerle...

BMC Evolutionary Biology . 18 ( 1 )

DOI: 10.1186/s12862-018-1289-8

2018

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Coexistence de deux espèces cryptiques de chauves-souris en Guyane française : apprentissages à partir de la génétique de l’acoustique et de l’écologie

Ondine Filippi-Codaccioni, Marie-Pauline Beugin, Damien M. de Vienne, Elodie Portanier, David Fouchet, Cécile Kaerle...

Plume de Naturalistes . 2 : 169-190

2018

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Gearing up to handle the mosaic nature of life in the quest for orthologs

Kristoffer Forslund, Cécile Pereira, Salvador Capella-Gutiérrez, Alan Sousa da Silva, Adrian M Altenhoff, Jaime Huerta-Cepas...

Bioinformatics . 34 ( 2 ) : 323-329

DOI: 10.1093/bioinformatics/btx542

2018

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Abundance of Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) and its parasitoids on vegetables and cassava plants in Burkina Faso (West Africa)

Rahim Romba, Olivier Gnankine, Samuel Fogné Drabo, Fidèle Tiendrébéogo, Hélène Henri, Laurence Mouton...

Ecology and Evolution . 8 ( 12 ) : 6091-6103

DOI: 10.1002/ece3.4078

2018

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An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster

Bianca Menezes, Judit Salces-Ortiz, Héloise Muller, Nelly Burlet, Sonia Martinez, Marie Fablet...

Journal of Experimental Biology . 221 ( 23 ) : jeb186254

DOI: 10.1242/jeb.186254

2018

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Time course of liver mitochondrial function and intrinsic changes in oxidative phosphorylation in a rat model of sepsis

Pierre Eyenga, Damien Roussel, Jérome Morel, Benjamin Rey, Caroline Romestaing, Virginie Gueguen-Chaignon...

INTENSIVE CARE MEDICINE EXPERIMENTAL . 6 ( 31 ) : 1-17

DOI: 10.1186/s40635-018-0197-y

2018

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Females pay the oxidative cost of dominance in a highly social bird.

Liliana R. Silva, Sophie Lardy, André C. Ferreira, Benjamin Rey, Claire Doutrelant, Rita Covas

Animal Behaviour . 144 : 135-146

DOI: 10.1016/j.anbehav.2018.08.006

2018

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A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Deborah Di Giovanni, D. Lepetit, Matthieu Boulesteix, Marc Ravallec, Julien Varaldi

2018

Pré-publication

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Deciphering the behaviour manipulation imposed by a virus on its parasitoid host: insights from a dual transcriptomic approach

Julien Varaldi, D. Lepetit

Parasitology .

2018

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DRomics: A Turnkey Tool to Support the Use of the Dose–Response Framework for Omics Data in Ecological Risk Assessment

Floriane Larras, Elise Billoir, Vincent Baillard, Aurélie Siberchicot, Stefan Scholz, Tesfaye Wubet...

Environmental Science and Technology . 52 ( 24 ) : 14461-14468

DOI: 10.1021/acs.est.8b04752

2018

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Multivariate Analysis of Ecological Data with ade4

Jean Thioulouse, Stéphane Dray, Anne-Béatrice Dufour, Aurélie Siberchicot, Thibaut Jombart, Sandrine Pavoine

DOI: 10.1007/978-1-4939-8850-1

2018

Ouvrage

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Maternal reproductive senescence shapes the fitness consequences of the parental age difference in ruffed lemurs

Morgane Tidière, Xavier Thevenot, Adamantia Deligiannopoulou, Guillaume Douay, Mylisa Whipple, Aurélie Siberchicot...

Proceedings of the Royal Society B: Biological Sciences . 285 ( 1886 ) : 20181479

DOI: 10.1098/rspb.2018.1479

2018

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MOSAIC : une plate-forme web pour l’analyse statistique des données d’écotoxicologie. Fiche Thématique N°13

Sandrine Charles, Virgile Baudrot, Philippe Veber

: 4 p.

2018

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Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae

Vincent Raquin, Hélène Henri, Marine Vallat, François Leulier, Patricia Gibert, Natacha Kremer

Ecology and Evolution . 8 ( 20 ) : 10067 - 10074

DOI: 10.1002/ece3.4453

2018

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Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis

Natacha Kremer, Eric Koch, Adil El Filali, Lawrence Zhou, Elizabeth Heath-Heckman, Edward Ruby...

mSystems . 3 ( 5 )

DOI: 10.1128/mSystems.00165-18

2018

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Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Carlos Vargas-Chavez, Nicolas Parisot, C. Goubert, Patrice Baa-Puyoulet, Severine Balmand, M. Boulesteix...

VI Meeting of the Spanish Society for Evolutionary Biology (SESBE) .

2018

Poster

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Pôles techniques

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Publications

Does body growth impair immune function in a large herbivore?

Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Nine Quick Tips for Analyzing Network Data

Non-trophic interactions strengthen the diversity-functioning relationship in an ecological bioenergetic network model

Diversity indices for ecological networks: a unifying framework using Hill numbers

Evolution of Hepatitis B Virus Receptor NTCP Reveals Differential Pathogenicities and Species Specificities of Hepadnaviruses in Primates, Rodents, and Bats

Pollen limitation as a main driver of fruiting dynamics in oak populations

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

CAARS: comparative assembly and annotation of RNA-Seq data

Detecting adaptive convergent amino acid evolution

The neutrophil to lymphocyte ratio indexes individual variation in the behavioural stress response of wild roe deer across fluctuating environmental conditions

The ground plot counting method: A valid and reliable assessment tool for quantifying seed production in temperate oak forests?

Stress levels of dominants reflect underlying conflicts with subordinates in a cooperatively breeding species.

The influence of early‐life allocation to antlers on male performance during adulthood: Evidence from contrasted populations of a large herbivore

Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

Coexistence de deux espèces cryptiques de chauves-souris en Guyane française : apprentissages à partir de la génétique de l’acoustique et de l’écologie

Gearing up to handle the mosaic nature of life in the quest for orthologs

Abundance of Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) and its parasitoids on vegetables and cassava plants in Burkina Faso (West Africa)

An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster

Time course of liver mitochondrial function and intrinsic changes in oxidative phosphorylation in a rat model of sepsis

Females pay the oxidative cost of dominance in a highly social bird.

A behavior-manipulating virus relative as a source of adaptive genes for parasitoid wasps

Deciphering the behaviour manipulation imposed by a virus on its parasitoid host: insights from a dual transcriptomic approach

DRomics: A Turnkey Tool to Support the Use of the Dose–Response Framework for Omics Data in Ecological Risk Assessment

Multivariate Analysis of Ecological Data with ade4

Maternal reproductive senescence shapes the fitness consequences of the parental age difference in ruffed lemurs

MOSAIC : une plate-forme web pour l’analyse statistique des données d’écotoxicologie. Fiche Thématique N°13

Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae

Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis