Pôles techniques

Complication-related removal of totally implantable venous access port systems: Does the interval between placement and first use and the neutropenia-inducing potential of chemotherapy regimens influence their incidence? A four-year prospective study of 4

A. Kakkos, L. Bresson, D. Hudry, S. Cousin, C. Lervat, E. Bogart...

EJSO - European Journal of Surgical Oncology . 43 ( 4 ) : 689-695

DOI: 10.1016/j.ejso.2016.10.020

2017

Article dans une revue

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Uncoupling effect of palmitate is exacerbated in skeletal muscle mitochondria of sea-acclimatized king penguins (Aptenodytes patagonicus)

Benjamin Rey, Claude Duchamp, Damien Roussel

Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology . 211 : 56-60

DOI: 10.1016/j.cbpa.2017.06.009

2017

Article dans une revue

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High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Clément Goubert, Hélène Henri, Guillaume Minard, Claire Valiente Moro, Patrick Mavingui, Cristina Vieira...

Molecular Ecology . 26 ( 15 ) : 1-14

DOI: 10.1111/mec.14184

2017

Article dans une revue

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Maternal age affects offspring nutrient dynamics

Doriane Muller, David Giron, Emmanuel Desouhant, Benjamin Rey, Jérôme Casas, Nicolas Lefrique...

Journal of Insect Physiology . 101 : 123 - 131

DOI: 10.1016/j.jinsphys.2017.07.011

2017

Article dans une revue

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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Helene Lopez-Maestre, Camille Marchet, Vincent Miele...

Algorithms for Molecular Biology . 12 ( 1 ) : 2

DOI: 10.1186/s13015-017-0091-2

2017

Article dans une revue

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Statistical clustering of temporal networks through a dynamic stochastic block model

Catherine Matias, Vincent Miele

Journal of the Royal Statistical Society: Series B . 79 ( 4 ) : 1119–1141

DOI: 10.1111/rssb.12200

2017

Article dans une revue

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Revealing the hidden structure of dynamic ecological networks

Vincent Miele, Catherine Matias

Royal Society Open Science . 4 : 170251

DOI: 10.1098/rsos.170251

2017

Article dans une revue

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Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Veber

Environmental Science and Technology . 51 : 8202-8203

DOI: 10.1021/acs.est.7b02548

2017

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Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Ruiz, P. Veber

Environmental Science and Technology . 51 : 4038-4045

DOI: 10.1021/acs.est.6b05326

2017

Article dans une revue

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Ecological networks to unravel the routes to horizontal transposon transfers

Samuel Venner, Vincent Miele, Christophe Terzian, Christian Biemont, Vincent Daubin, Cedric Feschotte...

PLoS Biology . 15 ( 2 ) : np

DOI: 10.1371/journal.pbio.2001536

2017

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Genome sequencing of the behaviour manipulating virus LbFV reveals a possible new virus family

D. Lepetit, B. Gillet, S. Hughes, K. Kraaijeveld, Julien Varaldi

Genome Biology and Evolution . 8 : 3718-3738

DOI: 10.1093/gbe/evw277

2017

Article dans une revue

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Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)

Benjamin Rey, Cyril Dégletagne, Jacques Bodennec, Pierre-Axel Monternier, Mathieu Mortz, Damien Roussel...

Free Radical Biology and Medicine . 97 : 577–587

DOI: 10.1016/j.freeradbiomed.2016.07.015

2016

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Lipid-induced thermogenesis is up-regulated by the first cold-water immersions in juvenile penguins

Loïc Teulier, Benjamin Rey, Jérémy Tornos, Marion Le Coadic, Pierre-Axel Monternier, Aurore Bourguignon...

Journal of Comparative Physiology B . 186 : 639–650

DOI: 10.1007/s00360-016-0975-3

2016

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Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

Florence Carrouel, Stéphane Viennot, Julie Santamaria, Philippe Veber, Denis Bourgeois

Frontiers in Microbiology . 7 : 840 - 840

DOI: 10.3389/fmicb.2016.00840

2016

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Mutually honest? Physiological ‘qualities’ signalled by colour ornaments in monomorphic king penguins

Vincent A. Viblanc, F. Stephen Dobson, Antoine Stier, Quentin Schull, Claire Saraux, Benoît Gineste...

Biological Journal of the Linnean Society . 118 ( 2 ) : 200-214

DOI: 10.1111/bij.12729

2016

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Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

Valèria Romero-Soriano, Nelly Burlet, Doris Vela, Antonio Fontdevila, Cristina Vieira, Maria Pilar Garciá Guerreiro

Genome Biology and Evolution . 8 ( 3 ) : 556-561

DOI: 10.1093/gbe/evw024

2016

Article dans une revue

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Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

Camille Sessegolo, Nelly Burlet, Annabelle Haudry

Biology Letters . 12 ( 8 )

DOI: 10.1098/rsbl.2016.0407

2016

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No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Clémentine François, L. Duret, Laurent Simon, Florian Mermillod-Blondin, Florian Malard, Lara Konecny-Dupré...

Molecular Biology and Evolution . 33 ( 10 ) : 2605–2620

DOI: 10.1093/molbev/msw131

2016

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Factors associated with poor outcomes among adults hospitalised for influenza in France: A three-year prospective multicenter study

Paul Loubet, Nezha Samih-Lenzi, Florence Galtier, Philippe Vanhems, Pierre Loulergue, Xavier Duval...

Journal of Clinical Virology . 79 : 68–73

DOI: 10.1016/j.jcv.2016.04.005

2016

Article dans une revue

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RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit, Simon Penel, Stéphane Delmotte, Carine Rey, Damien de Vienne, Manolo Gouy...

Molecular Biology and Evolution . 33 ( 8 ) : 2170--2172

DOI: 10.1093/molbev/msw088

2016

Article dans une revue

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Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life

Benjamin Rey, Cyril Dégletagne, Claude Duchamp

Data in Brief . 9 : 549–555

DOI: 10.1016/j.dib.2016.09.021

2016

Article dans une revue

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Beneficial effects of group size on oxidative balance in a wild cooperative breeder

Sophie Lardy, Benjamin Rey, Karine Salin, Yann Voituron, Aurélie Cohas

Behavioral Ecology . 27 ( 6 ) : 1820–1825

DOI: 10.1093/beheco/arw114

2016

Article dans une revue

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How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

Sonia Kéfi, Vincent Miele, Evie Wieters, Sergio Navarrete, Eric Berlow

PLoS Biology . 14 ( 8 ) : e1002527

DOI: 10.1371/journal.pbio.1002527

2016

Article dans une revue

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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Eric Rivals, Claire Lemaitre...

GigaScience . 5 ( 1 )

DOI: 10.1186/s13742-015-0105-2

2016

Article dans une revue

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Calcul parallèle avec R

Vincent Miele, Violaine Louvet

978-2-7598-2060-3

2016

Ouvrage

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Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses

David Monnin, Natacha Kremer, C. Berny, Hélène Henri, Adeline Dumet, Yann Voituron...

Journal of Evolutionary Biology . 29 : 1211-1222

DOI: 10.1111/jeb.12863

2016

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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, Mathilde Boutigny...

Nucleic Acids Research .

DOI: 10.1093/nar/gkw655

2016

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Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies

Samuel Venner, A. Siberchicot, P.F. Pélisson, E. Schermer, Marie-Claude Bel-Venner, M. Nicolas...

American Naturalist . 188 ( 1 ) : 66-75

DOI: 10.1086/686684

2016

Article dans une revue

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Additional heritable virus in the parasitic wasp Leptopilina boulardi: prevalence, transmission and phenotypic effects

Julien Martinez, David Lepetit, Marc Ravallec, Frédéric Fleury, Julien Varaldi

Journal of General Virology . 97 : 523-535

DOI: 10.1099/jgv.0.000360

2016

Article dans une revue

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Résilience systémique d’un territoire composé d’activités essentielles suite à une perturbation majeure – Approches systémique et spatiale

Benjamin Rey

2015

Thèse

voir la publication

Pôles techniques

Pôle informatique

Pôle biotechnologique

Pôle administratif

Entretien des locaux

Publications

Complication-related removal of totally implantable venous access port systems: Does the interval between placement and first use and the neutropenia-inducing potential of chemotherapy regimens influence their incidence? A four-year prospective study of 4

Uncoupling effect of palmitate is exacerbated in skeletal muscle mitochondria of sea-acclimatized king penguins (Aptenodytes patagonicus)

High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Maternal age affects offspring nutrient dynamics

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Statistical clustering of temporal networks through a dynamic stochastic block model

Revealing the hidden structure of dynamic ecological networks

Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Ecological networks to unravel the routes to horizontal transposon transfers

Genome sequencing of the behaviour manipulating virus LbFV reveals a possible new virus family

Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)

Lipid-induced thermogenesis is up-regulated by the first cold-water immersions in juvenile penguins

Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

Mutually honest? Physiological ‘qualities’ signalled by colour ornaments in monomorphic king penguins

Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Factors associated with poor outcomes among adults hospitalised for influenza in France: A three-year prospective multicenter study

RiboDB database: a comprehensive resource for prokaryotic systematics

Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life

Beneficial effects of group size on oxidative balance in a wild cooperative breeder

How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Calcul parallèle avec R

Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies

Additional heritable virus in the parasitic wasp Leptopilina boulardi: prevalence, transmission and phenotypic effects

Résilience systémique d’un territoire composé d’activités essentielles suite à une perturbation majeure – Approches systémique et spatiale