GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

Affichage des publications 1 à 30 sur 1303 au total

Evolution and functional relevance of non-coding elements in vertebrate genomes

Anamaria Necsulea

HDR

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Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Rita Rebollo, Pierre Gerenton, Eric Cumunel, Arnaud Mary, François Sabot, Nelly Burlet...

DOI: 10.1101/2023.05.27.542554

Pré-publication

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From Inquilines to Gall Inducers: Genomic Signature of a Life-Style Transition in Synergus Gall Wasps

Erik Gobbo, Nicolas Lartillot, Jack Hearn, Graham N Stone, Yoshihisa Abe, Christopher W Wheat...

Genome Biology and Evolution . 12 : 2060 - 2073

DOI: 10.1093/gbe/evaa204

Article dans une revue

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Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements

Manuel Ares-Arroyo, Charles Coluzzi, Jorge A Moura de Sousa, Eduardo P C Rocha

PLoS Biology . 22 ( 8 ) : e3002796

DOI: 10.1371/journal.pbio.3002796

Article dans une revue

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A type IVB secretion system contributes to the pathogenicity of Yersinia pseudotuberculosis strains responsible for the Far East scarlet-like fever

Marion Lemarignier, Cyril Savin, Ines Ruedas Torres, Anne Derbise, Charles Coluzzi, Julien Burlaud-Gaillard...

DOI: 10.1101/2024.06.14.598817

Pré-publication

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Evo‐Scope : Fully automated assessment of correlated evolution on phylogenetic trees

Maxime Godfroid, Charles Coluzzi, Amaury Lambert, Philippe Glaser, Eduardo P C Rocha, Guillaume Achaz

Methods in Ecology and Evolution . 15 ( 2 ) : 282 - 289

DOI: 10.1111/2041-210x.14190

Article dans une revue

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Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis.

Nicolas Lartillot, Alice Genestier, Laurent Duret

RecomBern .

Acte de congrès

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The characterization of ancient Methanococcales malate dehydrogenases reveals that strong thermal stability prevents unfolding under intense γ-irradiation

D Madern, Frédéric Halgand, Chantal Houée-Levin, A-B Dufour, S Coquille, S Ansanay-Alex...

Molecular Biology and Evolution . : msae231

DOI: 10.1093/molbev/msae231

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High prevalence of Prdm9-independent recombination hotspots in placental mammals

Laurent Duret, Julien Joseph, Djivan Prentout, Alexandre Laverré, Théo Tricou

Probabilistic Modeling in Genomics Conference : ProbGen 2024 .

Acte de congrès

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The characterization of ancient Methanococcales malate dehydrogenases reveals that strong thermal stability prevents unfolding under intense γ-irradiation

D Madern, Frédéric Halgand, Chantal Houée-Levin, A-B Dufour, S Coquille, S Ansanay-Alex...

Molecular Biology and Evolution .

DOI: 10.1093/molbev/msae231

Article dans une revue

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Prevalence of PRDM9-dependent vs PRDM9-independent recombination hotspots in animals

Laurent Duret

RecomBern .

Acte de congrès

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Meta-analysis reveals limited reproducibility of lncRNA-related findings in hepatocellular carcinoma research

Anamaria Necsulea, Philippe Veber, Tuyana Boldanova, Charlotte Ky Ng, Stefan Wieland, Markus H Heim

DOI: 10.1101/2024.08.17.608405

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The Inca child of the Quehuar volcano: Stable isotopes clue to geographic origin and seasonal diet, with putative seaweed consumption

Eve Poulallion, Violeta Galván, Verónica Seldes, María Fernanda Zigarán, Gabriela Recagno Browning, François Fourel...

Journal of Archaeological Science: Reports . 59 : 104784

DOI: 10.1016/j.jasrep.2024.104784

Article dans une revue

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Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

Anthony B. Garza, Emmanuelle Lerat, Hani Z. Girgis

Mobile DNA . 15 ( 1 ) : 8

DOI: 10.1186/s13100-024-00317-w

Article dans une revue

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Touvrey, Laurent Poulet, Sophie Drouillard...

DOI: 10.1101/2023.03.30.534863

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Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions

Marie Verneret, van Anthony Le, Thomas Faraut, Jocelyn Turpin, Emmanuelle Lerat

DOI: 10.1101/2024.09.25.614865

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Small ruminants versus endogenous retroviruses: an evolutive showdown still in progress in the domestic goat genome

Marie Verneret, Caroline Leroux, Vincent Navratil, Thomas Faraut, Jocelyn Turpin, Emmanuelle Lerat

International congress on transposable elements .

Poster

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Computing Thermodynamically Consistent Elementary Flux Modes with Answer Set Programming

Emma Crisci, Maxime Mahout, Sabine Peres

CMSB 2024 - 22nd International Conference Computational Methods in Systems Biology . LNCS-14971 : 80-88

DOI: 10.1007/978-3-031-71671-3_7

Acte de congrès

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A genome-wide study of ruminants reveals two endogenous retrovirus families still active in goats

Marie Verneret, Caroline Leroux, Thomas Faraut, Vincent Navratil, Emmanuelle Lerat, Jocelyn Turpin

DOI: 10.1101/2024.06.21.600049

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Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

Anthony B. Garza, Emmanuelle Lerat, Hani Z. Girgis

Mobile DNA . 15 ( 1 ) : 8

DOI: 10.1186/s13100-024-00317-w

Article dans une revue

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Diversité et diversification des Pectobacteriaceae, une famille de bactéries phytopathogènes d’importance mondiale

Céline Brochier, Nicole Hugouvieux-Cotte-Pattat, Jean-Pierre Flandrois, Sylvie Reverchon, Jérôme Briolay

Cahiers Scientifiques de la Fondation Pierre Vérots . ( 10 ) : 19-29

Article dans une revue

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ISMB/ECCB 2023 organization benefited from the strengths of the French bioinformatics community

Anna-Sophie Fiston-Lavier, Sandra Dérozier, Guy Perrière

Bioinformatics Advances . 4 ( 1 ) : vbae040

DOI: 10.1093/bioadv/vbae040

Article dans une revue

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Bradyrhizobium hardenbergiae sp. nov., isolated from Hardenbergia violacea in Australia, represents a novel basal lineage of the B. elkanii supergroup

Bénédicte Lafay, Elina Coquery, Phil M. Oger

Pré-publication

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A Wright–Fisher graph model and the impact of directional selection on genetic variation

Ingemar Kaj, Carina Mugal, Rebekka Müller-Widmann

Theoretical Population Biology . 159 : 13-24

DOI: 10.1016/j.tpb.2024.07.004

Article dans une revue

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Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam

Dinh Huong Thao, Tran Huu Dinh, Shigeki Mitsunaga, La Duc Duy, Nguyen Thanh Phuong, Nguyen Phuong Anh...

PLoS ONE . 19 ( 6 ) : e0304964

DOI: 10.1371/journal.pone.0304964

Article dans une revue

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Complete mitochondrial genomes of patients from Thailand with cardiovascular diseases

Wipada Woravatin, Rattanasak Wongkomonched, Wichittra Tassaneeyakul, Mark Stoneking, Pattarapong Makarawate, Wibhu Kutanan

PLoS ONE . 19 ( 7 ) : e0307036

DOI: 10.1371/journal.pone.0307036

Article dans une revue

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