GECO Evolutionary and Computational Genomics
Publications
Display of 1 to 30 publications on 1132 in total
Hybrid modelling to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling
BIOSTEC 2023 .
Conference paper
see the publicationMutations in the non-coding RNU4ATAC gene affect the homeostasis and function of the Integrator complex
Nucleic Acids Research .
DOI: 10.1093/nar/gkac1182
Journal article
see the publicationGeometric programming to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling
International Conference on System Biology .
Conference paper
see the publicationSpecial Issue on “Frontiers in Connecting Steady-State and Dynamic Approaches for Modelling Cell Metabolic Behavior”
Processes . 10 ( 8 ) : 1612
DOI: 10.3390/pr10081612
Journal article
see the publicationHybrid metabolic modeling to identify new control strategies of living organisms
Hybrid models and methods in systems medicine .
Conference paper
see the publicationMod ́elisation m ́etabolique pour identifier de nouvelles strat ́egies de contrˆole des organismes vivants
Meetochondrie .
Conference paper
see the publicationNeural Networks beyond explainability: Selective inference for sequence motifs
Preprint
see the publicationGenes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale
Preprint
see the publicationRecent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements
Frontiers in Genetics . 13
Journal article
see the publicationThe era of reference genomes in conservation genomics
Trends in Ecology and Evolution . 37 ( 3 ) : 197-202
Journal article
see the publicationMycobacterium tuberculosis genetic features associated with pulmonary tuberculosis severity
International Journal of Infectious Diseases . 125 : 74-83
Journal article
see the publicationBrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data
GigaScience . 11
Journal article
see the publicationPopulation designations in biomedical research: limitations and perspectives
HLA: Immune Response Genetics .
DOI: 10.1111/tan.14852
Journal article
see the publicationModelling the spatiotemporal spread of beneficial alleles using ancient genomes
Preprint
see the publicationCodiversification of gut microbiota with humans
Science . 377 ( 6612 ) : 1328-1332
Journal article
see the publicationThe era of reference genomes in conservation genomics
Trends in Ecology & Evolution . 37 ( 3 ) : 197-202
Journal article
see the publicationThe era of reference genomes in conservation genomics
Trends in Ecology & Evolution .
Journal article
see the publicationProtein conformational space at the edge of allostery: turning a nonallosteric malate dehydrogenase into an “allosterized” enzyme using evolution-guided punctual mutations
Molecular Biology and Evolution . 39 ( 9 ) : msac186
Journal article
see the publicationGOntact: using chromatin contacts to infer Gene Ontology enrichments for cis -regulatory elements
Preprint
see the publicationAn Improved Codon Modeling Approach for Accurate Estimation of the Mutation Bias
Molecular Biology and Evolution . 39
Journal article
see the publicationIdentifying the best approximating model in Bayesian phylogenetics: Bayes factors, cross-validation or wAIC?
Preprint
see the publicationPhyloformer: towards fast and accurate phylogeny estimation with self-attention networks
Preprint
see the publicationEfficiently sparse listing of classes of optimal cophylogeny reconciliations
Algorithms for Molecular Biology . 17 ( 1 ) : 1-16
Journal article
see the publicationTotoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations
Frontiers in Genetics . 13 : 1-12
Journal article
see the publicationRecent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements
Frontiers in Genetics . 13
Journal article
see the publicationCALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS
Bioinformatics .
Journal article
see the publicationA divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea
BMC Ecology and Evolution . 22 ( 1 ) : 1-12
Journal article
see the publicationLong-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness
Genome Research . 32 ( 2 ) : 280-296
Journal article
see the publication