GECO Evolutionary and Computational Genomics
Publications
Display of 1 to 30 publications on 1071 in total
Efficiently sparse listing of classes of optimal cophylogeny reconciliations
Algorithms for Molecular Biology . 17 ( 1 ) : 1-16
Journal article
see the publicationTotoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations
Frontiers in Genetics . 13 : 1-12
Journal article
see the publicationA divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea
BMC Ecology and Evolution . 22 ( 1 ) : 1-12
Journal article
see the publicationLabile sex expression in angiosperm species with sex chromosomes
Philosophical Transactions of the Royal Society B: Biological Sciences . 377 ( 1850 )
Journal article
see the publicationLong-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness
Genome Research . 32 ( 2 ) : 280-296
Journal article
see the publicationA derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants
New Phytologist . 233 : 1636-1642
DOI: 10.1111/nph.17662
Journal article
see the publicationCALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS
Preprint
see the publicationWithin-host genetic micro-diversity of Mycobacterium tuberculosis and the link with tuberculosis disease features
Preprint
see the publicationSLIT2/ROBO signaling in tumor-associated microglia and macrophages drives glioblastoma immunosuppression and vascular dysmorphia
The Journal of clinical investigation . 131 ( 16 )
DOI: 10.1172/JCI141083
Journal article
see the publicationA General Framework for Enumerating Equivalence Classes of Solutions
ESA 2021 - 29th Annual European Symposium on Algorithms . : 1-14
Conference paper
see the publicationDichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis
MSphere . 6 ( 1 )
Journal article
see the publicationA family of tree-based generators for bubbles in directed graphs
Journal of Graph Algorithms and Applications . 25 ( 1 ) : 549-562
DOI: 10.7155/jgaa.00572
Journal article
see the publicationA comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog
NAR Genomics and Bioinformatics . 3 ( 1 )
Journal article
see the publicationThe Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study
Molecular Biology and Evolution . 38 ( 5 ) : 1761–1776
Journal article
see the publicationSeaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation
Multiple Sequence Alignment . 2231 : 241-260
Book chapter
see the publicationResurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins : Deciphering Gene Trajectories and Changes in Biochemical Properties
Molecular Biology and Evolution . : 1-44
Journal article
see the publicationA Comprehensive Evolutionary Scenario of Cell Division and Associated Processes in the Firmicutes
Molecular Biology and Evolution . 38 ( 6 ) : 2396-2412
Journal article
see the publicationPlant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes
New Phytologist . 231 ( 4 ) : 1599-1611
DOI: 10.1111/nph.17456
Journal article
see the publicationStructural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Scientific Reports . 11 ( 1 ) : 972
Journal article
see the publicationComplete genome of Bradyrhizobium sp. strain BDV5419, representative of Australian genospecies L
Microbiology Resource Announcements . 10 ( 8 ) : e00042-21
DOI: 10.1128/MRA.00042-21
Journal article
see the publicationComplete Genome Sequence of Bradyrhizobium sp. Strain BDV5040, Representative of Widespread Genospecies B in Australia
Microbiology Resource Announcements . 10 ( 3 ) : e01326-20
DOI: 10.1128/MRA.01326-20
Journal article
see the publicationNatural Selection beyond Life? A Workshop Report
Life . 11 ( 10 ) : 1051
DOI: 10.3390/life11101051
Journal article
see the publicationReconstruction of body mass evolution in the Cetartiodactyla and mammals using phylogenomic data.
Peer Community Journal . 1 : e42
Journal article
see the publicationDetecting sex-linked genes using genotyped individuals sampled in natural populations
Genetics . 218 ( 2 )
Journal article
see the publicationPulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling
Systematic Biology .
Journal article
see the publicationTransposable element activity in the transcriptomic analysis of mouse pancreatic tumors
Preprint
see the publicationA new tool to cross and analyze TE and gene annotations
Peer Community in Genomics . : 100010
Other publication
see the publicationA Bayesian Mutation–Selection Framework for Detecting Site-Specific Adaptive Evolution in Protein-Coding Genes
Molecular Biology and Evolution . 38 ( 3 ) : 1199-1208
Journal article
see the publicationUniversal probabilistic programming offers a powerful approach to statistical phylogenetics
Communications Biology . 4 ( 1 )
Journal article
see the publication