Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Dray Stéphane

Directeur de recherche

CNRS

Address: 69622 VILLEURBANNE cedex
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 27 57

Email

I am a statistical ecologist (aka biometrician, biostatistician, quantitative ecologist, numerical ecologist, etc.). My work consists in developing novel statistical methods for analyzing biological data with a special emphasis on multivariate analysis and spatial statistics. I am mainly interested in understanding the role of multiple factors (e.g., species traits, environment) that influence the (spatial) structure of ecological communities and control beta diversity.

More details at https://sdray.github.io/

Publications

Display of 1 to 30 publications on 90 in total

Mycobacterium tuberculosis genetic features associated with pulmonary tuberculosis severity

Charlotte Genestet, Guislaine Refrégier, Elisabeth Hodille, Rima Zein-Eddine, Adrien Le Meur, Fiona Hak...

International Journal of Infectious Diseases .

DOI: 10.1016/j.ijid.2022.10.026

Journal article

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Editorial: Advances in Statistical Ecology: New Methods and Software

Gilles Guillot, Ali Arab, Janine Bärbel Illian, Stéphane Dray

Frontiers in Ecology and Evolution . 9

DOI: 10.3389/fevo.2021.828919

Journal article

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Quantifying the overall effect of biotic interactions on species communities along environmental gradients

Vincent Miele, Catherine Matias, Marc Ohlmann, Giovanni Poggiato, Stéphane Dray, Wilfried Thuiller

Preprint

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An appraisal of graph embeddings for comparing trophic network architectures

Christophe Botella, Stéphane Dray, Catherine Matias, Vincent Miele, Wilfried Thuiller

Methods in Ecology and Evolution . 13 ( 1 ) : 203-216

DOI: 10.1111/2041-210X.13738

Journal article

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Genetic and species‐level biodiversity patterns are linked by demography and ecological opportunity

Chloé Schmidt, Stéphane Dray, Colin J Garroway

Evolution - International Journal of Organic Evolution . 76

DOI: 10.1111/evo.14407

Journal article

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Determinants of genetic diversity and species richness of North American amphibians

Chloé Schmidt, Jason Munshi-South, Stéphane Dray, Colin J Garroway

Journal of Biogeography . 49 ( 11 ) : 2005-2015

DOI: 10.1101/2021.01.04.425301

Journal article

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Are human natal sex ratio differences across the world adaptive? A test of Fisher's principle

Mathieu Douhard, Stéphane Dray

Biology Letters . 17 ( 3 )

DOI: 10.1098/rsbl.2020.0620

Journal article

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Overcoming the Spurious Groups Problem in Between-Group PCA

Jean Thioulouse, Sabrina Renaud, Anne-Béatrice Dufour, Stéphane Dray

Evolutionary Biology .

DOI: 10.1007/s11692-021-09550-0

Journal article

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Long‐term high densities of African elephants clear the understorey and promote a new stable savanna woodland community

Nicolas Ferry, Stéphane Dray, Hervé Fritz, Audrey Ipavec, Benjamin Wigley, Tristan Charles‐dominique...

Journal of Vegetation Science . 32 ( 6 )

DOI: 10.1111/jvs.13101

Journal article

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Images, écologie et deep learning

Vincent Miele, Stéphane Dray, Olivier O. Gimenez

Regards sur la biodiversité .

Journal article

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Heterogeneity of water physico-chemical characteristics in artificially pumped waterholes: do African herbivores drink at the same locations and does it lead to interference competition?

Nicolas Ferry, Marion Cordonnier, Florence Hulot, Farisayi Dakwa, Lovelater Sebele, Stéphane Dray...

Journal of Arid Environments . 173 : 104014

DOI: 10.1016/j.jaridenv.2019.104014

Journal article

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Can an herbivore affect where a top predator kills its prey by modifying woody vegetation structure?

Nicolas Ferry, Moreangels Mbizah, Andrew Loveridge, David Macdonald, Stéphane Dray, Hervé Fritz...

Oecologia . 192 ( 3 ) : 779-789

DOI: 10.1007/s00442-020-04617-9

Journal article

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Investigating microbial associations from sequencing survey data with co-correspondence analysis

Benjamin Alric, Cajo J.F. ter Braak, Yves Desdevises, Hugo Lebredonchel, Stéphane Dray

Molecular Ecology Resources . 20 ( 2 ) : 468-480

DOI: 10.1111/1755-0998.13126

Journal article

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Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Christophe Plantamp, Hélène Henri, Thibault Andrieux, Corinne Régis, Gladys Mialdea, Stéphane Dray...

Journal of Experimental Biology . 222 : jeb199398

DOI: 10.1242/jeb.199398

Journal article

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Flower phenology as a disruptor of the fruiting dynamics in temperate oak species

Éliane Schermer, Marie-Claude Bel-Venner, Jean‐michel Gaillard, Vincent Boulanger, Stéphane Dray, Iris Le Roncé...

New Phytologist . 225 ( 3 ) : 1181-1192

DOI: 10.1111/nph.16224

Journal article

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Testing the Mantel statistic with a spatially‐constrained permutation procedure

Julie Crabot, Sylvie Clappe, Stéphane Dray, T. Datry

Methods in Ecology and Evolution . 10 ( 4 ) : 532-540

DOI: 10.1111/2041-210X.13141

Journal article

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Spatial analyses of multi-trophic terrestrial vertebrate assemblages in Europe

Joao Braga, Laura Pollock, Ceres Barros, Núria Galiana Ibañez, José Montoya, Dominique Gravel...

Global Ecology and Biogeography . 28 ( 11 ) : 1636-1648

DOI: 10.1111/geb.12981

Journal article

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Nine Quick Tips for Analyzing Network Data

Vincent Miele, Stephane S. Robin, Catherine Matias, Stéphane Dray

PLoS Computational Biology . 15 ( 12 ) : e1007434

DOI: 10.1371/journal.pcbi.1007434

Journal article

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Diversity indices for ecological networks: a unifying framework using Hill numbers

Marc Ohlmann, Vincent Miele, Stéphane Dray, Loic Chalmandrier, Louise O’connor, Wilfried Thuiller

Ecology Letters . 22 ( 4 ) : 737-747

DOI: 10.1111/ele.13221

Journal article

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Disentangling good from bad practices in the selection of spatial or phylogenetic eigenvectors

David Bauman, Thomas Drouet, Stéphane Dray, Jason Vleminckx

Ecography . 41 ( 10 ) : 1638-1649

DOI: 10.1111/ecog.03380

Journal article

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Optimizing the choice of a spatial weighting matrix in eigenvector-based methods

David Bauman, Thomas Drouet, Marie-Josée Fortin, Stéphane Dray

Ecology . 99 ( 10 ) : 2159-2166

DOI: 10.1002/ecy.2469

Journal article

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Simple parametric tests for trait–environment association

Cajo J.F. ter Braak, Pedro Peres‐neto, Stéphane Dray

Journal of Vegetation Science . 29 ( 5 ) : 801-811

DOI: 10.1111/jvs.12666

Journal article

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Supervised Multiblock Analysis in R with the ade4 Package

Stéphanie Bougeard, Stéphane Dray

Journal of Statistical Software . 86 ( 1 )

DOI: 10.18637/jss.v086.i01

Journal article

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Multivariate Analysis of Ecological Data with ade4

Jean Thioulouse, Stéphane Dray, Anne-Béatrice Dufour, Aurélie Siberchicot, Thibaut Jombart, Sandrine Pavoine

DOI: 10.1007/978-1-4939-8850-1

Book

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Integrating spatial and phylogenetic information in the fourth‐corner analysis to test trait–environment relationships

Joao Braga, Cajo J.F. ter Braak, Wilfried Thuiller, Stéphane Dray

Ecology . 99 ( 12 ) : 2667-2674

Journal article

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Beyond neutrality: disentangling the effects of species sorting and spurious correlations in community analysis

Sylvie Clappe, Stéphane Dray, Pedro Peres-Neto

Ecology . 99 ( 8 ) : 1737-1747

DOI: 10.1002/ecy.2376

Journal article

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Algorithms and biplots for double constrained correspondence analysis

Cajo J.F. ter Braak, Petr Šmilauer, Stéphane Dray

Environmental and Ecological Statistics . 25 ( 2 ) : 171-197

DOI: 10.1007/s10651-017-0395-x

Journal article

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adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Aurélie Siberchicot, A. Julien-Laferrière, Ab. Dufour, J. Thioulouse, S. Dray

The R Journal . 9 ( 2 ) : 198-212

DOI: 10.32614/RJ-2017-042

Journal article

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A critical issue in model-based inference for studying trait-based community assembly and a solution

Cajo J. F. ter Braak, P. Peres-Neto, Stéphane Dray

PeerJ . 5 : e2885

DOI: 10.7717/peerj.2885

Journal article

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Molecular phylogeny of the highly diversified catfish subfamily Loricariinae (Siluriformes, Loricariidae) reveals incongruences with morphological classification

R. Covain, S. Fisch-Muller, C. Oliveira, J. H. Mol, J. I. Montoya-Burgos, Stéphane Dray

Molecular Phylogenetics and Evolution . 94 : 492-517

DOI: 10.1016/j.ympev.2015.10.018

Journal article

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