GECO Evolutionary and Computational Genomics

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

P. Lopez-Garcia, Céline Brochier-Armanet, D. Moreira, F. Rodriguez-Valera

Environmental Microbiology . 6 : 19-34

2004

Journal article

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Molecular analysis of the hypervariable regions in the minicircle of kinetoplastic genome in Trypanosoma cruzi, agent of Chagas'disease

Jenny Telleria, Bénédicte Lafay, Myrna Virreira, Christian Barnabé, Michel Tibayrenc, M. Svoboda

VII INTERNATIONAL MEETING ON MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS OF INFECTIOUS DISEASES (MEEGID VII) .

2004

Conference paper

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Brucella est un ochrobactrum à génome réduit

Corinne Teyssier, Bénédicte Lafay, Agnès Masnou, Estelle Jumas-Bilak, Hélène Marchandin

VI eme Congrès de la Société Française de Microbiologie .

2004

Conference paper

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CAT : Un Modèle Phylogénétique Bayésien permettant de prendre en compte l'Hétérogénéité des Processus de Substitution entre Sites dans les Alignements Protéiques

Nicolas Lartillot, Herve Philippe

Biosystema 22 . 22 : 97-104

2004

Book chapter

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$Psi$-$Phi$: Exploring the outer limits of bacterial pseudogenes

E. Lerat, H. Ochman

Genome Research . 14 : 2273-2278

2004

Journal article

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Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Abdel Aouacheria, Caroline Cluzel, Claire Lethias, Manolo Gouy, Robert Garrone, Jean-Yves Exposito

Journal of Biological Chemistry . 279 ( 46 ) : 47711-47719

DOI: 10.1074/jbc.M408950200

2004

Journal article

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Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.

Laurent Michon, L. Morle, M. Bozon, L. Duret, Zech J. C., J. Godet...

European Journal of Human Genetics . ( 12 ) : 574-578

2004

Journal article

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Evidence of a high rate of selective sweeps in African Drosophila melanogaster

Sylvain Mousset, L. Brazier, M.L. Cariou, F. Chartois, F. Depaulis, M. Veuille

Genetics . 163 : 599-609

2003

Journal article

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Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach

S. Glinka, L. Ometto, Sylvain Mousset, W. Stephan, D. de Lorenzo

Genetics . 165 : 1269-1278

2003

Journal article

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Power of neutrality tests to detect bottlenecks and hitchhiking

F. Depaulis, Sylvain Mousset, M. Veuille

Journal of Molecular Evolution . 57 : S190-S200

2003

Journal article

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Mitochondrial DNA evidence for admixed origins of central Siberian populations

Brigitte Pakendorf, Victor Wiebe, Larissa Tarskaia, Victor Spitsyn, Himla Soodyall, Alexander Rodewald...

American Journal of Physical Anthropology . 120 ( 3 ) : 211-224

2003

Journal article

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Neutral effect of recombination on base composition in Drosophila

Gabriel Marais, Dominique Mouchiroud, L. Duret

Genetical Research . 81 : 79-89

2003

Journal article

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Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element

I. Bièche, A. Laurent, I. Laurendeau, L. Duret, Y. Giovangrandi, J.L. Frendo...

Biology of Reproduction . 68 : 1422-1429.

2003

Journal article

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Patterns of selection against transposons inferred from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

C. Rizzon, E. Martin, Gabriel Marais, L. Duret, L. Segalat, C. Biémont

Genetics . 165 : 1127-1135

2003

Journal article

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A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

International Symposium on Mathematical Foundations of Computer Science 2003 . 2747 : 622-632

DOI: 10.1007/978-3-540-45138-9_56

2003

Conference paper

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G+C3 structuring along the genome: a common feature in prokaryotes

Vincent Daubin, G. Perrière

Molecular Biology and Evolution . 20 : 471-483

2003

Journal article

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The source of laterally transferred genes in bacterial genomes

Vincent Daubin, E. Lerat, G. Perrière

Genome Biology . 4 : R57.1-R57.12

2003

Journal article

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RTKdb: database of Receptor Tyrosine Kinase

J. Grassot, G. Mouchiroud, G. Perrière

Nucleic Acids Research . 31 : 353-358

2003

Journal article

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Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

S. Charles-Bajard, Jean-Pierre Flandrois, R. Tomassone

Revue de Statistique Appliquée . LI : 59-71

2003

Journal article

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MgtC as a horizontally-acquired virulence factor of intracellular bacterial pathogens: evidence from molecular phylogeny and comparative genomics.

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

Journal of Molecular Evolution . 57 ( 4 ) : 479-86

DOI: 10.1007/s00239-003-2496-4

2003

Journal article

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

Emmanuelle Lerat, Vincent Daubin, Nancy Moran

PLoS Biology . 1 ( 1 ) : 101-109

DOI: 10.1371/journal.pbio.0000019

2003

Journal article

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Sequence divergence within transposable element families in the Drosophila melanogaster genome

E. Lerat, C. Rizzon, C. Biémont

Genome Research . 13 : 1889-1896

2003

Journal article

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Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere, C. Combet, Simon Penel, Christophe Blanchet, J. Thioulouse, C. Geourjon...

Nucleic Acids Research . 31 ( 13 ) : 3393-3399

DOI: 10.1093/nar/gkg530

2003

Journal article

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Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Carène Rizzon, Edwige Martin, Gabriel Marais, Laurent Duret, Laurent Ségalat, Christian Biémont

Genetics . 165 ( 3 ) : 1127-35

2003

Journal article

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ROSO: a software to search optimized oligonucleotide probes for microarrays

Nancie Reymond, Hubert Charles, Guillaume Beslon, Laurent Duret, Jean-Michel Fayard

14. Rencontres Régionales de la Recherche .

2003

Poster

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Jean-Pierre Rouault, Olga Assossou, Franã§oise Besson, Florence Persat, Christine Brisson, Laurent Duret...

FEMS Microbiology Letters . 224 ( 2 ) : 161-168

DOI: 10.1016/S0378-1097(03)00479-8

2003

Journal article

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

O. Assossou, F. Besson, J.P. Rouault, F. Persat, C. Brisson, L. Duret...

FEMS Microbiology Letters . 224 : 161-168.

DOI: 10.1016/S0378-1097(03)00479-8

2003

Journal article

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Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

C. Rizzon, E. Martin, G. Marais, L. Duret, L. Segalat, C. Biemont

Genetics . ( 165 ) : 1127-1135

2003

Journal article

see the publication

Orphan gene finding - An exon assembly approach

Philippe Blayo, Pierre Rouzé, Marie-France Sagot

Theoretical Computer Science . 290 ( 1 ) : 1407-1431

2003

Journal article

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Pattern inference under many guises

M.-F. Sagot, Y. Wakabayashi

incollection . -- : 245-288

2003

Journal article

see the publication

GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

Molecular analysis of the hypervariable regions in the minicircle of kinetoplastic genome in Trypanosoma cruzi, agent of Chagas'disease

Brucella est un ochrobactrum à génome réduit

CAT : Un Modèle Phylogénétique Bayésien permettant de prendre en compte l'Hétérogénéité des Processus de Substitution entre Sites dans les Alignements Protéiques

$Psi$-$Phi$: Exploring the outer limits of bacterial pseudogenes

Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.

Evidence of a high rate of selective sweeps in African Drosophila melanogaster

Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach

Power of neutrality tests to detect bottlenecks and hitchhiking

Mitochondrial DNA evidence for admixed origins of central Siberian populations

Neutral effect of recombination on base composition in Drosophila

Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element

Patterns of selection against transposons inferred from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum

G+C3 structuring along the genome: a common feature in prokaryotes

The source of laterally transferred genes in bacterial genomes

RTKdb: database of Receptor Tyrosine Kinase

Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

MgtC as a horizontally-acquired virulence factor of intracellular bacterial pathogens: evidence from molecular phylogeny and comparative genomics.

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

Sequence divergence within transposable element families in the Drosophila melanogaster genome

Integrated databanks access and sequence/structure analysis services at the PBIL.

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

ROSO: a software to search optimized oligonucleotide probes for microarrays

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Orphan gene finding - An exon assembly approach

Pattern inference under many guises