GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 1141 to 1170 publications on 1248 in total

Searching for repeated words in a text allowing for mismatches and gaps

M-F. Sagot, V. Escalier, Alain Viari, H. Soldano

incollection . -- : 87-100

Journal article

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Inferring phylogenies from DNA sequences of unequal base compositions.

N. Galtier, Manolo Gouy

Proceedings of the National Academy of Sciences of the United States of America . 92 ( 24 ) : 11317-11321

DOI: 10.1073/pnas.92.24.11317

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Olecranon bursitis due toPrototheca wickerhamii, an algal opportunistic pathogen

M. Montclos, G. Chatte, M. Perrin-Fayolle, Jean-Pierre Flandrois

European Journal of Clinical Microbiology and Infectious Diseases . 14 ( 6 ) : 561-562

DOI: 10.1007/bf02113444

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The effect of incubation temperature and sodium chloride concentration on the growth kinetics of Vibrio anguillarum and Vibrio anguillarum -related organisms

Véronique Guérin-Faublée, L. Rosso, Martine Vigneulle, J.-P. Flandrois

The Journal of applied bacteriology . 78 ( 6 ) : 621-629

DOI: 10.1111/j.1365-2672.1995.tb03108.x

Journal article

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Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima.

Bénédicte Lafay, Raymond Ruimy, Catherine Rausch de Traubenberg, Violette Breittmayer, Michel J. Gauthier, Richard Christen

International Journal of Systematic Bacteriology . 45 ( 2 ) : 290-6

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A combined morphological and molecular approach to the phylogeny of asteroids (Asteroidea: Echinodermata)

Bénédicte Lafay, Richard Christen, Andrew B. Smith

Systematic Biology . 44 ( 2 ) : 190-208

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Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores

L. Duret, Dominique Mouchiroud, Christian Gautier

Journal of Molecular Evolution . 40 : 308-317

Journal article

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Finding flexible patterns in a text - An application to 3D matching

M-F. Sagot, Alain Viari, J. Pothier, H. Soldano

Computer Applications in the Biosciences . 11 : 59-70

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Multiple Sequence Comparison:A Peptide Matching Approach

M-F. Sagot, Alain Viari, H. Soldano

incollection . 937 : 366-385

Journal article

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Convenient Model To Describe the Combined Effects of Temperature and pH on Microbial Growth

L. Rosso, J.R. Lobry, S. Bajard, Jean-Pierre Flandrois

Applied and Environmental Microbiology . 61 : 610-616

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Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov.

Gilles Gauthier, Bénédicte Lafay, Raymond Ruimy, Violette Breittmayer, Jean-Louis Nicolas, Richard Christen

International Journal of Systematic Bacteriology . 45 ( 1 ) : 139-44

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Ophiuroid phylogeny and higher taxonomy: morphological, molecular and palaeontological perspectives

Andrew B. Smith, Gordon L.J. Paterson, Bénédicte Lafay

Zoological Journal of the Linnean Society . 114 : 213-243

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Accuracy of microbial growth predictions with square root and polynomial models

Jean-Pierre Flandrois, M. Delignette-Muller

International Journal of Food Microbiology . 27 ( 2-3 ) : 139-146

DOI: 10.1016/0168-1605(94)00158-3

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Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias

R. Rimokh, F. Berger, C. Bastard, B. Klein, M. French, E. Archimbaud...

Blood . 83 : 3689-3696

Journal article

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NRSub: a non-redundant data base for the Bacillus subtilis genome

G. Perrière, Manolo Gouy, T. Gojobori

Nucleic Acids Research . 22 ( 25 ) : 5525-5529

DOI: 10.1093/nar/22.25.5525

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HOVERGEN: a database of homologous vertebrate genes

L. Duret, Dominique Mouchiroud, Manolo Gouy

Nucleic Acids Research . 22 ( 12 ) : 2360-2365

DOI: 10.1093/nar/22.12.2360

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Molecular Phylogenetic Analysis of Nitrobacter spp

S. Orso, Manolo Gouy, E. Navarro, P. Normand

International Journal of Systematic Bacteriology . 44 ( 1 ) : 83-86

DOI: 10.1099/00207713-44-1-83

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Heterogeneity of hepatitis C virus genotypes in France

D. Qu, O. Hantz, Manolo Gouy, L. Vitvitski, J.S. Li, F. Berby...

Journal of General Virology . 75 ( Pt 5) : 1063-1070

DOI: 10.1099/0022-1317-75-5-1063

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Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences.

Raymond Ruimy, Violette Breittmayer, Philippe Elbaze, Bénédicte Lafay, Odile Boussemart, Michel Gautier...

International Journal of Systematic Bacteriology . 44 ( 3 ) : 416-26

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Mathematical model of the interactions between Micrococcus spp. and Pseudomonas aeruginosa on agar surface

J.-P. Flandrois, Catherine Chapuis

The Journal of applied bacteriology . 77 ( 6 ) : 727-732

DOI: 10.1111/j.1365-2672.1994.tb02826.x

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[Post-antibiotic effect of three aminoglycosides against Klebsiella pneumoniae].

M de Montclos, M. Guinet, Jean-Pierre Flandrois, Catherine Chapuis

Pathologie Biologie . 42 ( 5 ) : 419-24

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An accurate diffusion method for determining bacterial sensitivity to antibiotics

M. Delignette-Muller, Jean-Pierre Flandrois

Journal of Antimicrobial Chemotherapy . 34 ( 1 ) : 73-81

DOI: 10.1093/jac/34.1.73

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Molecular phylogeny of Eubacteria: a new multiple tree analysis method applied to 15 sequence data sets questions the monophyly of Gram-positive bacteria

N. Galtier, Manolo Gouy

Research in Microbiology . 145 ( 7 ) : 531-541

DOI: 10.1016/0923-2508(94)90030-2

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ColiGene: object-centered representation for the study of E coli gene expressivity by sequence analysis

G. Perrière, Christian Gautier

Biochimie . 75 : 415-422

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Building large knowledge bases in molecular biology

O. Schmeltzer, C. Medigue, P. Uvietta, F. Rechenmann, F. Dorkeld, G. Perrière...

In Proceedings of the First International Conference on Intelligent Systems for Molecular Biology . 1 : 345-353

Journal article

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Morphological and molecular phylogeny of ophiuroids

Andrew B. Smith, Bénédicte Lafay, Gordon L.J. Paterson

Eigth International Echinoderm Conference .

Conference paper

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An analysis of partial 28S ribosomal RNA sequence suggests early radiations within the phylum Porifera

Bénédicte Lafay, Nicole Boury-Esnault, Jean Vacelet, Richard Christen

4th International Porifera Congress "Sponges in Time and Space" .

Conference paper

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Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions

Jean-Pierre Rouault, J.P. Rouault, C. Samarut, L. Duret, C. Tessa, J. Samarut...

Gene . 129 ( 2 ) : 303-306

DOI: 10.1016/0378-1119(93)90284-A

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