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Showing results 3241 to 3260 on 8474 in total
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RecPhyloXML: a format for reconciled gene trees
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Celine Scornavacca, Gergely Szöllősi, Louxin Zhang, Eric Tannier, Vincent Daubin
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Gene transfers can date the tree of life
Adrián Davín, Eric Tannier, Tom A Williams, Bastien Boussau, Vincent Daubin, Gergely Szöllősi
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Integrative modeling of gene and genome evolution roots the archaeal tree of life
Tom Williams, Gergely Szöllősi, Anja Spang, Peter Foster, Sarah Heaps, Bastien Boussau, Thijs Ettema, T. Martin Embley
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Mathieu Groussin, Bastien Boussau, Gergely J Szollosi, Laura Eme, Manolo Gouy, Céline Brochier-Armanet, Vincent Daubin
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Dating with transfers
Adrián Davín, Gergely J Szöllosi, Eric Tannier, Bastien Boussau, Vincent Daubin
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RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
S. Hohna, M. J. Landis, T. A. Heath, Bastien Boussau, Nicolas Lartillot, B. R. Moore, J. P. Huelsenbeck, F. Ronquist
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Response to Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree
S. Mirarab, M. Bayzid, B. Boussau, T. Warnow
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Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
Md Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau, Tandy Warnow
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Assessing Approaches for Inferring Species Trees from Multi-Copy Genes
Ruchi Chaudhary, Bastien Boussau, J. Gordon Burleigh, David Fernández-Baca
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Genome-scale phylogenetic analysis finds extensive gene transfer among fungi
G.J. Szollosi, Adrián Arellano Davin, Eric Tannier, Vincent Daubin, Bastien Boussau
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The inference of gene trees with species trees
Gergely Szöllősi, Eric Tannier, Vincent Daubin, Bastien Boussau
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Whole-genome analyses resolve early branches in the tree of life of modern birds.
Erich Jarvis, Siavash Mirarab, Andre Aberer, Bo Li, Peter Houde, Cai Li, Simon Y.W. Ho, Brant Faircloth, Benoit Nabholz, Jason Howard, Alexander Suh, Claudia Weber, Rute da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganesh Ganapathy, Bastien Boussau, Md Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldón, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley Warren, David Ray, Richard Green, Michael Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth Derryberry, Mads Frost Bertelsen, Frederick Sheldon, Robb Brumfield, Claudio Mello, Peter Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, José Alfredo Samaniego, Amhed Missael Vargas Velazquez, Alonzo Alfaro-Núñez, Paula Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David Lambert, Qi Zhou, Polina Perelman, Amy Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiuemei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F Keith Barker, Knud Andreas Jønsson, Warren Johnson, Klaus-Peter Koepfli, Stephen O'Brien, David Haussler, Oliver Ryder, Carsten Rahbek, Eske Willerslev, Gary Graves, Travis Glenn, John Mccormack, Dave Burt, Hans Ellegren, Per Alström, Scott Edwards, Alexandros Stamatakis, David Mindell, Joel Cracraft, Edward Braun, Tandy Warnow, Wang Jun, M Thomas P Gilbert, Guojie Zhang
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Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition
Claudia C. Weber, Bastien Boussau, Jonathan Romiguier, Erich D. Jarvis, H. Ellegren
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Statistical binning enables an accurate coalescent-based estimation of the avian tree
S. Mirarab, M. S. Bayzid, Bastien Boussau, T. Warnow
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Strepsiptera, Phylogenomics and the Long Branch Attraction Problem
Bastien Boussau, Z. Walton, Ja. Delgado, F. Collantes, L. Beani, Ij. Stewart, Sa. Cameron, Jb. Whitfield, Js. Johnston, P. Holland, D. Bachtrog, J. Kathirithamby, Jp. Huelsenbeck
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Probabilistic Graphical Model Representation in Phylogenetics
S. Höhna, Ta. Heath, Bastien Boussau
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Efficient Exploration of the Space of Reconciled Gene Trees.
Gergely J Szöllosi, Wojciech Rosikiewicz, Bastien Boussau, Eric Tannier, Vincent Daubin
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A Branch-Heterogeneous Model of Protein Evolution for Efficient Inference of Ancestral Sequences
M. Groussin, Bastien Boussau, Manolo Gouy
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Genome-scale coestimation of species and gene trees.
Bastien Boussau, Gergely J Szöllosi, L. Duret, Manolo Gouy, Eric Tannier, Vincent Daubin
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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution
Laurent Gueguen, Sylvain Gaillard, Bastien Boussau, Manolo Gouy, Mathieu Groussin, Nicolas C. Rochette, Thomas Bigot, David Fournier, Fanny Pouyet, Vincent Cahais, Aurelien Bernard, Celine Scornavacca, Benoit Nabholz, Annabelle Haudry, Loic Dachary, Nicolas Galtier, Khalid Belkhir, Julien Y. Dutheil