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Showing results 5401 to 5420 on 8431 in total
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Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs
Rui Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot
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Navigating in a Sea of Repeats in RNA-seq without Drowning
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
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Annotating arthropods genome to study and compare their metabolism: the ArthropodaCyc collection of Cyc databases powered by CycADS
Patrice Baa-Puyoulet, Augusto Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Federica Calevro, Marie-France Sagot, Hubert Charles, Toni Gabaldon, Stefano Colella
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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne E. Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot
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Rime: Repeat identification
Maria Federico, Pierre Peterlongo, Nadia Pisanti, Marie-France Sagot
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Amortized Õ(\textbarV)-Delay Algorithm for Listing Chordless Cycles in Undirected Graphs
R. Ferreira, R. Grossi, R. Rizzi, Gustavo Sacomoto, Marie-France Sagot
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« ArthropodaCyc » : une collection de bases de données enrichies à l’aide de CycADS pour étudier et comparer le métabolisme des arthropodes.
Patrice Baa-Puyoulet, Stefano Colella, Augusto Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Federica Calevro, Toni Gabaldon, Marie-France Sagot, Hubert Charles
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
Gustavo Akio Tominaga Sacomoto, Vincent Lacroix, Marie-France Sagot
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New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data
Alice Julien-Laferriere, Gustavo Sacomoto, Rayan Chikhi, Erwan Scaon, David P. Parsons, Marie-France Sagot, Pierre Peterlongo, Vincent Miele, Vincent Lacroix
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Telling Stories Fast
Michele Borassi, Pierluigi Crescenzi, Vincent Lacroix, Andrea Marino, Marie-France Sagot, Paulo Vieira Milreu
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Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers
João Alves, Cecilia Klein, Flávia Maia da Silva, André Costa-Martins, Myrna Serrano, Gregory Buck, Ana Tereza Vasconcelos, Marie-France Sagot, Marta Teixeira, Maria Cristina Motta, Erney Camargo
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Short and long-term genome stability analysis of prokaryotic genomes
Matteo Brilli, Pietro Liò, Vincent Lacroix, Marie-France Sagot
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Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses
Cecilia C Klein, João M P Alves, Myrna G Serrano, Gregory A Buck, Ana Tereza R Vasconcelos, Marie-France Sagot, Marta M G Teixeira, Erney P Camargo, Maria Cristina M Motta
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Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family
Maria Cristina Machado Motta, Allan Cezar de Azevedo Martins, Silvana Sant'Anna de Souza, Carolina Moura Costa Catta-Preta, Rosane Silva, Cecilia Coimbra Klein, Luiz Gonzaga Paula de Almeida, Oberdan de Lima Cunha, Luciane Prioli Ciapina, Marcelo Brocchi, Ana Cristina Colabardini, Bruna de Araujo Lima, Carlos Renato Machado, Célia Maria de Almeida Soares, Christian Macagnan Probst, Claudia Beatriz Afonso de Menezes, Claudia Elizabeth Thompson, Daniella Castanheira Bartholomeu, Daniela Fiori Gradia, Daniela Parada Pavoni, Edmundo C Grisard, Fabiana Fantinatti-Garboggini, Fabricio Klerynton Marchini, Gabriela Flávia Rodrigues-Luiz, Glauber Wagner, Gustavo Henrique Goldman, Juliana Lopes Rangel Fietto, Maria Carolina Elias, Maria Helena S Goldman, Marie-France Sagot, Maristela Pereira, Patrícia H Stoco, Rondon Pessoa de Mendonça-Neto, Santuza Maria Ribeiro Teixeira, Talles Eduardo Ferreira Maciel, Tiago Antônio de Oliveira Mendes, Turán P Ürményi, Wanderley de Souza, Sergio Schenkman, Ana Tereza Ribeiro de Vasconcelos
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The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc
Patrice Baa-Puyoulet, Augusto Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Toni Gabaldon, Marie-France Sagot, Hubert Charles, Stefano Colella
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Efficient Bubble Enumeration in Directed Graphs
Etienne E. Birmelé, Pierluigi Crescenzi, Rui Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Sacomoto, Marie-France Sagot
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Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.
Nuno D Mendes, Steffen Heyne, Ana T Freitas, Marie-France Sagot, Rolf Backofen
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Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.
Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot
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The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc
Patrice Baa-Puyoulet, Augusto F. Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Toni Gabaldon, Marie-France Sagot, Hubert Charles, Stefano Colella
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Minimum ratio cover of matrix columns by extreme rays of its induced cone
Alexandre da Silva Freire, Vicente Acuña, Pierluigi Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot