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Showing results 621 to 640 on 8567 in total
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Emergence and potential of high-throughput and integrative approaches in pathology
R Frutos, Alain Viari, Nathalie Vachiery, Frédéric Boyer, Thierry Lefrançois, D Martinez
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Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium
Nathalie Vachiery, G Maganga, Thierry Lefrançois, Yannick Kandassamy, Frederic Stachurski, H Adakal, C Ferraz, A Morgat, Albert Bensaid, Eric Coissac, Frédéric Boyer, J Demaille, Alain Viari, D Martinez, R Frutos
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PepLine: A Software Pipeline for High-Throughput Direct Mapping of Tandem Mass Spectrometry Data on Genomic Sequences
Myriam Ferro, Marianne Tardif, Erwan Reguer, Romain Cahuzac, Christophe Bruley, Thierry Vermat, Estelle Nugues, Marielle Vigouroux, Yves Vandenbrouck, Jérôme Garin, Alain Viari
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High throughput analysis of Ehrlichia ruminantium transcriptome: identification of genes involved in virulence
L Emboule, F Daigle, R Frutos, D Meyer, Alain Viari, Valérie Pinarello, S Christian, V Magnone, Bernard Mari, P Barbry, D Martinez, Thierry Lefrançois, Nathalie Vachiery
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Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium
Loic Emboulé, France Daigle, Damien F. Meyer, Bernard Mari, Valérie Pinarello, Christian Sheikboudou, Virginie Magnone, Roger Frutos, Alain Viari, Pascal Barbry, Dominique Martinez, Thierry Lefrancois, Nathalie Vachiery
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Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia
Veasna Duong, Cameron Simmons, Laurent Gavotte, Alain Viari, Sivuth Ong, Ngan Chantha, Niall J. Lennon, Bruce W. Birren, Sirenda Vong, Jeremy J. Farrar, Matthew R. Henn, Vincent Deubel, Roger Frutos, Philippe Buchy
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Biased mutational pattern and quasispecies hypothesis in H5N1 virus.
Ramona Alikiiteaga Gutiérrez, Alain Viari, Bernard Godelle, Roger Frutos, Philippe Buchy
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ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.
Tiayyba Riaz, Wasim Shehzad, Alain Viari, François Pompanon, Pierre Taberlet, Eric Coissac
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UniPathway: a resource for the exploration and annotation of metabolic pathways.
Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B Axelsen, Guillaume Keller, Amos Bairoch, Alan Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari
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Dynamic of H5N1 virus in Cambodia and emergence of a novel endemic sub-clade
San Sorn, Touch Sok, Sovann Ly, Sareth Rith, Nguyen Tung, Alain Viari, Laurent Gavotte, Davun Holl, Heng Seng, Nima Asgari, Beat Richner, Denis Laurent, Nora Chea, Veasna Duong, Tetsuya Toyoda, Chadwick Y. Yasuda, Paul Kitsutani, Paul Zhou, Sun Bing, V. Deubel, Ruben Donis, Roger Frutos, Philippe Buchy
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Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters
Veasna Duong, Matthew R. Henn, Cameron Simmons, Chantha Ngan, Bunthin Y, Laurent Gavotte, Alain Viari, Sivuth Ong, Rekol Huy, Niall J. Lennon, Sowath Ly, Sirenda Vong, Bruce W. Birren, Jeremy J. Farrar, Vincent Deubel, Roger Frutos, Philippe Buchy
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The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.
Adam Alexander Thil Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet
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[Big Data in biology].
Alain Viari
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Spatial modelling of plant diversity from high-throughput environmental dna sequence data
Angelika Studeny, Florence Forbes, Eric Coissac, Alain Viari, Celine Mercier, Lucie Zinger, Aurélie Bonin, Frédéric Boyer, Pierre Taberlet
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
Marcel Smid, F. Germán Rodríguez-González, Anieta M. Sieuwerts, Roberto Salgado, Wendy J. C. Prager-van der Smissen, Michelle van Der Vlugt-Daane, Anne van Galen, Serena Nik-Zainal, Johan Staaf, Arie B. Brinkman, Marc J. van de Vijver, Andrea L. Richardson, Aquila Fatima, Kim Berentsen, Adam Butler, Sancha Martin, Helen R. Davies, Reno Debets, Marion E. Meijer-Van Gelder, Carolien H. M. van Deurzen, Gaëtan Macgrogan, Gert G. G. M. van den Eynden, Colin Purdie, Alastair M. Thompson, Carlos Caldas, Paul N. Span, Peter T. Simpson, Sunil R. Lakhani, Steven van Laere, Christine Desmedt, Markus Ringnér, Stefania Tommasi, Jorunn Eyford, Anne Broeks, Anne Vincent-Salomon, P. Andrew Futreal, Stian Knappskog, Tari A King, Gilles Thomas, Alain Viari, Anita Langerød, Anne-Lise Børresen-Dale, Ewan Birney, Hendrik G. Stunnenberg, Mike Stratton, John A. Foekens, John W. M. Martens
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A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers
Anthony Ferrari, Anne Vincent-Salomon, Xavier Pivot, Anne-Sophie Sertier, Emile Thomas, Laurie Tonon, Sandrine Boyault, Eskeatnaf Mulugeta, Isabelle Treilleux, Gaëtan Macgrogan, Laurent Arnould, Janice Kielbassa, Vincent Le Texier, Hélène Blanché, Jean-François Deleuze, Jocelyne Jacquemier, Marie-Christine Mathieu, Frédérique Penault-Llorca, Frédéric Bibeau, Maria Mariani, Cécile Mannina, Jean-Yves Pierga, Olivier Trédan, Thomas Bachelot, Hervé Bonnefoi, Gilles Romieu, Pierre Fumoleau, Suzette Delaloge, Maria Rios, Jean-Marc Ferrero, Carole Tarpin, Catherine Bouteille, Fabien Calvo, Ivo Glynne Gut, Marta Gut, Sancha Martin, Serena Nik-Zainal, Michael R. Stratton, Iris Pauporté, Pierre Saintigny, Daniel Birnbaum, Alain Viari, Gilles Thomas
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences
Serena Nik-Zainal, Helen R. Davies, Johan Staaf, Manasa Ramakrishna, Dominik Glodzik, Xueqing Zou, Inigo Martincorena, Ludmil B. Alexandrov, Sancha Martin, David C. Wedge, Peter van Loo, Young Seok Ju, Marcel Smid, Arie B. Brinkman, Sandro Morganella, Miriam R. Aure, Ole Christian Lingjærde, Anita Langerød, Markus Ringnér, Sung-Min Ahn, Sandrine Boyault, Jane E. Brock, Anne Broeks, Adam Butler, Christine Desmedt, Luc Dirix, Serge Dronov, Aquila Fatima, John A. Foekens, Moritz Gerstung, Gerrit K. J. Hooijer, Se Jin Jang, David R. Jones, Hyung-Yong Kim, Tari A. King, Savitri Krishnamurthy, Hee Jin Lee, Jeong-Yeon Lee, Yilong Li, Stuart Mclaren, Andrew Menzies, Ville Mustonen, Sarah O’meara, Iris Pauporté, Xavier Pivot, Colin A. Purdie, Keiran Raine, Kamna Ramakrishnan, F. Germán Rodríguez-González, Gilles Romieu, Anieta M. Sieuwerts, Peter Simpson, Rebecca Shepherd, Lucy Stebbings, Olafur A. Stefansson, Jon Teague, Stefania Tommasi, Isabelle Treilleux, Gert G. van den Eynden, Peter Vermeulen, Anne Vincent-Salomon, Lucy Yates, Carlos Caldas, Laura Van’t Veer, Andrew Tutt, Stian Knappskog, Benita Kiat Tee Tan, Jos Jonkers, Åke Borg, Naoto T. Ueno, Christos Sotiriou, Alain Viari, P. Andrew Futreal, Peter J. Campbell, Paul N. Span, Steven van Laere, Sunil R. Lakhani, Jorunn E. Eyfjord, Alastair M. Thompson, Ewan Birney, Hendrik G. Stunnenberg, Marc J. van de Vijver, John W. M. Martens, Anne-Lise Børresen-Dale, Andrea L. Richardson, Gu Kong, Gilles Thomas, Michael R. Stratton
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HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
Helen Davies, Dominik Glodzik, Sandro Morganella, Lucy R Yates, Johan Staaf, Xueqing Zou, Manasa Ramakrishna, Sancha Martin, Sandrine Boyault, Anieta M Sieuwerts, Peter T Simpson, Tari A King, Keiran Raine, Jorunn E Eyfjord, Gu Kong, Åke Borg, Ewan Birney, Hendrik G Stunnenberg, Marc J van de Vijver, Anne Børresen-Dale, John W M Martens, Paul N Span, Sunil R Lakhani, Anne Vincent-Salomon, Christos Sotiriou, Andrew Tutt, Alastair M Thompson, Steven van Laere, Andrea L Richardson, Alain Viari, Peter J Campbell, Michael R Stratton, Serena Nik-Zainal
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Whole-Genome Sequencing Reveals Breast Cancers with Mismatch Repair Deficiency
Helen Davies, Sandro Morganella, Colin A. Purdie, Se Jin Jang, Elin Borgen, Hege Russnes, Dominik Glodzik, Xueqing Zou, Alain Viari, Andrea L. Richardson, Anne-Lise Børresen-Dale, Alastair Thompson, Jorunn E. Eyfjord, Gu Kong, Michael R. Stratton, Serena Nik-Zainal
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Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
Young Seok Ju, Inigo Martincorena, Moritz Gerstung, Mia Petljak, Ludmil B. Alexandrov, Raheleh Rahbari, David C. Wedge, Helen R. Davies, Manasa Ramakrishna, Anthony Fullam, Sancha Martin, Christopher Alder, Nikita Patel, Steve Gamble, Sarah O’meara, Dilip D. Giri, Torril Sauer, Sarah E. Pinder, Colin A. Purdie, Åke Borg, Henk Stunnenberg, Marc van de Vijver, Benita K. T. Tan, Carlos Caldas, Andrew Tutt, Naoto T. Ueno, Laura J. van ’t Veer, John W. M. Martens, Christos Sotiriou, Stian Knappskog, Paul N. Span, Sunil R. Lakhani, Jórunn Erla Eyfjörd, Anne-Lise Børresen-Dale, Andrea Richardson, Alastair M. Thompson, Alain Viari, Matthew E. Hurles, Serena Nik-Zainal, Peter J. Campbell, Michael R. Stratton