Stoneking Mark

Archaic mitochondrial DNA inserts in modern day nuclear genomes

Robert Bücking, Murray Cox, Georgi Hudjashov, Lauri Saag, Herawati Sudoyo, Mark Stoneking

BMC Genomics . 20 ( 1 ) : 1017

DOI: 10.1186/s12864-019-6392-8

2019

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Multiple Deeply Divergent Denisovan Ancestries in Papuans

Guy Jacobs, Georgi Hudjashov, Lauri Saag, Pradiptajati Kusuma, Chelzie Darusallam, Daniel Lawson...

Cell .

DOI: 10.1016/j.cell.2019.02.035

2019

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Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia

Nicolas Brucato, Verónica Fernandes, Pradiptajati Kusuma, Viktor Černý, Connie Mulligan, Pedro Soares...

Genome Biology and Evolution . 11 ( 3 ) : 748-758

DOI: 10.1093/gbe/evz028

2019

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The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola

Sandra Oliveira, Alexander Hübner, Anne-Maria Fehn, Teresa Aço, Fernanda Lages, Brigitte Pakendorf...

European Journal of Human Genetics . 27 ( 3 ) : 475-483

DOI: 10.1038/s41431-018-0304-2

2019

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Genetic structure and sex-biased gene flow in the history of southern African populations

Vladimir Bajić, Chiara Barbieri, Alexander Hübner, Tom Tom Güldemann, Christfried Naumann, Linda Gerlach...

American Journal of Physical Anthropology . 167 ( 3 ) : 656-671

DOI: 10.1002/ajpa.23694

2018

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Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa

Sandra Oliveira, Anne-Maria Fehn, Teresa Aço, Fernanda Lages, Magdalena Gayà-Vidal, Brigitte Pakendorf...

American Journal of Physical Anthropology . 165 ( 3 ) : 518-535

DOI: 10.1002/ajpa.23378

2018

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High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia

Leonardo Arias, Chiara Barbieri, Guillermo Barreto, Mark Stoneking, Brigitte Pakendorf

American Journal of Physical Anthropology . 165 ( 2 ) : 238-255

DOI: 10.1002/ajpa.23345

2018

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Strong selection during the last millennium for African ancestry in the admixed population of Madagascar

Denis Pierron, Margit Heiske, Harilanto Razafindrazaka, Veronica Pereda-Loth, Jazmin Sanchez, Omar Alva...

Nature Communications . 9 ( 1 ) : 932

DOI: 10.1038/s41467-018-03342-5

2018

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The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor

Nicolas Brucato, Verónica Fernandes, Stéphane Mazières, Pradiptajati Kusuma, Murray Cox, Joseph Wainaina Ng'Ang'A...

American Journal of Human Genetics . 102 ( 1 ) : 58-68

DOI: 10.1016/j.ajhg.2017.11.011

2018

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Cultural Innovations Influence Patterns of Genetic Diversity in Northwestern Amazonia

Leonardo Arias, Roland Schröder, Alexander Hübner, Guillermo Barreto, Mark Stoneking, Brigitte Pakendorf

Molecular Biology and Evolution . 35 ( 11 ) : 2719-2735

DOI: 10.1093/molbev/msy169

2018

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Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

Nguyen Thuy Duong, Enrico Macholdt, Nguyen Dang Ton, Leonardo Arias, Roland Schröder, Nguyen van Phong...

Scientific Reports . 8 ( 1 )

DOI: 10.1038/s41598-018-29989-0

2018

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Genomic landscape of human diversity across Madagascar

Denis Pierron, Margit Heiske, Harilanto Razafindrazaka, Ignace Rakoto, Nelly Rabetokotany, Bodo Ravololomanga...

Proceedings of the National Academy of Sciences of the United States of America . 114 ( 32 ) : E6498-E6506

DOI: 10.1073/pnas.1704906114

2017

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The Complex Admixture History and Recent Southern Origins of Siberian Populations

Irina Pugach, Rostislav Matveev, Viktor Spitsyn, Sergey Makarov, Innokentiy Novgorodov, Vladimir Osakovsky...

Molecular Biology and Evolution . 33 ( 7 ) : 1777-1795

DOI: 10.1093/molbev/msw055

2016

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Refining the Y chromosome phylogeny with southern African sequences

Chiara Barbieri, Alexander Hübner, Enrico Macholdt, Shengyu Ni, Sebastian Lippold, Roland Schröder...

Human Genetics . 135 ( 5 ) : 541 - 553

DOI: 10.1007/s00439-016-1651-0

2016

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A genomic history of Aboriginal Australia

Anna-Sapfo Malaspinas, Michael Westaway, Craig Muller, Vitor Hugo Sousa, Oscar Lao, Isabel Alves...

Nature . 538 ( 7624 ) : 207-214

DOI: 10.1038/nature18299

2016

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Tracing Pastoralist Migrations to Southern Africa with Lactase Persistence Alleles

Enrico Macholdt, Vera Lede, Chiara Barbieri, Sununguko Mpoloka, Hua Chen, Montgomery Slatkin...

Current Biology - CB . 24 ( 8 ) : 875-879

DOI: 10.1016/j.cub.2014.03.027

2014

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Ancient west Eurasian ancestry in southern and eastern Africa

Joseph Pickrell, Nick Patterson, Po-Ru Loh, Mark Lipson, Bonnie Berger, Mark Stoneking...

Proceedings of the National Academy of Sciences of the United States of America . 111 ( 7 ) : 2632-2637

DOI: 10.1073/pnas.1313787111

2014

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Unraveling the complex maternal history of southern African Khoisan populations

Chiara Barbieri, Tom Güldemann, Linda Gerlach, Falko Berthold, Hirosi Nakagawa, Sununguko Mpoloka...

American Journal of Physical Anthropology . 153 ( 3 ) : 435-448

DOI: 10.1002/ajpa.22441

2014

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New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa

Enrico Macholdt, Montgomery Slatkin, Brigitte Pakendorf, Mark Stoneking

American Journal of Physical Anthropology . 156 ( 4 ) : 661-664

DOI: 10.1002/ajpa.22675

2014

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Migration and Interaction in a Contact Zone: mtDNA Variation among Bantu-Speakers in Southern Africa

Chiara Barbieri, Mário Vicente, Sandra Oliveira, Koen Bostoen, Jorge Rocha, Mark Stoneking...

PLoS ONE . 9 ( 6 ) : e99117

DOI: 10.1371/journal.pone.0099117

2014

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Ancient Substructure in Early mtDNA Lineages of Southern Africa

Chiara Barbieri, Mário Vicente, Jorge Rocha, Sununguko w. Mpoloka, Mark Stoneking, Brigitte Pakendorf

American Journal of Human Genetics . 92 ( 2 ) : 285-292

DOI: 10.1016/j.ajhg.2012.12.010

2013

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Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands

F. Delfin, S. Myles, Y. Choi, D. Hughes, R. Illek, M. van Oven...

Molecular Biology and Evolution . 29 ( 2 ) : 545-564

DOI: 10.1093/molbev/msr186

2012

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Bringing together linguistic and genetic evidence to test the Bantu expansion

C. de Filippo, K. Bostoen, M. Stoneking, Brigitte Pakendorf

Proceedings of the Royal Society B: Biological Sciences . 279 ( 1741 ) : 3256-3263

DOI: 10.1098/rspb.2012.0318

2012

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The genetic prehistory of southern Africa

Joseph Pickrell, Nick Patterson, Chiara Barbieri, Falko Berthold, Linda Gerlach, Tom Güldemann...

Nature Communications . 3 : 1143

DOI: 10.1038/ncomms2140

2012

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High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Ivan Nasidze, Anna Schönberg, Christoph Theunert, Mingkun Li, Mark Stoneking

European Journal of Human Genetics .

DOI: 10.1038/ejhg.2011.62

2011

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Y-Chromosomal Variation in Sub-Saharan Africa: Insights Into the History of Niger-Congo Groups

C. de Filippo, C. Barbieri, M. Whitten, S. Mpoloka, E. Gunnarsdottir, K. Bostoen...

Molecular Biology and Evolution . 28 ( 3 ) : 1255-1269

DOI: 10.1093/molbev/msq312

2011

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Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra

Ellen Dröfn Gunnarsdóttir, Madhusudan Nandineni, Mingkun Li, Sean Myles, David Gil, Brigitte Pakendorf...

Nature Communications . 2 : 228

DOI: 10.1038/ncomms1235

2011

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Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia

Cesare de Filippo, Patricia Heyn, Lawrence Barham, Mark Stoneking, Brigitte Pakendorf

American Journal of Physical Anthropology . 141 ( 3 ) : 382-394

DOI: 10.1002/ajpa.21155

2010

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Genetic Admixture History of Eastern Indonesia as Revealed by Y-Chromosome and Mitochondrial DNA Analysis

S. Mona, K. Grunz, S. Brauer, Brigitte Pakendorf, L. Castri, H. Sudoyo...

Molecular Biology and Evolution . 26 ( 8 ) : 1865-1877

DOI: 10.1093/molbev/msp097

2009

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Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis.

Patricia Balaresque, Georgina Bowden, Emma Parkin, Ghada Omran, Evelyne Heyer, Lluis Quintana-Murci...

Human Mutation . 29 ( 10 ) : 1171-80

DOI: 10.1002/humu.20757

2008

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Publications

Archaic mitochondrial DNA inserts in modern day nuclear genomes

Multiple Deeply Divergent Denisovan Ancestries in Papuans

Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia

The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola

Genetic structure and sex-biased gene flow in the history of southern African populations

Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa

High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia

Strong selection during the last millennium for African ancestry in the admixed population of Madagascar

The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor

Cultural Innovations Influence Patterns of Genetic Diversity in Northwestern Amazonia

Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia

Genomic landscape of human diversity across Madagascar

The Complex Admixture History and Recent Southern Origins of Siberian Populations

Refining the Y chromosome phylogeny with southern African sequences

A genomic history of Aboriginal Australia

Tracing Pastoralist Migrations to Southern Africa with Lactase Persistence Alleles

Ancient west Eurasian ancestry in southern and eastern Africa

Unraveling the complex maternal history of southern African Khoisan populations

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa

Migration and Interaction in a Contact Zone: mtDNA Variation among Bantu-Speakers in Southern Africa

Ancient Substructure in Early mtDNA Lineages of Southern Africa

Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands

Bringing together linguistic and genetic evidence to test the Bantu expansion

The genetic prehistory of southern Africa

High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Y-Chromosomal Variation in Sub-Saharan Africa: Insights Into the History of Niger-Congo Groups

Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra

Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia

Genetic Admixture History of Eastern Indonesia as Revealed by Y-Chromosome and Mitochondrial DNA Analysis

Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis.