Lobry Jean

Oak masting drivers vary between populations depending on their climatic environments

Emilie Fleurot, Jean R Lobry, Vincent Boulanger, François Débias, Camille Mermet-Bouvier, Thomas Caignard...

Current Biology - CB . 33 ( 6 ) : 1117-1124.e4

DOI: 10.1016/j.cub.2023.01.034

2023

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The CV is dead, long live the CV !

Jean R Lobry, Marie‐claude Bel‐venner, Michał Bogdziewicz, Andrew Hacket‐pain, Samuel Venner

Methods in Ecology and Evolution .

DOI: 10.1111/2041-210X.14197

2023

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Enseigner les recueil des données : explorer la variabilité biologique ... au chaud, dans une salle de cours

Anne-Béatrice Dufour, Jean R Lobry, Isabelle Amat

Statistique et Enseignement . 8 ( 2 ) : 79-85

2017

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Estimating the Number of Contributors to Forensic DNA Mixtures: Does Maximum Likelihood Perform Better Than Maximum Allele Count?

Hinda Haned, Laurent Pène, J.R. Lobry, Anne-Béatrice Dufour, D. Pontier

Journal of Forensic Sciences . 56 ( 1 ) : 23-28

DOI: 10.1111/j.1556-4029.2010.01550.x

2011

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Serotyping of Toxoplasma gondii: striking homogeneous pattern between symptomatic and asymptomatic infections within Europe and South America.

Stéphane Morisset, François Peyron, Jean R Lobry, Justus Garweg, Josette Ferrandiz, Karine Musset...

Microbes and Infection . 10 ( 7 ) : 742-7

DOI: 10.1016/j.micinf.2008.04.001

2008

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An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations

H. Devillers, J.R. Lobry, F. Menu

Journal of Theoretical Biology . 255 : 307-315

2008

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From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals

Anne-Béatrice Dufour, J.R. Lobry

Biométrie Humaine et Anthropologie - revue de la Société de biométrie humaine . 26 : 33-39

2008

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A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A. Necşulea, J.R. Lobry

Molecular Biology and Evolution . 24 : 2169-2179

2007

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A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A. Necşulea, J.R. Lobry

incollection . 7 : 379-381

2007

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SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis

D. Charif, J.R. Lobry

incollection . -- : 207-232

2007

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Serotyping of Toxoplasma gondii in chronically infected pregnant women: predominance of type II in Europe and types I and III in Colombia (South America).

François Peyron, Jean R Lobry, Karine Musset, Josette Ferrandiz, Jorge Enrique Gomez-Marin, Eskild Petersen...

Microbes and Infection . 8 ( 9-10 ) : 2333-40

DOI: 10.1016/j.micinf.2006.03.023

2006

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UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes

L. Palmeira, Laurent Guéguen, J.R. Lobry

Molecular Biology and Evolution . 23 : 2214-2219

2006

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Serotyping of Toxoplasma gondii in chronically infected pregnant women : predominance of type II in Europe and types I and III in Colombia (South America)

F. Peyron, J.R. Lobry, K. Musset, J. Ferrandiz, J.E. Gómez-Marín, E. Petersen...

Microbes and Infection . 8 : 2333-2340

2006

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Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

J.R. Lobry, A. Necşulea

Gene . 385 : 128-136

2006

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No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

M. Sémon, J.R. Lobry, L. Duret

Molecular Biology and Evolution . 23 : 523-529

2006

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Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major

A. Necşulea, J.R. Lobry

Gene . 385 : 28-40

2006

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Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

O. Zagordi, J.R. Lobry

Gene . 347 : 175-182

2005

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Online synonymous codon usage analyses with the ade4 and seqinR packages

D. Charif, J. Thioulouse, J.R. Lobry, G. Perrière

Bioinformatics . 21 : 545-547

2005

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Life history traits and genome structure: aerobiosis and G+C content in bacteria

J.R. Lobry

Lecture Notes in Computer Science . 3039 : 679-686

2004

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Forcing reversibility in the no strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

O. Zagordi, J. R. Lobry

2004

Pré-publication

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Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

J.R. Lobry, D. Chessel

Journal of Applied Genetics . 44 : 235-261

2003

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Polarisation of prokaryotic chromosomes

J.R. Lobry, J.M. Louarn

Current Opinion in Microbiology . 6 : 101-108

2003

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Asymmetric directional mutation pressures in bacteria

J.R. Lobry, N. Sueoka

Genome Biology . 26 : 1-14

2002

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Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

A.C. Frank, J.R. Lobry

Bioinformatics . 16 : 560-561

2000

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Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids

M. Picardeau, J.R. Lobry, B.J. Hinnebusch

Genome Research . 10 : 1594-1604

2000

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Genomic landscapes

Jean R Lobry

Microbiology Today . 26 : 164-165

1999

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Intra-strand biases in bacteriophage T4 genome

T. Kano-Sueoka, J.R. Lobry, N. Sueoka

Gene . 238 : 59-64

1999

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Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome

M. Picardeau, J.R. Lobry, B.J. Hinnebusch

Molecular Microbiology . 32 : 437-445

1999

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Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant

J.R. Lobry, C. Lobry

Molecular Biology and Evolution . 16 : 719-723

1999

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Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

A.C. Frank, J.R. Lobry

Gene . 238 : 65-77

1999

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Publications

Oak masting drivers vary between populations depending on their climatic environments

The CV is dead, long live the CV !

Enseigner les recueil des données : explorer la variabilité biologique ... au chaud, dans une salle de cours

Estimating the Number of Contributors to Forensic DNA Mixtures: Does Maximum Likelihood Perform Better Than Maximum Allele Count?

Serotyping of Toxoplasma gondii: striking homogeneous pattern between symptomatic and asymptomatic infections within Europe and South America.

An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations

From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals

A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis

Serotyping of Toxoplasma gondii in chronically infected pregnant women: predominance of type II in Europe and types I and III in Colombia (South America).

UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes

Serotyping of Toxoplasma gondii in chronically infected pregnant women : predominance of type II in Europe and types I and III in Colombia (South America)

Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major

Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

Online synonymous codon usage analyses with the ade4 and seqinR packages

Life history traits and genome structure: aerobiosis and G+C content in bacteria

Forcing reversibility in the no strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

Polarisation of prokaryotic chromosomes

Asymmetric directional mutation pressures in bacteria

Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids

Genomic landscapes

Intra-strand biases in bacteriophage T4 genome

Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome

Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms