Quantitative and Evolutionary Ecology of Communities Group
Thioulouse Jean
Directeur de recherche
CNRS
Mendel Building, 1st floor. Office 11.048
Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/
Reproducible research : A series of paper with graphs and computations reproducibility:
https://jthome.thioulouse.fr/Reproducible_Research/
https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/
Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO
ORCID ID: https://orcid.org/0000-0001-7664-05980
IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse
ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1
Evol. Biol. 2021 paper reproducibility:
Overcoming the Spurious Groups Problem in Between-Group PCA
Research activity
My research activities are centred around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.
The ade4 package for R :ade4
The adegraphics package for R :adegraphics
The ade4TkGUI package for R :ade4TkGUI
Publications
Display of 31 to 60 publications on 153 in total
Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative
Sustainable Agriculture Volume 2 . 978-94-007-0393-3 : 857-865
Book chapter
see the publicationBiogeographical patterns of soil molecular microbial biomass
Ecology of soil microorganisms : microbes as important drivers of soil processes . : 1 p.
Conference paper
see the publicationDiversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae
Journal of Medical Entomology . 48 : 788-796
Journal article
see the publicationInsertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris
Journal of Clinical Microbiology . 49 ( 1 ) : 315-324
DOI: 10.1128/JCM.01261-10
Journal article
see the publicationSoil fungal communities ecology: a biogeographical approach
Ecology of soil Microorganisms Conference . : 1 p.
Conference paper
see the publicationBiogeographical patterns of soil microbial communities at the scale of French metropolitan territory
13. International Symposium on Microbial Ecology ISME 13 . : 1 p.
Conference paper
see the publicationBiogeography of soil microbial communities: a review and a description of the ongoing french national initiative
Agronomy for Sustainable Development . 30 ( 2 ) : 359-365
DOI: 10.1051/agro/2009033
Journal article
see the publicationBiogéographie Microbienne: mythe ou réalité ?
Ecologie 2010 . : n.p.
Conference paper
see the publicationOnline Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data
The R Journal . 2 ( 1 ) : 44-52
Journal article
see the publicationAphylogenomic analysis of bacterial helix^turn^helix transcription factors
FEMS Microbiology Reviews . 33 : 411-429
Journal article
see the publicationDistribution et déterminisme de la diversité des communautés de champignons telluriques à l'échelle de trois régions françaises
4ème colloque de l'Association Francophone d'Ecologie Microbienne : le livre des résumés . : 91
Conference paper
see the publicationControlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia
Soil Biology and Biochemistry . 41(6) : 1245-1252
Journal article
see the publicationBiogeographical patterns of soil bacterial communities
Environmental Microbiology Reports . 1 ( 4 ) : 251 - 255
Journal article
see the publicationMonitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas
incollection . -- : 443-450
Journal article
see the publicationPatterns biogéographiques de la diversité bactérienne des sols à l'échelle du territoire national
Congrès AFEM (Association Francophone pour l'Ecologie Microbienne . : n.p.
Conference paper
see the publicationMicrobial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)
BAGECO10 .
Conference paper
see the publicationPrédiction des propriétés du sol à l’échelle nationale à partir des données du RMQS : Exemple des Éléments Trace Métalliques
10. Journées d'Etude des Sols .
Conference paper
see the publicationDiversité des communautés microbiennes telluriques à l'échelle du territoire national
Journées d'Etude des Sols . : 151-152
Conference paper
see the publicationECOMIC-RMQS : biogéographie microbienne à l’échelle de la France. Etat d’avancement et premiers résultats
Étude et Gestion des Sols . 16 ( 3-4 ) : 219-231
Journal article
see the publicationEcomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France
4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) . : 1 p.
Conference paper
see the publicationEcomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France
4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) . : 1 p.
Conference paper
see the publicationDiversité des communautés microbiennes telluriques à l'échelle du territoire national
Journées d'Etude des Sols . : 151-152
Conference paper
see the publicationRhizosphere microbiota interfers with plant-plant interactions
Plant and Soil . ( 321 ) : 259-278
Journal article
see the publicationMultivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data
Science of the Total Environment . 407 : 5644-5652
Journal article
see the publicationResponses of Pinus halepensis growth soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation
Plant and Soil . 320 (1-2) : 169-179
Journal article
see the publicationResponses of Pinus halepensis growth, soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation.
Plant and Soil . 320 : 169-179
Journal article
see the publicationMultivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data
Science of the Total Environment . 407 : 5644–5652
Journal article
see the publicationThe exotic legume tree species Acacia holosericea alters microbial soil functionalities and the structure of the arbuscular mycorrhizal community
Applied and Environmental Microbiology . 74 : 1485-1493
Journal article
see the publicationMicrobial-biogeography of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)
Eurosoil 2008 Book of Abstracts . : 59-60
Conference paper
see the publicationBacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting
Research in Microbiology . 160 ( 1 ) : 63-70
Journal article
see the publication