COEVOL Multi-Scale Coevolution

The Cocoon Group

Tannier Eric

Directeur de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 26 23 44 74

Email

 

Researcher in future studies, specializing in the links between science and society

(after research in mathematics, computer science, biology, history, and teaching research ethics)


Research environments :

- Inria, Semis team

- Botascopia (supported by the ANR Sciences avec et pour la société, “Flores”, by the ANR “Flowers”, and by the PEPR “Agroécologie et Numérique”, Cobreeding project)

- Evoluthon (supported by ANR Evoluthon)

- Santé commune, supported by Shapemed


Teaching :

- Video Research Ethics course (Masters and PhD), Video 1 and Video 2, Scientific Integrity Part 1, Part 2, Part 3

- Research Ethics in slides


Conferences and workshops :

- The role of research in the Anthropocene (open university)

- The rebound effects of bioinformatics (M2, research seminar)

- Re-appropriating knowledge production and available intellectual property tools

- Places of anticipation

- The disappearance of technology and conviviality

- Science, Environment and Society Workshop

- Doctoral oaths workshops


Responsibilities - Presentations :

- Head of the Inria Semis team

- Member of the scientific committee of the Boutique des Sciences

- Co-founder and editor of Peer Community in Mathematical and Computational Biology

- Member of the “Formation spécialisée de site” of the Inria Lyon center, committee dedicated to working conditions

- Fabrique des Questions Simples, laboratory incubator for research into the Anthropocene

- Scientific advice for the game “empreinte du numérique” by l'arbre des connaissances

 

Publications

Display of 1 to 30 publications on 123 in total

The Silene latifolia genome and its giant Y chromosome

Carol Moraga, Catarina Branco, Quentin Rougemont, Paris Veltsos, Pavel Jedlička, Aline Muyle...

Science . 387 ( 6734 ) : 630-636

DOI: 10.1126/science.adj7430

Journal article

see the publication

Aevol 4b: Bridging the gap between artificial life and bioinformatics

Hugo Daudey, David P Parsons, David P. Parsons, Eric Tannier, Vincent Daubin, Bastien Boussau...

ALIFE 2024 - International Conference for Artificial Life . : 41-49

DOI: 10.1162/isal_a_00716

Conference paper

see the publication

Response to “On the impact of incomplete taxon sampling on the relative timing of gene transfer events”

Théo Tricou, Eric Tannier, Damien de Vienne

PLoS Biology . 22 ( 3 ) : e3002557

DOI: 10.1371/journal.pbio.3002557

Journal article

see the publication

Approche globale des éthiques dans les relations sociétés/nature

Rémi Beau, Catherine Aubertin, Annabelle Aish, Anne Atlan, Sébastien Barot, Olivier Barrière...

: 211-219

Report

see the publication

Back to the trees: Identifying plants with Human Intelligence

Simon Castellan, Jos Käfer, Eric Tannier

LIMITS 2023 - Ninth Workshop on Computing within Limits . : 1-11

DOI: 10.21428/bf6fb269.265c52ce

Conference paper

see the publication

Se réapproprier la production de connaissance

Alexandre Monnin, Eric Tannier, Maël Thomas

Analyse Opinion Critique . : https://aoc.media/opinion/2023/05/17/se-reapproprier-la-production-de-connaissance/

Journal article

see the publication

PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets

Aurore Comte, Théo Tricou, Eric Tannier, Julien Joseph, Aurélie Siberchicot, Simon Penel...

Molecular Biology and Evolution . 40 ( 11 ) : msad234

DOI: 10.1093/molbev/msad234

Journal article

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Host-symbiont-gene phylogenetic reconciliation

Hugo Menet, Alexia Nguyen Trung, Vincent Daubin, Eric Tannier

Peer Community Journal . : 1-22

DOI: 10.24072/pcjournal.273

Journal article

see the publication

The crisis of the scientific mind : an investigation, a tragedy and a collective redistribution of roles

Eric Tannier, Vincent Daubin, Sophie Quinton

Les Cahiers de Framespa : e-Storia . ( 40 )

DOI: 10.4000/framespa.13150

Journal article

see the publication

GOntact: using chromatin contacts to infer Gene Ontology enrichments for cis -regulatory elements

Alexandre Laverré, Eric Tannier, Philippe Veber, Anamaria Necsulea

DOI: 10.1101/2022.06.13.495495

Preprint

see the publication

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier

Bioinformatics . 38 ( 8 ) : 2350–2352

DOI: 10.1093/bioinformatics/btac062

Journal article

see the publication

Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness

Alexandre Laverré, Eric Tannier, Anamaria Necsulea

Genome Research . 32 ( 2 ) : 280-296

DOI: 10.1101/gr.275901.121

Journal article

see the publication

Ghost lineages highly influence the interpretation of introgression tests

Théo Tricou, Eric Tannier, Damien M. de Vienne

Systematic Biology . 71 ( 5 ) : 1147–1158

DOI: 10.1093/sysbio/syac011

Journal article

see the publication

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

Manolo Gouy, Eric Tannier, Nicolas Comte, David Parsons

Multiple Sequence Alignment . 2231 : 241-260

DOI: 10.1007/978-1-0716-1036-7_15

Book chapter

see the publication

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte, Benoît Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin...

Bioinformatics . 36 ( 18 ) : 4822-4824

DOI: 10.1093/bioinformatics/btaa615

Journal article

see the publication

Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics

Eric Tannier, Adelme Bazin, Adrián Davín, Laurent Guéguen, Sèverine Bérard, Cedric Chauve

Phylogenetics in the Genomic Era . : 2.5:1--2.5:19

Book chapter

see the publication

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Robert Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten Reijnders...

BMC Biology . 18 ( 1 ) : 1-20

DOI: 10.1186/s12915-019-0728-3

Journal article

see the publication

L'informatique les pieds sur Terre

Eric Tannier

Interstices .

Journal article

see the publication

Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages

Adrian A Davin, Theo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J Szöllosi

Bioinformatics .

DOI: 10.1093/bioinformatics/btz710

Journal article

see the publication

Sciences, Environnements et Sociétés

Françoise Berthoud, Pascal Guitton, Laurent Lefèvre, Sophie Quinton, Antoine Rousseau, Jacques Sainte-Marie...

Report

see the publication

Gene tree reconciliation including transfers with replacement is NP-hard and FPT

Damir Hasic, Eric Tannier

Journal of Combinatorial Optimization . 38 ( 2 ) : 502–544

DOI: 10.1007/s10878-019-00396-z

Journal article

see the publication

Gene transfers can date the tree of life

Adrián Davín, Eric Tannier, Tom A Williams, Bastien Boussau, Vincent Daubin, Gergely Szöllősi

Nature Ecology & Evolution . 2 ( 5 ) : 904-909

DOI: 10.1038/s41559-018-0525-3

Journal article

see the publication

Théorie des codes - 3e édition

Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette

9782100781096 : 416

Book

see the publication

RecPhyloXML: a format for reconciled gene trees

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul Bansal, Vincent Berry...

Bioinformatics . 34 ( 21 ) : 3646-3652

DOI: 10.1093/bioinformatics/bty389

Journal article

see the publication