COEVOL Multi-Scale Coevolution

The Cocoon Group

Tannier Eric

Directeur de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 26 23 44 74

Email

Chercheur en biologie computationnelle, évolution, liens sciences-sociétés, permaculture

 

Recherches :

- Thèses de Alexandre Laverré (avec Anouk Necsulea), Théo Tricou (avec Damien de Vienne), Hugo Menet (avec Vincent Daubin)

- Action exploratoire "Community Garden Book" (équipe projet Inria Beagle)

- Fabrique des Questions Simples, laboratoire incubateur de recherches dans l'anthropocène

 

Enseignements :

- Cours M1 bioinformatique MADG

- Cours Ethique (Master et Doctorat), Video 1 et Video 2, Intégrité Scientifique Partie 1, Partie 2, Partie 3

- Atelier Sciences Environnements Sociétés

 

Responsabilités - Animations :

- Membre du comité scientifique de la Plateforme Resetis

- Membre du comité scientifique de la boutique des sciences

- Co-fondateur de Peer Community in Mathematical and Computational Biology

Publications

Display of 1 to 30 publications on 114 in total

A hapless mathematical contribution to biology: Chromosome inversions in Drosophila 1937-1941

Eric Tannier

History and Philosophy of the Life Sciences .

Journal article

see the publication

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier

Bioinformatics . : 1-3

DOI: 10.1093/bioinformatics/btac062

Journal article

see the publication

Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness

Alexandre Laverré, Eric Tannier, Anamaria Necsulea

Genome Research . 32 ( 2 ) : 280-296

DOI: 10.1101/gr.275901.121

Journal article

see the publication

Ghost lineages highly influence the interpretation of introgression tests

Théo Tricou, Eric Tannier, Damien M. de Vienne

Systematic Biology . 71 ( 5 ) : 1147–1158

DOI: 10.1093/sysbio/syac011

Journal article

see the publication

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

Manolo Gouy, Eric Tannier, Nicolas Comte, David Parsons

Multiple Sequence Alignment . 2231 : 241-260

DOI: 10.1007/978-1-0716-1036-7_15

Book chapter

see the publication

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte, Benoît Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin...

Bioinformatics . 36 ( 18 ) : 4822-4824

DOI: 10.1093/bioinformatics/btaa615

Journal article

see the publication

Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics

Eric Tannier, Adelme Bazin, Adrián Davín, Laurent Guéguen, Sèverine Bérard, Cedric Chauve

Phylogenetics in the Genomic Era . : 2.5:1--2.5:19

Book chapter

see the publication

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Robert Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten Reijnders...

BMC Biology . 18 ( 1 ) : 1-20

DOI: 10.1186/s12915-019-0728-3

Journal article

see the publication

L'informatique les pieds sur Terre

Eric Tannier

Interstices .

Other publication

see the publication

Sciences, Environnements et Sociétés

Françoise Berthoud, Pascal Guitton, Laurent Lefèvre, Sophie Quinton, Antoine Rousseau, Jacques Sainte-Marie...

Report

see the publication

Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages

Adrian A Davin, Theo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J Szöllosi

Bioinformatics .

DOI: 10.1093/bioinformatics/btz710

Journal article

see the publication

Gene tree reconciliation including transfers with replacement is NP-hard and FPT

Damir Hasic, Eric Tannier

Journal of Combinatorial Optimization . 38 ( 2 ) : 502–544

DOI: 10.1007/s10878-019-00396-z

Journal article

see the publication

Gene transfers can date the tree of life

Adrián Davín, Eric Tannier, Tom A Williams, Bastien Boussau, Vincent Daubin, Gergely Szöllősi

Nature Ecology & Evolution . 2 ( 5 ) : 904-909

DOI: 10.1038/s41559-018-0525-3

Journal article

see the publication

Théorie des codes - 3e édition

Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette

9782100781096 : 416

Book

see the publication

RecPhyloXML: a format for reconciled gene trees

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul Bansal, Vincent Berry...

Bioinformatics . 34 ( 21 ) : 3646-3652

DOI: 10.1093/bioinformatics/bty389

Journal article

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Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cedric Chauve, Sèverine Bérard

BMC Genomics . 19 ( S2 ) : 1-15

DOI: 10.1186/s12864-018-4466-7

Journal article

see the publication

Algorithms for computing the double cut and join distance on both gene order and intergenic sizes

Guillaume Fertin, Géraldine Jean, Eric Tannier

Algorithms for Molecular Biology . 12 : 16 (11 pages)

DOI: 10.1186/s13015-017-0107-y

Journal article

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Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses

Edwin Jacox, Mathias Weller, Eric Tannier, Celine Scornavacca

Bioinformatics . 33 ( 7 ) : 980-987

DOI: 10.1093/bioinformatics/btw778

Journal article

see the publication

DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

Wandrille Duchemin, Yoann Anselmetti, Murray Patterson, Yann Ponty, Sèverine Bérard, Cedric Chauve...

Genome Biology and Evolution . 9 ( 5 ) : 1312-1319

DOI: 10.1093/gbe/evx069

Journal article

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Comparative Methods for Reconstructing Ancient Genome Organization

Yoann Anselmetti, Nina Luhmann, Sèverine Bérard, Eric Tannier, Cedric Chauve

Comparative Genomics: Methods and Protocols . : 343 - 362

DOI: 10.1007/978-1-4939-7463-4_13

Book chapter

see the publication

MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Cédric Chauve, Akbar A Rafiey, Adrian A Davin, Celine Scornavacca, Philippe Veber, Bastien Boussau...

DOI: 10.1101/127548

Other publication

see the publication

Nucleotide, gene and genome evolution : a score to bind them all

Wandrille Duchemin, Vincent Daubin, Eric Tannier

Journées Ouvertes Biologie Informatique Mathématiques .

Conference paper

see the publication

Dating with transfers

Adrián Davín, Gergely J Szöllosi, Eric Tannier, Bastien Boussau, Vincent Daubin

Journées Ouvertes Biologie Informatique Mathématiques .

Conference paper

see the publication