COEVOL Multi-Scale Coevolution

The Cocoon Group

Tannier Eric

Directeur de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 330426234474

Email

Chercheur en biologie computationnelle, évolution, liens sciences-sociétés, permaculture

 

Recherches :

- Thèses de Alexandre Laverré (avec Anouk Necsulea), Théo Tricou (avec Damien de Vienne), Hugo Menet (avec Vincent Daubin)

- Action exploratoire "Community Garden Book" (équipe projet Inria Beagle)

- Fabrique des Questions Simples, laboratoire incubateur de recherches dans l'anthropocène

 

Enseignements :

- Cours M1 bioinformatique MADG

- Cours Ethique (Master et Doctorat), Video 1 et Video 2, Intégrité Scientifique Partie 1, Partie 2, Partie 3

- Atelier Sciences Environnements Sociétés

 

Responsabilités - Animations :

- Membre du comité scientifique de la Plateforme Resetis

- Membre du comité scientifique de la boutique des sciences

- Co-fondateur de Peer Community in Mathematical and Computational Biology

Publications

Display of 1 to 30 publications on 111 in total

Phylogenetic reconciliation

Hugo Menet, Vincent Daubin, Eric Tannier

Preprint

see the publication

The curious case of a hapless mathematical contribution to biology

Eric Tannier

Preprint

see the publication

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

Manolo Gouy, Eric Tannier, Nicolas Comte, David Parsons

Multiple Sequence Alignment . 2231 : 241-260

DOI: 10.1007/978-1-0716-1036-7_15

Book chapter

see the publication

L'informatique les pieds sur Terre

Eric Tannier

Interstices .

Other publication

see the publication

La fin d'un tout petit monde

Eric Tannier

Binaire .

Other publication

see the publication

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Robert Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten Reijnders...

BMC Biology . 18 ( 1 ) : 1-20

DOI: 10.1186/s12915-019-0728-3

Journal article

see the publication

Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics

Eric Tannier, Adelme Bazin, Adrián Davín, Laurent Guéguen, Sèverine Bérard, Cedric Chauve

Phylogenetics in the Genomic Era . : 2.5:1--2.5:19

Book chapter

see the publication

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte, Benoît Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin...

Bioinformatics . 36 ( 18 ) : 4822-4824

DOI: 10.1093/bioinformatics/btaa615

Journal article

see the publication

Sciences, Environnements et Sociétés

Françoise Berthoud, Pascal Guitton, Laurent Lefèvre, Sophie Quinton, Antoine Rousseau, Jacques Sainte-Marie...

Report

see the publication

Quand les branches de l’arbre du vivant s’entremêlent

Eric Tannier, Bastien Boussau, Vincent Daubin

Pour la science .

Journal article

see the publication

Gene tree reconciliation including transfers with replacement is NP-hard and FPT

Damir Hasic, Eric Tannier

Journal of Combinatorial Optimization . 38 ( 2 ) : 502–544

DOI: 10.1007/s10878-019-00396-z

Journal article

see the publication

Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages

Adrian Davin, Theo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J Szöllosi

Bioinformatics .

DOI: 10.1093/bioinformatics/btz710

Journal article

see the publication

Théorie des codes - 3e édition

Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette

9782100781096 : 416

Book

see the publication

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cedric Chauve, Sèverine Bérard

BMC Genomics . 19 ( S2 ) : 1-15

DOI: 10.1186/s12864-018-4466-7

Journal article

see the publication

Comparative Methods for Reconstructing Ancient GenomeOrganization

Yoann Anselmetti, Nina Luhmann, Sèverine Bérard, Eric Tannier, Cedric Chauve

Comparative Genomics: Methods and Protocols .

Book chapter

see the publication

RecPhyloXML: a format for reconciled gene trees

Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul Bansal, Vincent Berry...

Bioinformatics . 34 ( 21 ) : 3646-3652

DOI: 10.1093/bioinformatics/bty389

Journal article

see the publication

Gene transfers can date the tree of life

Adrián Davín, Eric Tannier, Tom Williams, Bastien Boussau, Vincent Daubin, Gergely Szöllősi

Nature Ecology & Evolution . 2 ( 5 ) : 904-909

DOI: 10.1038/s41559-018-0525-3

Journal article

see the publication

MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Cédric Chauve, Akbar Rafiey, Adrian Davin, Celine Scornavacca, Philippe Veber, Bastien Boussau...

DOI: 10.1101/127548

Other publication

see the publication

Comparative Methods for Reconstructing Ancient Genome Organization

Yoann Anselmetti, Nina Luhmann, Sèverine Bérard, Eric Tannier, Cedric Chauve

Comparative Genomics: Methods and Protocols . : 343 - 362

DOI: 10.1007/978-1-4939-7463-4_13

Book chapter

see the publication

Algorithms for computing the double cut and join distance on both gene order and intergenic sizes

Guillaume Fertin, Géraldine Jean, Eric Tannier

Algorithms for Molecular Biology . 12 : 16 (11 pages)

DOI: 10.1186/s13015-017-0107-y

Journal article

see the publication

Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses

Edwin Jacox, Mathias Weller, Eric Tannier, Celine Scornavacca

Bioinformatics . 33 ( 7 ) : 980-987

DOI: 10.1093/bioinformatics/btw778

Journal article

see the publication

DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

Wandrille Duchemin, Yoann Anselmetti, Murray Patterson, Yann Ponty, Sèverine Bérard, Cedric Chauve...

Genome Biology and Evolution . 9 ( 5 ) : 1312-1319

DOI: 10.1093/gbe/evx069

Journal article

see the publication

Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuels

Yoann Anselmetti, Vincent Berry, Cedric Chauve, Annie Chateau, Eric Tannier, Sèverine Bérard

Journées Ouvertes Biologie Informatique Mathématiques .

Conference paper

see the publication

Genome rearrangements with indels in intergenes restrict the scenario space

Laurent Bulteau, Guillaume Fertin, Eric Tannier

BMC Bioinformatics . 17 ( Suppl 14 ) : 426 (7 pages)

DOI: 10.1186/s12859-016-1264-6

Journal article

see the publication

Francisella IglG protein and the DUF4280 proteins: PAAR-like proteins in non-canonical Type VI secretion systems?

Claire Lays, Eric Tannier, Thomas Henry

Microbial Cell . 3 ( 11 ) : 576-578

DOI: 10.15698/mic2016.11.543

Journal article

see the publication

Genome Rearrangements on both Gene Order and Intergenic Regions

Guillaume Fertin, Géraldine Jean, Eric Tannier

WABI 2016 . 9838 : 162-173

Conference paper

see the publication

Sorting Signed Permutations by Reversal (Reversal Sequence)

Eric Tannier

Encyclopedia of Algorithms . 978-1-4939-2863-7 : 2028-2032

Book chapter

see the publication

In silico experimental evolution provides independent and challenging benchmarks for comparative genomics

Priscila Biller, Eric Tannier, Guillaume Beslon, Carole Knibbe

Journées ouvertes Biologie Informatique Mathématiques . : 79-82

Conference paper

see the publication