
Quantitative and Evolutionary Ecology of Communities Group
Thioulouse Jean
Directeur de recherche
CNRS
Mendel Building, 1st floor. Office 11.048
Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/
Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO
ORCID ID: https://orcid.org/0000-0001-7664-05980
IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse
Reproducible research : A series of paper with graphs and computations reproducibility:
https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/
ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1
Evol. Biol. 2021 paper reproducibility:
Overcoming the Spurious Groups Problem in Between-Group PCA
Research activity
My research activities are centred around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.
The ade4 package for R :ade4
The adegraphics package for R :adegraphics
The ade4TkGUI package for R :ade4TkGUI
Publications
Display of 1 to 30 publications on 153 in total
Unravelling the environmental correlates influencing the seasonal biodiversity of aquatic Heteropteran assemblages in northern Africa
Limnologica . : 126021
Journal article
see the publicationWater Quality Shapes Freshwater Macroinvertebrate Communities in Northern Tunisia
Recent Advances in Environmental Science from the Euro-Mediterranean and Surrounding Regions (2nd Edition) . : 1915-1919
Book chapter
see the publicationOvercoming the Spurious Groups Problem in Between-Group PCA
Evolutionary Biology .
Journal article
see the publicationSmall-Scale Variability in Bacterial Community Structure in Different Soil Types
Microbial ecology .
Journal article
see the publicationSurface water quality assessment in a semiarid Mediterranean region (Medjerda, Northern Tunisia) using partial triadic analysis
Environmental Science and Pollution Research .
Journal article
see the publicationVaginal Tampon Colonization by Staphylococcus aureus in Healthy Women
Applied and Environmental Microbiology . 86 ( 18 ) : e01249-20
DOI: 10.1128/AEM.01249-20
Journal article
see the publicationAssessing potential surrogates of macroinvertebrate diversity in North-African Mediterranean aquatic ecosystems
Ecological Indicators . 101 : 324-329
Journal article
see the publicationComplex ecological interactions of Staphylococcus aureus in tampons during menstruation
Scientific Reports . 8 ( 1 ) : 9942
Journal article
see the publicationRaisonner l'utilisation des légumineuses ligneuses pour réhabiliter des sols dégradés en milieu méditerranéen et tropical
Innovations Agronomiques . 60 : 125-131
Journal article
see the publicationadegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data
The R Journal . 9 ( 2 ) : 198-212
DOI: 10.32614/RJ-2017-042
Journal article
see the publicationThe use of STATICO and COSTATIS, two exploratory three-ways analysis methods: an application to the ecology of aquatic heteroptera in the Medjerda watershed (Tunisia)
Environmental and Ecological Statistics . 24 ( 2 ) : 269 - 295
Journal article
see the publicationImpact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities
Frontiers in Plant Science . 7 : 1364
Journal article
see the publicationOccurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties
Research in Microbiology . 167 ( 4 ) : 313-324
Journal article
see the publicationBacterial community structure at the microscale in two different soils
Microbial ecology . 72 ( 3 ) : 717-724
Journal article
see the publicationField Application of the Mycorrhizal Fungus Rhizophagus irregularis Increases the Yield of Wheat Crop and Affects Soil Microbial Functionalities
American Journal of Plant Sciences . 06 : 3205-3215
Journal article
see the publicationPotentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments
Ecological Engineering . 79 : 113-119
Journal article
see the publicationSoil Organic Matter Quality, Structure and Activity of the Denitrifiers Community as Influenced by Decaying Mulched Crop Residues
Applied Ecology and Environmental Research . 13 : 655-675
Journal article
see the publicationSimilar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale
PLoS ONE . 9 ( 11 ) : 1-11
Journal article
see the publicationEctomycorrhizal fungi on the early colonizing shrub Sarcolaena oblongifolia F. facilitate the establishment of an endemic tree Uapaca bojeri L. in Madagascarian highland forests
International Journal of Ecology and Ecosolution . 1 : 1-15
Journal article
see the publicationTurnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.
Nature Communications . 4 : 1434
DOI: 10.1038/ncomms2431
Journal article
see the publicationMéthodes d'analyse multivariée pour l'étude de l'influence de la mycorhizosphère sur la structure et le fonctionnement des communautés bactériennes du sol
Des champignons symbiotiques contre la désertification. Ecosystèmes mediterranéens, tropicaux et insulaires . 978-2-7099-1949-4 : 474-508
Book chapter
see the publicationThe exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa
Soil Biology and Biochemistry . 65 : 172--179
Journal article
see the publicationEctomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings
Soil Biology and Biochemistry . 57 : 468-476
Journal article
see the publicationAustralian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?
Bois et Forêts des Tropiques . 318 ( 4 ) : 59-65
Journal article
see the publicationSpatial processes driving soil microbial community assembly on a wide scale
4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment .
Conference paper
see the publicationCommunity ecology in the age of multivariate multiscale spatial analysis
Ecological monographs . 82 ( 3 ) : 257 - 275
DOI: 10.1890/11-1183.1
Journal article
see the publicationBiogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management
Global Ecology and Biogeography . 20 ( 4 ) : 641-652
Journal article
see the publicationSIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS
Annals of Applied Statistics . 5 ( 4 ) : 2300-2325
DOI: 10.1214/10-AOAS372
Journal article
see the publicationBiogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management
Global Ecology and Biogeography . 20 : 641-652
Journal article
see the publication