Home Page : You can visit my home page here : http://pbil.univ-lyon1.fr/JTHome/Biblio/
ORCID ID : https://orcid.org/0000-0001-7664-0598
Reproductible Research : List of paper with reproducible computations/figures :
ade4 Book : Multivariate Analysis of Ecological Data with ade4:
My research activity is centered around innovation in the field of statistical methodology in Biology. During the last years, I have particularly been interested in the methods of multivariate data analysis for the study of bacterial diversity. I have also been working on developments in computer science, which led to software distribution (several R packages), and teaching and consulting activities.
Display of 1 to 30 publications on 147 in total
Small-Scale Variability in Bacterial Community Structure in Different Soil Types
Microbial Ecology .
Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women
Applied and Environmental Microbiology . 86 ( 18 ) : e01249-20
Surface water quality assessment in a semiarid Mediterranean region (Medjerda, Northern Tunisia) using partial triadic analysis
Environmental Science and Pollution Research .
Assessing potential surrogates of macroinvertebrate diversity in North-African Mediterranean aquatic ecosystems
Ecological Indicators . 101 : 324-329
Complex ecological interactions of Staphylococcus aureus in tampons during menstruation
Scientific Reports . 8 ( 1 ) : 9942
The use of STATICO and COSTATIS, two exploratory three-ways analysis methods: an application to the ecology of aquatic heteroptera in the Medjerda watershed (Tunisia)
Environmental and Ecological Statistics . 24 ( 2 ) : 269 - 295
adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data
The R Journal . 9 ( 2 ) : 198--212
Impact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities
Frontiers in Plant Science . 7 : 1364
Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties
Research in Microbiology . 167 ( 4 ) : 313-324
Bacterial community structure at the microscale in two different soils
Microbial Ecology . 72 ( 3 ) : 717-724
Potentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments
Ecological Engineering . 79 : 113-119
Field Application of the Mycorrhizal Fungus Rhizophagus irregularis Increases the Yield of Wheat Crop and Affects Soil Microbial Functionalities
American Journal of Plant Sciences . 06 : 3205-3215
Soil Organic Matter Quality, Structure and Activity of the Denitrifiers Community as Influenced by Decaying Mulched Crop Residues
Applied Ecology and Environmental Research . 13 : 655-675
Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale
PLoS ONE . 9 ( 11 ) : 1-11
Ectomycorrhizal fungi on the early colonizing shrub Sarcolaena oblongifolia F. facilitate the establishment of an endemic tree Uapaca bojeri L. in Madagascarian highland forests
International Journal of Ecology and Ecosolution . 1 : 1-15
Méthodes d'analyse multivariée pour l'étude de l'influence de la mycorhizosphère sur la structure et le fonctionnement des communautés bactériennes du sol
Des champignons symbiotiques contre la désertification. Ecosystèmes mediterranéens, tropicaux et insulaires . 978-2-7099-1949-4 : 474-508
Ectomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings
Soil Biology and Biochemistry . 57 : 468-476
The exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa
Soil Biology and Biochemistry . 65 : 172--179
Australian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?
Bois et Forêts des Tropiques . 318 ( 4 ) : 59-65
Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.
Nature Communications . 4 : 1434
Spatial processes driving soil microbial community assembly on a wide scale
4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment .
Community ecology in the age of multivariate multiscale spatial analysis
Ecological monographs . 82 ( 3 ) : 257 - 275
Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management
Global Ecology and Biogeography . 20 ( 4 ) : 641-652
Diversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae
Journal of Medical Entomology . 48 : 788-796
Biogeographical patterns of soil molecular microbial biomass
Ecology of soil microorganisms : microbes as important drivers of soil processes . : 1 p.
Soil fungal communities ecology: a biogeographical approach
Ecology of soil Microorganisms Conference . : 1 p.
Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative
Sustainable Agriculture Volume 2 . 978-94-007-0393-3 : 857-865
SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS
Annals of Applied Statistics . 5 : 2300-2325
Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris
Journal of Clinical Microbiology . 49 ( 1 ) : 315-324