Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Thioulouse Jean

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 27 56

Site internet

Email

Mendel Building, 1st floor. Office 11.048

Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/

Reproducible research : A series of paper with graphs and computations reproducibility:

https://jthome.thioulouse.fr/Reproducible_Research/

https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/

Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO

ORCID ID: https://orcid.org/0000-0001-7664-05980

IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse

ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1

Evol. Biol. 2021 paper reproducibility:

Overcoming the Spurious Groups Problem in Between-Group PCA

Research activity

My research activities are centred  around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.

The ade4 package for R :ade4

The adegraphics package for R :adegraphics

The ade4TkGUI package for R :ade4TkGUI

 

Publications

Display of 61 to 90 publications on 167 in total

Microbial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Jean Thioulouse, Claudy C. Jolivet, Nicolas N. Saby, Mélanie M. Lelievre...

BAGECO10 .

Conference paper

see the publication

Prédiction des propriétés du sol à l’échelle nationale à partir des données du RMQS : Exemple des Éléments Trace Métalliques

Nicolas N. Saby, Claudy C. Jolivet, Line Boulonne, Céline Ratié, Ben P. Marchant, R. Murray Lark...

10. Journées d'Etude des Sols .

Conference paper

see the publication

Diversité des communautés microbiennes telluriques à l'échelle du territoire national

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel Martin, Nicolas Saby, Dominique Arrouays...

Journées d'Etude des Sols . : 151-152

Conference paper

see the publication

Rhizosphere microbiota interfers with plant-plant interactions

A. Sanon, Z. N. Andrianjaka, Y. Prin, R. Bally, J. Thioulouse, G. Comte...

Plant and Soil . ( 321 ) : 259-278

DOI: 10.1007/s11104-009-0010-5

Journal article

see the publication

Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data

N.P.A. Saby, J. Thioulouse, C. Jolivet, C. Ratié, Line Boulonne, A. Bispo...

Science of the Total Environment . 407 : 5644-5652

Journal article

see the publication

Responses of Pinus halepensis growth soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation

L. Ouahmane, J.C. Revel, M. Hafidi, J. Thioulouse, Y. Prin, A. Galiana...

Plant and Soil . 320 (1-2) : 169-179

Journal article

see the publication

Ecomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Dominique Arrouays, Nicolas Saby, Jean Thioulouse...

4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) . : 1 p.

Conference paper

see the publication

Ecomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Dominique D. Arrouays, Nicolas N. Saby, Jean J. Thioulouse...

4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM) . : 1 p.

Conference paper

see the publication

Diversité des communautés microbiennes telluriques à l'échelle du territoire national

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel Martin, Nicolas Saby, Dominique Arrouays...

Journées d'Etude des Sols . : 151-152

Conference paper

see the publication

Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data

Nicolas N. Saby, J. Thioulouse, Claudy C. Jolivet, Céline Ratié, Line Boulonne, Antonio Bispo...

Science of the Total Environment . 407 : 5644–5652

DOI: 10.1016/j.scitotenv.2009.07.002

Journal article

see the publication

Responses of Pinus halepensis growth, soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation.

L. Ouahmane, J.C. Revel, M. Hafidi, J. Thioulouse, Y. Prin, A. Galiana...

Plant and Soil . 320 : 169-179

DOI: 10.1007/s11104-008-9882-z

Journal article

see the publication

The exotic legume tree species Acacia holosericea alters microbial soil functionalities and the structure of the arbuscular mycorrhizal community

P. Remigi, A. Faye, A. Kane, M. Deruaz, J. Thioulouse, M. Cissoko...

Applied and Environmental Microbiology . 74 : 1485-1493

Journal article

see the publication

Microbial-biogeography of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)

Lionel Ranjard, Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Nicolas N. Saby, Manuel M. Martin...

Eurosoil 2008 Book of Abstracts . : 59-60

Conference paper

see the publication

Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting

Claire Valiente Moro, Jean Thioulouse, Claude Chauve, Philippe Normand, Lionel Zenner

Research in Microbiology . 160 ( 1 ) : 63-70

DOI: 10.1016/j.resmic.2008.10.006

Journal article

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Le projet ECOMIC-RMQS ou comment faire de la microbiogéographie à l'échelle de la France

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel Martin, Nicolas Saby, Dominique Arrouays...

Journées d'animations scientifiques des ORE ACBB . : n.p.

Conference paper

see the publication

Arbuscular mycorrhizas and ectomycorrhizas of Uapaca bojeri L. (Euphorbiaceae): sporophore diversity patterns of root colonization and effects on seedling growth and soil microbial catabolic diversity

N. Ramanankierana, M. Ducousso, N. Rakotoarimanga, Y. Prin, J. Thioulouse, E. Randrianjohany...

Mycorrhiza . 17 : 195-208

Journal article

see the publication

Soil functional diversity and P solubilization from rock phosphate after inoculation whith native or allochtonous arbuscular mycorrhizal fungi

L. Ouahmane, Jean Thioulouse, M. Hafidi, Yves Prin, Marc Ducousso, Antoine Galiana...

Forest Ecology and Management . 241 ( 1-3 ) : 200-208

DOI: 10.1016/j.foreco.2007.01.015

Journal article

see the publication

Improvement of Cupressus atlantica Gaussen growth by inoculation with native arbuscular mycorrhizal fungi

L. Ouahmane, M. Hafidi, J. Thioulouse, M. Ducousso, M. Kisa, Y. Prin...

Journal of Applied Ecology . 103 : 683-690

Journal article

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Detection of recombinant human erythropoietin in urine for doping analysis: interpretation of isoelectric profiles by discriminant analysis

F. Lasne, J. Thioulouse, L. Martin, J. de Ceaurriz

Electrophoresis . 28 ( 12 ) : 1875-1881

DOI: 10.1002/elps.200600363

Journal article

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Interactive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages

J. Thioulouse, S. Dray

Journal of Statistical Software . 22 : 1-14

Journal article

see the publication

Influence du type de sol et du mode d’occupation des sols sur la quantité d’ADN extraite et la densité des communautés bactériennes indigènes

Samuel Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Dominique D. Arrouays, Manuel Pascal Martin, Nicolas N. Saby...

AFEM (Association Francophone d'Ecologie Microbienne) . : n.p.

Poster

see the publication

Microbiogéographie à l'échelle du territoire national

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel M. Martin, Nicolas N. Saby, Dominique D. Arrouays...

AFEM (Association Francophone d'Ecologie Microbienne) . : n.p.

Conference paper

see the publication

Biological control of Striga hermontica by Cubiterms mound powder amendment in sorghum culture

Z. Andrianjaka, R. Bally, Michel Le Page, J. Thioulouse, G. Comte, M. Kisa...

Applied Soil Ecology . 37 ( 3 ) : 175-183

DOI: 10.1016/j.apsoil.2007.03.001

Journal article

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Arbuscular mycorrhizal symbiosis can counterbalance the negative influence of the exotic tree species Eucalyptus camaldulensis on the structure and functioning of soil microbial communities in a sahelian soil

M. Kisa, A. Sanon, J. Thioulouse, K. Assigbetse, S. Sylla, Rodolphe Spichiger...

FEMS Microbiology Ecology . 62 ( 1 ) : 32-44

DOI: 10.1111/j.1574-6941.2007.00363.x

Journal article

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Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities

Hervé Sanguin, B. Remenant, Arnaud Dechesne, J. Thioulouse, Timothy M. Vogel, Xavier Nesme...

Applied and Environmental Microbiology . 72 ( 6 ) : 4302-4312

DOI: 10.1128/AEM.02686-05

Journal article

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Biological effects of native and exotic plant residues on plant growth microbial biomass and N availability under controlled conditions

M.D. Diallo, R. Duponnois, A. Guisse, S. Sall, J.-L. Chotte, J. Thioulouse

European Journal of Soil Biology . 42 : 238-246

Journal article

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Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates

R. Duponnois, K. Assigbetse, H. Ramanankierana, M. Kisa, Jean Thioulouse, Michel Le Page

FEMS Microbiology Ecology . 56 : 292-303

DOI: 10.1111/j.1574-6941.2006.00089.x

Journal article

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A multivariate approach to integrating Datasets using made4 and ade4

A.C. Culhane, J. Thioulouse

R News . -- : 1-15

Journal article

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Displacement of an herbaceous plant species community by mycorrhizal and non-mycorrhizal Gmelina arborea, an exotic tree, grown in a microcosm experiment

A. Sanon, P. Martin, Jean Thioulouse, Christian Plenchette, Rodolphe Spichiger, Michel Le Page...

Mycorrhiza . 16 ( 2 ) : 125-132

DOI: 10.1007/s00572-005-0024-7

Journal article

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The Ectomycorrhizosphere Effect Influences Functional Diversity of Soil Microflora

N. Ramanankierana, N. Rakotoarimanga, J. Thioulouse, K. Marija, E. Randrianjohany, L. Ramaroson...

International Journal of Soil Science . 1 : 8-19

Journal article

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