Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Thioulouse Jean

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 27 56

Site internet

Email

Mendel Building, 1st floor. Office 11.048

Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/

Reproducible research : A series of paper with graphs and computations reproducibility:

https://jthome.thioulouse.fr/Reproducible_Research/

https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/

Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO

ORCID ID: https://orcid.org/0000-0001-7664-05980

IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse

ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1

Evol. Biol. 2021 paper reproducibility:

Overcoming the Spurious Groups Problem in Between-Group PCA

Research activity

My research activities are centred  around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.

The ade4 package for R :ade4

The adegraphics package for R :adegraphics

The ade4TkGUI package for R :ade4TkGUI

 

Publications

Display of 121 to 150 publications on 167 in total

Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics

Christophe Mougel, S. Teyssier, C. d'Angelo, K. Groud, M. Neyra, K. Sidi-Boumedine...

Genetics Selection Evolution . 33 : S319-S338

Journal article

see the publication

Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability.

L. Ranjard, F. Poly, J. C. Lata, Christophe Mougel, J. Thioulouse, S. Nazaret

Applied and Environmental Microbiology . 67 ( 10 ) : 4479-87

DOI: 10.1128/AEM.67.10.4479–4487.2001

Journal article

see the publication

Mycorrhizal soil infectivity and AM fungal spore communities of different aged fallows in Senegal

R. Duponnois, C. Plenchette, J. Thioulouse, P. Cadet

Applied Soil Ecology . 17 : 239-251

Journal article

see the publication

Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics

Christophe Mougel, Sabrina Teyssier, C. d'Angelo, K. Groud, M. Neyra, K. Sidi-Boumedine...

Genetics Selection Evolution . 33 ( 1 ) : 319-338

Journal article

see the publication

Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints : biological and methodological variability

Lionel Ranjard, F. Poly, J.C. Lata, Christophe Mougel, Jean Thioulouse, Sylvie Nazaret

Applied and Environmental Microbiology . 67 ( 10 ) : 4479-4487

Journal article

see the publication

The mycorrhizal soil infectivity and arbuscular mycorrhizal fungal spore communities in soils of different aged fallows in Senegal

Robin Duponnois, Christian Plenchette, Jean Thioulouse, Patrice Cadet

Applied Soil Ecology . 17 : 239-251

Journal article

see the publication

Relationships between abiotic and biotic soil properties during fallow periods in the sudanian zone of Senegal

Raphaël J. Manlay, P. Cadet, J. Thioulouse, J.L. Chotte

Applied Soil Ecology . 14 : 89-101

Journal article

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Successional trends in the characteristics of soil nematodes communities in cropped and fallow lands in Senegal (Sonkorong)

E. Pate, N. Ndiaye-Faye, J. Thioulouse, C. Villenave, T. Bongers, P. Cadet...

Applied Soil Ecology . 14 : 5-15

Journal article

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A soil microscale study to reveal the heterogeneity of Hg (II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints

Lionel Ranjard, Sylvie Nazaret, F. Gourbiere, Jean Thioulouse, P. Linet, A. Richaume

FEMS Microbiology Ecology . 31 : 107-115

Journal article

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Recherche de méthodes de gestion des peuplements de nématodes phytoparasites par les facteurs du sol en zone soudano-sahélienne au Sénégal

P. Cadet, J.-F. Bois, J.-L. Chotte, R. Duponnois, N. N'Diaye-Faye, C. Floret...

Étude et Gestion des Sols . 7 ( 4 ) : 261-270

Journal article

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A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints

L. Ranjard, S. Nazaret, F. Gourbiere, J. Thioulouse, P. Linet, A. Richaume

FEMS Microbiology Ecology . 31 ( 2 ) : 107-115

DOI: 10.1111/j.1574-6941.2000.tb00676.x

Journal article

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Ectomycorrhization of six Acacia auriculiformis provenances from Australia Papua New Guinea and Senegal in glasshouse conditions: effect on the plant growth and on the multiplication of plant parasitic nematodes

R. Duponnois, H. Founoune, D. Lesueur, J. Thioulouse, M. Neyra

Australian Journal of Experimental Agriculture . 40 : 443-450

Journal article

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Heterogeneous Cell Density and Genetic Structure of Bacterial Pools Associated with Various Soil Microenvironments as Determined by Enumeration and DNA Fingerprinting Approach (RISA)

L. Ranjard, F. Poly, J. Combrisson, A. Richaume, F. Gourbiere, J. Thioulouse...

Microbial ecology . 39 : 263-272

Journal article

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Diversity of the bacterial hyperparasite Pasteuria penetrans in relation to the control of root-knot nematodes (Meloidogyne spp.) on Acacia holosericea

R. Duponnois, M. Fargette, S. Fould, J. Thioulouse, K.G. Davies

Nematology . 2 : 435-442

Journal article

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Identification of birds as biological markers along a neotropical urban-rural gradient using co-inertia analysis

P.A. Reynaud, J. Thioulouse

Journal of Environmental Management . 59 : 121-140

Journal article

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Heterogeneous cell density and genetic structure of bacterial pools associated with various microenvironments as determined by enumeration and DNA fingerprinting approach (RISA)

Lionel Ranjard, F. Poly, J. Combrisson, A. Richaume, F. Gourbiere, Jean Thioulouse...

Microbial ecology . 39 : 263-272

Journal article

see the publication

Approche qualitative et quantitative de l'effet de la jachère sur des populations de champignons mycorhiziens à arbuscules

Robin Duponnois, Christian Plenchette, Jean Thioulouse, Patrice Cadet

Le sol, milieu vivant : fonctionnement et gestion .

Conference paper

see the publication

Susceptibility of several sahelian Acacia to Meloidogyne javanica (Treub) Chitw

R. Duponnois, K. Senghor, J. Thioulouse, A. Ba

Agroforestry Systems . 46 : 123-130

Journal article

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Ecology of larval mosquitoes with special reference to Anopheles arabiensis (Diptera: Culcidae) in market-garden wells in urban Dakar Senegal

V. Robert, H.P. Awono-Ambene, J. Thioulouse

Journal of Medical Entomology . 35 : 948-955

Journal article

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ADE-4 Software: a tool for multivariate analysis and graphical display

Monique Simier, Jean Thioulouse, Jean-Michel Olivier

Océanis : Série de documents océanographiques . 24 ( 4 ) : 393-416

Book chapter

see the publication

Identification of soil factors that relate to the structure of the plant parasitic nematode community

P. Cadet, J. Thioulouse

Applied Soil Ecology . 8 : 35-49

Journal article

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Functional data analysis of curve asymmetry with application to the color pattern of Hydropsyche contubernalis head capsule

S. Champely, B. Guinand, J. Thioulouse, A. Clermidy

Biometrics . 53 : 294-305

Journal article

see the publication

ADE-4: a multivariate analysis and graphical display software

J. Thioulouse, D. Chessel, S. Dolédec, J.M. Olivier

Statistics and Computing . 7 : 75-83

Journal article

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NetMul a World-Wide Web user interface for multivariate analysis sofware

J. Thioulouse, François Chevenet

Computational Statistics and Data Analysis . 21 : 369-372

Journal article

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On-line tools for sequence retrieval and multivariate statistics in molecular biology

G. Perrière, J. Thioulouse

Computer Applications in the Biosciences . 12 : 63-69

Journal article

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Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences

G. Perrière, J.R. Lobry, J. Thioulouse

Computer Applications in the Biosciences . 12 : 519-524

Journal article

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Towards Better Graphics for Multivariate Analysis: the Interactive Factor Map

J. Thioulouse

Computational Statistics and Data Analysis . 11 : 11-21

Journal article

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Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package

J. Thioulouse, J.R. Lobry

Bioinformatics . 11 : 321-329

Journal article

see the publication

DE software: multivariate analysis and graphical display of environmental data

J. Thioulouse, S. Doledec, D. Chessel, J.M. Olivier

incollection . -- : 57-62

Journal article

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Multivariate analysis of spatial patterns: a unified approach to local and global structures

J. Thioulouse, D. Chessel, S. Champely

Environmental and Ecological Statistics . 2 : 1-14

Journal article

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