GECO Evolutionary and Computational Genomics

Modeling the Lag Time of Listeria monocytogenes from Viable Count Enumeration and Optical Density Data

F. Baty, Jean-Pierre Flandrois, Marie Laure Delignette-Muller

Applied and Environmental Microbiology . 68 : 5816-5825

2002

Journal article

see the publication

The relative abundance of dinucleotides in transposable elements in five species

E. Lerat, P. Capy, C. Biémont

Molecular Biology and Evolution . 19 : 964-967

2002

Journal article

see the publication

Codon usage by transposable elements and their host genes in five species

E. Lerat, P. Capy, C. Biémont

Journal of Molecular Evolution . 54 : 625-637

2002

Journal article

see the publication

Haplotype tests using coalescent simulations conditional on the number of segregating sites

F. Depaulis, Sylvain Mousset, M. Veuille

Molecular Biology and Evolution . 18 : 1136-1138

2001

Journal article

see the publication

Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ?

L. Duret

incollection . -- : 287-289

2001

Journal article

see the publication

Why do genes have introns? Recombination might add a new piece to the puzzle

L. Duret

Trends in Genetics . 17 : 172-175

2001

Journal article

see the publication

Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification

Laurent Marsan, Marie-France Sagot

Journal of Computational Biology . 7 ( 1 ) : 345-360

2001

Journal article

see the publication

Analysis of pFQ31 a 8551-bp cryptic plasmid from the symbiotic nitrogen-fixing actinomycete Frankia

C. Lavire, D. Louis, G. Perrière, J. Briolay, P. Normand, B. Cournoyer

FEMS Microbiology Letters . 197 : 111-116

DOI: 10.1111/j.1574-6968.2001.tb10591.x

2001

Journal article

see the publication

Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress

O. Pierrugues, C. Brutesco, J. Oshiro, Manolo Gouy, Y. Deveaux, G.M. Carman...

Journal of Biological Chemistry . 276 ( 23 ) : 20300-20308

DOI: 10.1074/jbc.M009726200

2001

Journal article

see the publication

Spatial Modeling of Nitrifier Microhabitats in Soil

G. Grundmann, A. Dechesne, F. Bartoli, Jean-Pierre Flandrois, J. Chassé, R. Kizungu

Soil Science Society of America Journal . 65 ( 6 ) : 1709

DOI: 10.2136/sssaj2001.1709

2001

Journal article

see the publication

Comparaison de séquences d'éléments transposables et de gènes d'hôte chez cinq espèces : A. thaliana, C. elegans, D. melanogaster, H. sapiens et S. cerevisiae

Emmanuelle Lerat

2001

Thesis

see the publication

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

Gabriel Marais, Dominique Mouchiroud, L. Duret

Proceedings of the National Academy of Sciences of the United States of America . 98 : 5688-5692

2001

Journal article

see the publication

Determinants of CpG islands: expression in early embryo and isochore structure

L. Ponger, L. Duret, Dominique Mouchiroud

Genome Research . 11 : 1854-1860

2001

Journal article

see the publication

Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans

Gabriel Marais, L. Duret

Journal of Molecular Evolution . 52 : 275-280

2001

Journal article

see the publication

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

N. Galtier, G. Piganeau, Dominique Mouchiroud, L. Duret

Genetics . 159 : 907-911

2001

Journal article

see the publication

Plant Physiol.A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication

P. Frendo, M.J. Jimenez, C. Mathieu, L. Duret, D. Gallesi, G. van de Sype...

Plant Physiology . 126 : 1706-1715

2001

Journal article

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The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution

L. Duret, L.D. Hurst

Molecular Biology and Evolution . 18 : 757-762

2001

Journal article

see the publication

Some approximation results for the maximum agreement forest problem

E. M. Rodrigues, Marie-France Sagot, Y. Wakabayashi

Approximation, Randomization and Combinatorial Optimization: Algorithms and Techniques (APPROX RANDOM 2001) . 2129 : 159-169

2001

Conference paper

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Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes

Stéphane Guindon, G. Perrière

Molecular Biology and Evolution . 18 ( 9 ) : 1838-1840

DOI: 10.1093/oxfordjournals.molbev.a003972

2001

Journal article

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Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis

A. Aouacheria, Estelle Arnaud, S. Venet, P. Lalle, M. Gouy, D. Rigal...

Oncogene . 20 : 5846-5855

DOI: 10.1038/sj.onc.1204740

2001

Journal article

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Molecular evidence for the existence of two species of Marteilia in Europe

F. Le Roux, G. Lorenzo, P. Peyret, C. Audemard, A. Figueras, C. Vivares...

Journal of Eukaryotic Microbiology . 48 ( 4 ) : 449-454

DOI: 10.1111/j.1550-7408.2001.tb00178.x

2001

Journal article

see the publication

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

M.D. Katinka, S. Duprat, E. Cornillot, G. Metenier, F. Thomarat, G. Prensier...

Nature . 414 : 450-453

DOI: 10.1038/35106579

2001

Journal article

see the publication

A mathematical model describing the thermal virus inactivation

C. Noel, Sandrine Charles, A. Francon, Jean-Pierre Flandrois

Vaccine . 19 : 3575-3582

2001

Journal article

see the publication

Comparaison de séquences d`éléments transposables et de gènes d`hôtes chez cinq espèces : A. Thaliana C. Elegans D. Melanogaster H. Sapiens S. Cerevisiae

E. Lerat

incollection . -- : 347-354

2001

Journal article

see the publication

Small-subunit rRNA genotyping of rhizobia nodulating Australian Acacia spp.

Bénédicte Lafay, Jeremy J. Burdon

Applied and Environmental Microbiology . 67 ( 1 ) : 396-402

DOI: 10.1128/AEM.67.1.396-402.2001

2001

Journal article

see the publication

Fitness and competitive growth advantage of new gentamicin-susceptible MRSA clones spreading in French hospitals

Jean-Pierre Flandrois, F. Laurent

Journal of Antimicrobial Chemotherapy . 47 ( 3 ) : 277-283

DOI: 10.1093/jac/47.3.277

2001

Journal article

see the publication

Gene flow in a facultative apomictic poacea the savanna grass Hyparrhenia diplandra

J. Durand, L. Garnier, I. Dajoz, Sylvain Mousset, M. Veuille

Genetics . 156 : 823-831

2000

Journal article

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Selective sweep near the In(2L)t inversion breakpoint in an African population of Drosophila melanogaster

F. Depaulis, L. Brazier, Sylvain Mousset, A. Turbe, M. Veuille

Genetical Research . 76 : 149-158

2000

Journal article

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Identification and molecular analysis of BANP

Anne-Marie Birot, Laurent Duret, Laurent Bartholin, Bénédicte Santalucia, Isabelle Tigaud, Jean-Pierre Magaud...

Gene . 253 ( 2 ) : 189-196

DOI: 10.1016/S0378-1119(00)00244-4

2000

Journal article

see the publication

EuGene an eurocaryotic gene finder that combines several sources of evidence

Thomas Schiex, A. Moisan, L. Duret, Pierre Rouzé

Journées ouvertes biologie informatique mathématiques .

2000

Conference paper

see the publication

GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Modeling the Lag Time of Listeria monocytogenes from Viable Count Enumeration and Optical Density Data

The relative abundance of dinucleotides in transposable elements in five species

Codon usage by transposable elements and their host genes in five species

Haplotype tests using coalescent simulations conditional on the number of segregating sites

Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ?

Why do genes have introns? Recombination might add a new piece to the puzzle

Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification

Analysis of pFQ31 a 8551-bp cryptic plasmid from the symbiotic nitrogen-fixing actinomycete Frankia

Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress

Spatial Modeling of Nitrifier Microhabitats in Soil

Comparaison de séquences d'éléments transposables et de gènes d'hôte chez cinq espèces : A. thaliana, C. elegans, D. melanogaster, H. sapiens et S. cerevisiae

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

Determinants of CpG islands: expression in early embryo and isochore structure

Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

Plant Physiol.A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication

The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution

Some approximation results for the maximum agreement forest problem

Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes

Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis

Molecular evidence for the existence of two species of Marteilia in Europe

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

A mathematical model describing the thermal virus inactivation

Comparaison de séquences d`éléments transposables et de gènes d`hôtes chez cinq espèces : A. Thaliana C. Elegans D. Melanogaster H. Sapiens S. Cerevisiae

Small-subunit rRNA genotyping of rhizobia nodulating Australian Acacia spp.

Fitness and competitive growth advantage of new gentamicin-susceptible MRSA clones spreading in French hospitals

Gene flow in a facultative apomictic poacea the savanna grass Hyparrhenia diplandra

Selective sweep near the In(2L)t inversion breakpoint in an African population of Drosophila melanogaster

Identification and molecular analysis of BANP

EuGene an eurocaryotic gene finder that combines several sources of evidence