GECO Evolutionary and Computational Genomics

The non-redundant Bacillus subtilis (NRSub) database: update 1998

G. Perrière, Manolo Gouy, T. Gojobori

Nucleic Acids Research . 26 ( 1 ) : 60-62

DOI: 10.1093/nar/26.1.60

1998

Journal article

see the publication

Multiple sequence alignment with Clustal X

F. Jeanmougin, J.D. Thompson, Manolo Gouy, D.G. Higgins, T.J. Gibson

Trends in Biochemical Sciences . 23 ( 10 ) : 403-405

DOI: 10.1016/S0968-0004(98)01285-7

1998

Journal article

see the publication

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis

N. Galtier, Manolo Gouy

Molecular Biology and Evolution . 15 ( 7 ) : 871-879

DOI: 10.1093/oxfordjournals.molbev.a025991

1998

Journal article

see the publication

Microsporidian Encephalitozoon cuniculi a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core

E. Peyretaillade, C. Biderre, P. Peyret, F. Duffieux, G. Metenier, Manolo Gouy...

Nucleic Acids Research . 26 : 3513-3520

DOI: 10.1093/nar/26.15.3513

1998

Journal article

see the publication

Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta Prasinophyceae)

C. Courties, R. Perasso, M.-J. Chrétiennot-Dinet, Manolo Gouy, Laure Guillou, M. Troussellier

Journal of Phycology . 34 : 844-849

DOI: 10.1046/j.1529-8817.1998.340844.x

1998

Journal article

see the publication

Model of the influence of time and mild temperature on Listeria monocytogenes nonlinear survival curves

S. Breand, G. Fardel, Jean-Pierre Flandrois, L. Rosso, R. Tomassone

International Journal of Food Microbiology . 40 : 185-195

1998

Journal article

see the publication

NEURAL NETWORKS AS AN ALTERNATIVE METHOD FOR PREDICTING BACTERIAL GROWTH RATE FROM THE BEGINNING OF A GROWTH CURVE

M. Delignette-Muller, Jean-Pierre Flandrois

Industrial Applications of Neural Networks . : 451-457

DOI: 10.1142/9789812816955_0053

1998

Book chapter

see the publication

Searching for regulatory elements in human noncoding sequences

L. Duret, P. Bucher

Current Opinion in Structural Biology . 7 : 399-406

1997

Journal article

see the publication

The NRSub database: update 1997

G. Perrière, I. Moszer, T. Gojobori

Nucleic Acids Research . 25 : 53-56

1997

Journal article

see the publication

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

J. Pawlowski, I. Bolivar, J.F. Fahrni, C. de Vargas, Manolo Gouy, L. Zaninetti

Molecular Biology and Evolution . 14 ( 5 ) : 498-505

DOI: 10.1093/oxfordjournals.molbev.a025786

1997

Journal article

see the publication

Influence of atmospheric conditions during incubation on the susceptibilities of Streptococcus pneumoniae isolates to five beta- lactam antibiotics

M. Chomarat, L. Chollet, M. Peyret, Jean-Pierre Flandrois

Journal of Antimicrobial Chemotherapy . 40 ( 4 ) : 599-601

DOI: 10.1093/jac/40.4.599

1997

Journal article

see the publication

Simple relationship between acid dissociation constant and minimal pH for microbial growth in laboratory medium

Jean-Pierre Flandrois, L. Rosso, E. Zuber, C. Pichat

International Journal of Food Microbiology . 35 ( 1 ) : 75-81

DOI: 10.1016/S0168-1605(96)01231-7

1997

Journal article

see the publication

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata

D. Graur, Manolo Gouy, L. Duret

Molecular Phylogenetics and Evolution . 7 ( 2 ) : 195-200

DOI: 10.1006/mpev.1996.0391

1997

Journal article

see the publication

Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle

F Guéhenneux, L. Duret, Mb Callanan, R Bouhas, S Hayette, C Berthet...

Leukemia . 11 ( 3 ) : 370-375

DOI: 10.1038/sj.leu.2400599

1997

Journal article

see the publication

Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi

M. Lesenechal, L. Duret, M.I. Cano, R.A. Mortara, M. Jolivet, M.E. Camargo...

Molecular and Biochemical Parasitology . 87 : 193-204

1997

Journal article

see the publication

Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices

M.-F. Sagot, Alain Viari

Annual Symposium on Combinatorial Pattern Matching (CPM) . 1264 : 224-246

DOI: 10.1007/3-540-63220-4_62

1997

Conference paper

see the publication

Multiple sequence comparison - A peptide matching approach

Marie-France Sagot, Alain Viari, H Soldano

Theoretical Computer Science . 180 ( 1-2 ) : 115--137

DOI: 10.1016/S0304-3975(96)00137-5

1997

Journal article

see the publication

Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony

N.J. Tourasse, Manolo Gouy

Molecular Biology and Evolution . 14 ( 3 ) : 287-298

DOI: 10.1093/oxfordjournals.molbev.a025764

1997

Journal article

see the publication

Reappraisal of the effect of temperature on the growth kinetics of Aeromonas salmonicida

V. Guérin-Faublée, Sandrine Charles, M. Chomarat, Jean-Pierre Flandrois

Letters in Applied Microbiology . 25 : 363-366

1997

Journal article

see the publication

A model describing the relationship between lag time and mild temperature increase duration

S. Breand, G. Fardel, Jean-Pierre Flandrois, L. Rosso, R. Tomassone

International Journal of Food Microbiology . 38 : 157-167

1997

Journal article

see the publication

Homogeneous Two-Site Immunometric Assay Kinetics as a Theoretical Tool for Data Analysis

Emmanuel Zuber, Gérard Mathis, Jean-Pierre Flandrois

Analytical Biochemistry . 251 ( 1 ) : 79-88

DOI: 10.1006/abio.1997.2243

1997

Journal article

see the publication

A Descriptive Model for the Kinetics of a Homogeneous Fluorometric Immunoassay

Emmanuel Zuber, Laurent Rosso, Bruno Darbouret, Françoise Socquet, Gérard Mathis, Jean-Pierre Flandrois

Journal of Immunoassay and Immunochemistry . 18 ( 1 ) : 21-47

DOI: 10.1080/01971529708005803

1997

Journal article

see the publication

Phylogenetic position of the order Lagomorpha (rabbits hares and allies)

D. Graur, L. Duret, Manolo Gouy

Nature . 379 : 333-335

DOI: 10.1038/379333a0

1996

Journal article

see the publication

A Double Combinatorial Approach to Discovering Patterns in Biological Sequences

M.-F. Sagot, Alain Viari

incollection . 1075 : 186-208

1996

Journal article

see the publication

WWW-query: an on-line retrieval system for biological sequence banks

G. Perrière, Manolo Gouy

Biochimie . 78 ( 5 ) : 364-369

DOI: 10.1016/0300-9084(96)84768-7

1996

Journal article

see the publication

On-line tools for sequence retrieval and multivariate statistics in molecular biology

G. Perrière, J. Thioulouse

Computer Applications in the Biosciences . 12 : 63-69

1996

Journal article

see the publication

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

N. Galtier, Manolo Gouy, Christian Gautier

Bioinformatics . 12 ( 6 ) : 543-548

DOI: 10.1093/bioinformatics/12.6.543

1996

Journal article

see the publication

Application of a modified disc diffusion technique to antimicrobial susceptibility testing of Vibrio anguillarum and Aeromonas salmonicida clinical isolates

V. Guerin-Faublée, Marie Laure Delignette-Muller, M. Vigneulle, Jean-Pierre Flandrois

Veterinary Microbiology . 51 : 137-149

1996

Journal article

see the publication

Differential growth of Listeria monocytogenes at 4 and 8°C: Consequences for the Shelf Life of Chilled Products

L. Rosso, S. Bajard, Jean-Pierre Flandrois, C. Lahellec, J. Fournaud, P. Veit

Journal of Food Protection . 59 ( 9 ) : 944-949

DOI: 10.4315/0362-028X-59.9.944

1996

Journal article

see the publication

Evaluation of an expert system linked to a rapid antibiotic susceptibility testing system for the detection of β-lactam resistance phenotypes

Jean-Pierre Flandrois, G. Vedel, M. Peyret, J.P. Gayral, Patrick Millot

Research in Microbiology . 147 ( 4 ) : 297-309

DOI: 10.1016/0923-2508(96)81390-8

1996

Journal article

see the publication

GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

The non-redundant Bacillus subtilis (NRSub) database: update 1998

Multiple sequence alignment with Clustal X

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis

Microsporidian Encephalitozoon cuniculi a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core

Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta Prasinophyceae)

Model of the influence of time and mild temperature on Listeria monocytogenes nonlinear survival curves

NEURAL NETWORKS AS AN ALTERNATIVE METHOD FOR PREDICTING BACTERIAL GROWTH RATE FROM THE BEGINNING OF A GROWTH CURVE

Searching for regulatory elements in human noncoding sequences

The NRSub database: update 1997

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

Influence of atmospheric conditions during incubation on the susceptibilities of Streptococcus pneumoniae isolates to five beta- lactam antibiotics

Simple relationship between acid dissociation constant and minimal pH for microbial growth in laboratory medium

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata

Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle

Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi

Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices

Multiple sequence comparison - A peptide matching approach

Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony

Reappraisal of the effect of temperature on the growth kinetics of Aeromonas salmonicida

A model describing the relationship between lag time and mild temperature increase duration

Homogeneous Two-Site Immunometric Assay Kinetics as a Theoretical Tool for Data Analysis

A Descriptive Model for the Kinetics of a Homogeneous Fluorometric Immunoassay

Phylogenetic position of the order Lagomorpha (rabbits hares and allies)

A Double Combinatorial Approach to Discovering Patterns in Biological Sequences

WWW-query: an on-line retrieval system for biological sequence banks

On-line tools for sequence retrieval and multivariate statistics in molecular biology

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

Application of a modified disc diffusion technique to antimicrobial susceptibility testing of Vibrio anguillarum and Aeromonas salmonicida clinical isolates

Differential growth of Listeria monocytogenes at 4 and 8°C: Consequences for the Shelf Life of Chilled Products

Evaluation of an expert system linked to a rapid antibiotic susceptibility testing system for the detection of β-lactam resistance phenotypes