GECO Génomique Computationnelle et Evolutive

MADE4: an R package for multivariate analysis of gene expression data

A.C. Culhane, J. Thioulouse, G. Perrière, D.G. Higgins

Bioinformatics . 21 : 2789-2790

2005

Article dans une revue

voir la publication

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

A. Calteau, Manolo Gouy, G. Perrière

Journal of Molecular Evolution . 60 ( 5 ) : 557-65

DOI: 10.1007/s00239-004-0094-8

2005

Article dans une revue

voir la publication

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

F. Baty, M.P. Bihl, G. Perrière, A.C. Culhane, M.H. Brutsche

BMC Bioinformatics . 6 : 1-12

2005

Article dans une revue

voir la publication

Type I Polyketide Synthases May Have Evolved Through Horizontal Gene Transfer

Aurélien Ginolhac, Cyrille Jarrin, Patrick Robe, Guy Perrière, Timothy M. Vogel, Pascal Simonet...

Journal of Molecular Evolution . ( 60 ) : 716-725

DOI: 10.1007/s00239-004-0161-1

2005

Article dans une revue

voir la publication

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

A. Aouacheria, V. Navratil, W. Wen, M. Jiang, Dominique Mouchiroud, Christian Gautier...

Oncogene . 24 : 6133-6142

DOI: 10.1038/sj.onc.1208745

2005

Article dans une revue

voir la publication

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

V. Huguet, Manolo Gouy, P. Normand, J.F. Zimpfer, M.P. Fernandez

Molecular Phylogenetics and Evolution . 34 ( 3 ) : 557-568

DOI: 10.1016/j.ympev.2004.11.018

2005

Article dans une revue

voir la publication

Phylogeography and taxonomic status of Niphargus virei (subterranean amphipod).

T. Lefébure, Christophe Jean Douady, M. Gouy, P. Trontelj, J. Briolay, Janine Gibert

Proceedings on Symposium on World Subterranean Biodiversity . : 73-74

2005

Acte de congrès

voir la publication

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes

H. Aurell, Pierre Farge, H. Meugnier, Manolo Gouy, F. Forey, G. Lina...

Applied and Environmental Microbiology . 71 : 282-289

DOI: 10.1128/AEM.71.1.282-289.2005

2005

Article dans une revue

voir la publication

De la prévalence aux valeurs prédictives: L`antibiogramme face à l`évolution de la résistance aux antibiotiques

B. Lamy, G. Carret, Jean-Pierre Flandrois, Marie Laure Delignette-Muller

Annales de Biologie Clinique . 63 : 493-502

2005

Article dans une revue

voir la publication

Site Interdependence Attributed to Tertiary Structure in Amino Acid Sequence Evolution

N. Rodrigue, Nicolas Lartillot, D. Bryant, H. Philippe

Gene . 347 ( 2 ) : 207-217

DOI: 10.1016/j.gene.2004.12.011

2005

Article dans une revue

voir la publication

A bunch of fun-guys: the whole-genome view of yeast evolution

H. Ochman, Vincent Daubin, E. Lerat

Trends in Genetics . 21 : 1-3

2005

Article dans une revue

voir la publication

Examining bacterial species under the specter of gene transfer and exchange

H. Ochman, E. Lerat, Vincent Daubin

Proceedings of the National Academy of Sciences of the United States of America . 102 : 6595-6599

2005

Article dans une revue

voir la publication

Quantitative prediction for two-dimensional bacterial genomic displays

Jean-François Mercier, Gary W. Slater, Bénédicte Lafay

Joint 15th IUPAB and 5th EBSA International Biophysics Congress .

2005

Acte de congrès

voir la publication

Intron size and exon evolution in Drosophila

Gabriel Marais, P. Nouvellet, P.D. Keightley, B. Charlesworth

Genetics . 170 : 481-485

2005

Article dans une revue

voir la publication

A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants

M. Nicolas, Gabriel Marais, V. Hykelova, B. Janousek, V. Laporte, B. Vyskot...

PLoS Biology . 3 : 0047-0056

2005

Article dans une revue

voir la publication

A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.

Michael Nicolas, Gabriel Marais, Vladka Hykelova, Bohuslav Janousek, Valérie Laporte, Boris Vyskot...

PLoS Biology . 3 : 0001-0010

DOI: 10.1371/journal.pbio.0030004

2005

Article dans une revue

voir la publication

Steps in the evolution of heteromorphic sex chromosomes

D. Charlesworth, B. Charlesworth, Gabriel Marais

Heredity . 95 : 118-128

2005

Article dans une revue

voir la publication

A first approach to finding common motifs with gaps,

Costas Iliopoulos, J. Mchugh, Pierre Peterlongo, Nadia Pisanti, W. Rytter, Marie-France Sagot

International Journal of Foundations of Computer Science . 16 ( 6 ) : 1145--1155

2005

Article dans une revue

voir la publication

Molecular polymorphism in Drosophila melanogaster and D. simulans: what have we learned from recent studies?

Sylvain Mousset, N. Derome

Genetica . 120 : 79-86

2004

Article dans une revue

voir la publication

The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae

J.F. Baines, A. Das, Sylvain Mousset, W. Stephan

Genetics . 168 : 1987-1998

2004

Article dans une revue

voir la publication

A test of neutrality and constant population size based on the mismatch distribution

Sylvain Mousset, N. Derome, M. Veuille

Molecular Biology and Evolution . 21 : 724-731

2004

Article dans une revue

voir la publication

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Céline Keime, Francesca Damiola, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon

BMC Bioinformatics . 5 : 143

DOI: 10.1186/1471-2105-5-143

2004

Article dans une revue

voir la publication

The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology

Frédéric Mallet, O. Bouton, S. Prudhomme, V. Cheynet, G. Oriol, B. Bonnaud...

Proceedings of the National Academy of Sciences of the United States of America . 101 : 1731-1736

2004

Article dans une revue

voir la publication

Evidence that functional transcription units cover at least half of the human genome

M. Sémon, L. Duret

Trends in Genetics . 20 : 229-232

2004

Article dans une revue

voir la publication

The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny

E. Belle, L. Duret, N. Galtier, A. Eyre-Walker

Journal of Molecular Evolution . 58 : 653-660

2004

Article dans une revue

voir la publication

Identitag a relational database for SAGE tag identification and interspecies comparison of SAGE libraries

C. Keime, F. Damiola, Dominique Mouchiroud, L. Duret, Olivier Gandrillon

BMC Bioinformatics . 5 : 1-12

2004

Article dans une revue

voir la publication

ROSO : Research on Optimized Oligonucleotide Probes for Microarrays

N. Reymond, H. Charles, L. Duret, Federica Calevro, G. Beslon, J.-M. Fayard

Bioinformatics . 20 : 271-273

2004

Article dans une revue

voir la publication

Grid as a bioinformatic tool

N. Jacq, Christophe Blanchet, C. Combet, E. Cornillot, L. Duret, K. Kurata...

Parallel Computing . 30 : 1093-1107

2004

Article dans une revue

voir la publication

Efficient Extraction of Structured Motifs Using Box-links

A. Carvalho, A.T. Freitas, A.L. Oliveira, M.-F. Sagot

International Symposium on String Processing and Information Retrieval : SPIRE . 3246 : 267-268

DOI: 10.1007/978-3-540-30213-1_37

2004

Acte de congrès

voir la publication

A first approach to finding common motifs with Gaps

Costas S. Iliopoulos, James Mchugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot

Prague Stringology Conference 2004 . : 88-97

2004

Acte de congrès

voir la publication

GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

MADE4: an R package for multivariate analysis of gene expression data

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

Type I Polyketide Synthases May Have Evolved Through Horizontal Gene Transfer

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

Phylogeography and taxonomic status of Niphargus virei (subterranean amphipod).

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes

De la prévalence aux valeurs prédictives: L`antibiogramme face à l`évolution de la résistance aux antibiotiques

Site Interdependence Attributed to Tertiary Structure in Amino Acid Sequence Evolution

A bunch of fun-guys: the whole-genome view of yeast evolution

Examining bacterial species under the specter of gene transfer and exchange

Quantitative prediction for two-dimensional bacterial genomic displays

Intron size and exon evolution in Drosophila

A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants

A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.

Steps in the evolution of heteromorphic sex chromosomes

A first approach to finding common motifs with gaps,

Molecular polymorphism in Drosophila melanogaster and D. simulans: what have we learned from recent studies?

The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae

A test of neutrality and constant population size based on the mismatch distribution

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology

Evidence that functional transcription units cover at least half of the human genome

The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny

Identitag a relational database for SAGE tag identification and interspecies comparison of SAGE libraries

ROSO : Research on Optimized Oligonucleotide Probes for Microarrays

Grid as a bioinformatic tool

Efficient Extraction of Structured Motifs Using Box-links

A first approach to finding common motifs with Gaps