GECO Génomique Computationnelle et Evolutive

Multiple alignments for structural functional or phylogenetic analyses of homologous sequences

L. Duret, S. Abdeddaim

incollection . -- : 51-76

2000

Article dans une revue

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Sequence of the Small Subunit Ribosomal RNA Gene of Perkinsus atlanticus-like Isolated from Carpet Shell Clam in Galicia Spain

A. Figueras, G. Lorenzo, M.C. Ordas, Manolo Gouy, B. Novoa

Marine Biotechnology . 2 : 419-428

DOI: 10.1007/s101260000015

2000

Article dans une revue

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Phylogénies moléculaires et génomes

Céline Brochier-Armanet, H. Philippe

incollection . 206 : 50-53

2000

Article dans une revue

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The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

Céline Brochier, Hervé Philippe, David Moreira

Trends in Genetics . 16 ( 12 ) : 529-533

DOI: 10.1016/s0168-9525(00)02142-9

2000

Article dans une revue

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Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

Bénédicte Lafay, John C. Atherton, Paul M. Sharp

Microbiology . 146 ( Pt 4) : 851-60

2000

Article dans une revue

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Molecular Systematics of sponges (Porifera)

Carole Borchiellini, Catherine Chombard, Bénédicte Lafay, Nicole Boury-Esnault

Hydrobiologia . 420 ( 1 ) : 15-27

DOI: 10.1023/A:1003996517083

2000

Article dans une revue

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A nonhyperthermophilic common ancestor to extant life forms

N. Galtier, N. Tourasse, Manolo Gouy

Science . 283 ( 5399 ) : 220-221

DOI: 10.1126/science.283.5399.220

1999

Article dans une revue

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Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes

N.J. Tourasse, Manolo Gouy

Molecular Phylogenetics and Evolution . 13 : 159-168

DOI: 10.1006/mpev.1999.0675

1999

Article dans une revue

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Characterization of Unexpected Growth of Escherichia coli O157:H7 by Modeling

M. Cornu, Marie Laure Delignette-Muller, Jean-Pierre Flandrois

Applied and Environmental Microbiology . 65 : 5322-5327

1999

Article dans une revue

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A model describing the relationship between regrowth lag time and mild temperature increase for Listeria monocytogenes

S. Breand, G. Fardel, Jean-Pierre Flandrois, L. Rosso, R. Tomassone

International Journal of Food Microbiology . 46 : 251-261

1999

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Synonymous codon usage variation among Giardia lamblia genes and isolates.

Bénédicte Lafay, Paul M. Sharp

Molecular Biology and Evolution . 16 ( 11 ) : 1484-95

1999

Article dans une revue

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Retrotransposons and retroviruses: analysis of the envelope gene

E. Lerat, P. Capy

Molecular Biology and Evolution . 16 : 1198-1207

1999

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Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN

Jean-Pierre Rouault, Patricia Kuwabara, Olga Sinilnikova, Laurent Duret, Danielle Thierry-Mieg, Marc Billaud

Current Biology - CB . 9 ( 6 ) : 329-334

DOI: 10.1016/S0960-9822(99)80143-2

1999

Article dans une revue

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Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans

S.J. Wheelan, M.S. Boguski, L. Duret, W. Makalowski

Gene . 238 : 163-170

1999

Article dans une revue

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Molecular characterization and placental expression of HERV-W a new human endogenous retrovirus family

J.L. Blond, F. Beseme, L. Duret, O. Bouton, F. Bedin, H. Perron...

Journal of Virology . 73 : 1175-1185

1999

Article dans une revue

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HOVERGEN: comparative analysis of homologous vertebrate genes

L. Duret, G. Perrière, Manolo Gouy

incollection . 978-0-7923-8573-8 : 21-35

DOI: 10.1007/0-306-46903-0_3

1999

Chapitre d'ouvrage

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Expression pattern and surprisingly gene length shape codon usage in Caenorhabditis Drosophila and Arabidopsis

L. Duret, Dominique Mouchiroud

Proceedings of the National Academy of Sciences of the United States of America . 96 : 4482-4487

1999

Article dans une revue

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Promoter sequences and algorithmical methods for identifying them

A. Vanet, L. Marsan, M.-F. Sagot

Research in Microbiology . 150 : 779-799

1999

Article dans une revue

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JaDis: computing distances between nucleic acid sequences

I. Goncalves, M. Robinson, G. Perrière, Dominique Mouchiroud

Bioinformatics . 15 : 424-425

1999

Article dans une revue

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Is the evolution of transposable elements modular?

E. Lerat, F. Brunet, C. Bazin, P. Capy

Genetica . 107 : 15-25

1999

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Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.

Bénédicte Lafay, Andrew T. Lloyd, Michael J. Mclean, Kevin M. Devine, Paul M. Sharp, Kenneth H. Wolfe

Nucleic Acids Research . 27 ( 7 ) : 1642-9

1999

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New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling

L. Duret, N. Guex, M.C. Peitsch, A. Bairoch

Genome Research . 8 : 348-353

1998

Article dans une revue

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Highly conserved RNA sequences that are sensors of environmental stress

A. Spicher, O.M. Guicherit, L. Duret, A. Aslanian, E.M. Sanjines, N.C. Denko...

Molecular and Cellular Biology . 18 : 7371-7382

1998

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Sensitivity of the relative-rate test to taxonomic sampling

M. Robinson, Manolo Gouy, Christian Gautier, Dominique Mouchiroud

Molecular Biology and Evolution . 15 ( 9 ) : 1091-1098

DOI: 10.1093/oxfordjournals.molbev.a026016

1998

Article dans une revue

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Microsporidia amitochondrial protists possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin

E. Peyretaillade, V. Broussolle, P. Peyret, G. Metenier, Manolo Gouy, Christian Vivarès

Molecular Biology and Evolution . 15 : 683-689

DOI: 10.1093/oxfordjournals.molbev.a025971

1998

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Saccharomyces boulardii Fungemia in a Patient Receiving Ultra‐levure Therapy

Jean-Pierre Flandrois, I. Fredenucci, M. Chomarat, C. Boucaud

Clinical Infectious Diseases . 27 ( 1 ) : 222-223

DOI: 10.1086/517685

1998

Article dans une revue

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Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern Australia

Bénédicte Lafay, Jeremy J. Burdon

Applied and Environmental Microbiology . 64 ( 10 ) : 3989-97

1998

Article dans une revue

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What is the state of the art in molecular systematics of marine Porifera ?

Nicole Boury-Esnault, Carole Borchiellini, Catherine Chombard, Bénédicte Lafay

Hydrobiologia .

1998

Acte de congrès

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Identifying satellites and periodic repetitions in biological sequences

M.-F. Sagot, E.W. Myers

Journal of Computational Biology . 5 : 539-554

1998

Article dans une revue

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Spelling Approximate Repeated or Common Motifs Using a Suffix Tree

M.-F. Sagot

incollection . 1380 : 374-390

1998

Article dans une revue

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GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

Multiple alignments for structural functional or phylogenetic analyses of homologous sequences

Sequence of the Small Subunit Ribosomal RNA Gene of Perkinsus atlanticus-like Isolated from Carpet Shell Clam in Galicia Spain

Phylogénies moléculaires et génomes

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

Molecular Systematics of sponges (Porifera)

A nonhyperthermophilic common ancestor to extant life forms

Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes

Characterization of Unexpected Growth of Escherichia coli O157:H7 by Modeling

A model describing the relationship between regrowth lag time and mild temperature increase for Listeria monocytogenes

Synonymous codon usage variation among Giardia lamblia genes and isolates.

Retrotransposons and retroviruses: analysis of the envelope gene

Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN

Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans

Molecular characterization and placental expression of HERV-W a new human endogenous retrovirus family

HOVERGEN: comparative analysis of homologous vertebrate genes

Expression pattern and surprisingly gene length shape codon usage in Caenorhabditis Drosophila and Arabidopsis

Promoter sequences and algorithmical methods for identifying them

JaDis: computing distances between nucleic acid sequences

Is the evolution of transposable elements modular?

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling

Highly conserved RNA sequences that are sensors of environmental stress

Sensitivity of the relative-rate test to taxonomic sampling

Microsporidia amitochondrial protists possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin

Saccharomyces boulardii Fungemia in a Patient Receiving Ultra‐levure Therapy

Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern Australia

What is the state of the art in molecular systematics of marine Porifera ?

Identifying satellites and periodic repetitions in biological sequences

Spelling Approximate Repeated or Common Motifs Using a Suffix Tree