Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Thioulouse Jean

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 330472432756

Site internet

Email

Page biblio: Vous pouvez visiter ma page biblio ici :https://jthome.thioulouse.fr/ref/

Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO

ORCID ID: https://orcid.org/0000-0001-7664-05980

IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse

Recherche reproductible: Liste d'articles avec reproductibilité des calculs:

https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/

Livre ade4: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1

Reproductibilité de l'article Evol. Biol. 2021:

Overcoming the Spurious Groups Problem in Between-Group PCA

 

 

Activités de recherche

Mon activité de recherche est centrée sur l’innovation dans le domaine de la méthodologique statistique en biologie. Ces dernières années, je me suis plus particulièrement intéressé aux méthodes d’analyse statistique de la diversité bactérienne. J’ai cependant poursuivi également des développements méthodologiques en informatique, conduisant à la diffusion de logiciels, ainsi que des activités de consultation et de formation dans différents domaines.

Le package R ade4 :ade4

Le package R adegraphics :adegraphics

Le package R ade4TkGUI :ade4TkGUI

 

Publications

Display of 1 to 30 publications on 149 in total

Overcoming the Spurious Groups Problem in Between-Group PCA

Jean Thioulouse, Sabrina Renaud, Anne-Béatrice Dufour, Stéphane Dray

Evolutionary Biology .

DOI: 10.1007/s11692-021-09550-0

Journal article

see the publication

Small-Scale Variability in Bacterial Community Structure in Different Soil Types

Mylène Hugoni, Naoise Nunan, Jean Thioulouse, Audrey Dubost, Danis Abrouk, Jean M F Martins...

Microbial ecology .

DOI: 10.1007/s00248-020-01660-0

Journal article

see the publication

Surface water quality assessment in a semiarid Mediterranean region (Medjerda, Northern Tunisia) using partial triadic analysis

Noura Slimani, Juan José Jiménez, Eric Guilbert, Moncef Boumaiza, Jean Thioulouse

Environmental Science and Pollution Research .

DOI: 10.1007/s11356-020-09326-7

Journal article

see the publication

Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women

Myriam Chiaruzzi, Alexia Barbry, Anaëlle Muggeo, Anne Tristan, Isaline Jacquemond, Cedric Badiou...

Applied and Environmental Microbiology . 86 ( 18 ) : e01249-20

DOI: 10.1128/AEM.01249-20

Journal article

see the publication

Assessing potential surrogates of macroinvertebrate diversity in North-African Mediterranean aquatic ecosystems

Noura Slimani, David Sánchez-Fernández, Eric Guilbert, Moncef Boumaiza, Simone Guareschi, Jean Thioulouse

Ecological Indicators . 101 : 324-329

DOI: 10.1016/j.ecolind.2019.01.017

Journal article

see the publication

Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

Isaline Jacquemond, Anaëlle Muggeo, Gery Lamblin, Anne Tristan, Yves Gillet, Pierre Adrien Bolze...

Scientific Reports . 8 ( 1 ) : 9942

DOI: 10.1038/s41598-018-28116-3

Journal article

see the publication

Multivariate Analysis of Ecological Data with ade4

Jean Thioulouse, Stéphane Dray, Anne-Béatrice Dufour, Aurélie Siberchicot, Thibaut Jombart, Sandrine Pavoine

DOI: 10.1007/978-1-4939-8850-1

Book

see the publication

Raisonner l'utilisation des légumineuses ligneuses pour réhabiliter des sols dégradés en milieu méditerranéen et tropical

Robin Duponnois, Jean Thioulouse, Ezekiel Baudoin, Christine Leroux, Antoine Galiana, Y Prin

Innovations Agronomiques . 60 : 125-131

DOI: 10.15454/1.5138523036590977E12

Journal article

see the publication

adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Aurélie Siberchicot, A. Julien-Laferrière, Ab. Dufour, J. Thioulouse, S. Dray

The R Journal . 9 ( 2 ) : 198-212

DOI: 10.32614/RJ-2017-042

Journal article

see the publication

The use of STATICO and COSTATIS, two exploratory three-ways analysis methods: an application to the ecology of aquatic heteroptera in the Medjerda watershed (Tunisia)

Noura Slimani, Eric Guilbert, Foued El Ayni, Amel Jrad, Moncef Boumaiza, Jean Thioulouse

Environmental and Ecological Statistics . 24 ( 2 ) : 269 - 295

DOI: 10.1007/s10651-017-0370-6

Journal article

see the publication

Impact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities

Sanâa Wahbi, Yves Prin, Jean Thioulouse, Hervé Sanguin, Ezékiel Baudoin, Tasnime Maghraoui...

Frontiers in Plant Science . 7 : 1364

DOI: 10.3389/fpls.2016.01364

Journal article

see the publication

Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties

Amélie Deredjian, Nolwenn Alliot, Laurine Blanchard, Elisabeth Brothier, Makram Anane, Philippe Cambier...

Research in Microbiology . 167 ( 4 ) : 313-324

DOI: 10.1016/j.resmic.2016.01.001

Journal article

see the publication

Bacterial community structure at the microscale in two different soils

Rory Michelland, Jean Thioulouse, Martina Kyselková, Geneviève Grundmann

Microbial ecology . 72 ( 3 ) : 717-724

DOI: 10.1007/s00248-016-0810-0

Journal article

see the publication

Field Application of the Mycorrhizal Fungus Rhizophagus irregularis Increases the Yield of Wheat Crop and Affects Soil Microbial Functionalities

S. Wahbi, Y. Prin, T. Maghraoui, H. Sanguin, Jean Thioulouse, K. Oufdou...

American Journal of Plant Sciences . 06 : 3205-3215

DOI: 10.4236/ajps.2015.619312

Journal article

see the publication

Soil Organic Matter Quality, Structure and Activity of the Denitrifiers Community as Influenced by Decaying Mulched Crop Residues

A. Dieng, E. Baudoin, Jean Thioulouse, D. Brunet, J. Toucet, Sn. Sylla...

Applied Ecology and Environmental Research . 13 : 655-675

Journal article

see the publication

Potentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments

N. Manaut, H. Sanguin, L. Ouahmane, M. Bressan, Jean Thioulouse, E. Baudoin...

Ecological Engineering . 79 : 113-119

Journal article

see the publication

Ectomycorrhizal fungi on the early colonizing shrub Sarcolaena oblongifolia F. facilitate the establishment of an endemic tree Uapaca bojeri L. in Madagascarian highland forests

H. Ramanankierana, R. Baohanta, H. Randriambanona, Y Prin, N. Rakotoarimanga, E. Baudoin...

International Journal of Ecology and Ecosolution . 1 : 1-15

Journal article

see the publication

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.

L. Ranjard, S. Dequiedt, Nicolas Chemidlin Prévost-Bouré, J. Thioulouse, N. P. A. Saby, M. Lelievre...

Nature Communications . 4 : 1434

DOI: 10.1038/ncomms2431

Journal article

see the publication

Méthodes d'analyse multivariée pour l'étude de l'influence de la mycorhizosphère sur la structure et le fonctionnement des communautés bactériennes du sol

Jean Thioulouse, H. Sanguin, Yves Prin, Robin Duponnois

Des champignons symbiotiques contre la désertification. Ecosystèmes mediterranéens, tropicaux et insulaires . 978-2-7099-1949-4 : 474-508

Book chapter

see the publication

The exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa

I. Boudiaf, E. Baudoin, H. Sanguin, A. Beddiar, Jean Thioulouse, A. Galiana...

Soil Biology and Biochemistry . 65 : 172--179

Journal article

see the publication

Ectomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings

N. Diagne, J. Thioulouse, H. Sanguin, Y. Prin, T. Krasova-Wade, S. Sylla...

Soil Biology and Biochemistry . 57 : 468-476

DOI: 10.1016/j.soilbio.2012.08.030

Journal article

see the publication

Australian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?

Robin Duponnois, Ezekiel Baudoin, Hervé Sanguin, Jean Thioulouse, Christine Le Roux, Estelle Tournier...

Bois et Forêts des Tropiques . 318 ( 4 ) : 59-65

Journal article

see the publication

Spatial processes driving soil microbial community assembly on a wide scale

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas N. Saby, Jean Thioulouse, Claudy C. Jolivet, Mélanie M. Lelievre...

4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment .

Conference paper

see the publication

Community ecology in the age of multivariate multiscale spatial analysis

S. Dray, R. Pelissier, P. Couteron, M. -J. Fortin, P. Legendre, P. R. Peres-Neto...

Ecological monographs . 82 ( 3 ) : 257 - 275

DOI: 10.1890/11-1183.1

Journal article

see the publication

Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management

S. Dequiedt, N.P.A. Saby, M. Lelievre, C. Jolivet, J. Thioulouse, B. Toutain...

Global Ecology and Biogeography . 20 : 641-652

Journal article

see the publication

SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS

J. Thioulouse

Annals of Applied Statistics . 5 ( 4 ) : 2300-2325

DOI: 10.1214/10-AOAS372

Journal article

see the publication

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

Lionel Ranjard, Samuel S. Dequiedt, Claudy C. Jolivet, Nicolas P.A. Saby, Jean Thioulouse, Jérôme Harmand...

Sustainable Agriculture Volume 2 . 978-94-007-0393-3 : 857-865

DOI: 10.1007/978-94-007-0394-0_37

Book chapter

see the publication

Biogeographical patterns of soil molecular microbial biomass

Samuel Dequiedt, Nicolas N. Saby, Mélanie M. Lelievre, Claudy C. Jolivet, Jean Thioulouse, Benoit B. Toutain...

Ecology of soil microorganisms : microbes as important drivers of soil processes . : 1 p.

Conference paper

see the publication

Diversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae

C. Valiente-Moro, J. Thioulouse, C. Chauve, L. Zenner

Journal of Medical Entomology . 48 : 788-796

Journal article

see the publication

Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris

Mike Vergnes, Christophe Ginevra, Elisabeth Kay, Philippe Normand, Jean Thioulouse, Sophie Jarraud...

Journal of Clinical Microbiology . 49 ( 1 ) : 315-324

DOI: 10.1128/JCM.01261-10

Journal article

see the publication