
Publications
Display of 1 to 30 publications on 72 in total
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Bioinformatics . 36 ( 18 ) : 4822-4824
Journal article
see the publicationGenome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes
Current Biology - CB . 30 ( 19 ) : R1083-R1085
Journal article
see the publicationTracing Human Ancestral Migrations Using Symbiotic Bacteria
Groupe des Méthodes Pluridisciplinaires Contribuant à l'Archéologie (GMPCA) .
Conference paper
see the publicationQuand les branches de l’arbre du vivant s’entremêlent
Pour la science .
Journal article
see the publicationRecPhyloXML: a format for reconciled gene trees
Bioinformatics . 34 ( 21 ) : 3646-3652
Journal article
see the publicationGene transfers can date the tree of life
Nature Ecology & Evolution . 2 ( 5 ) : 904-909
Journal article
see the publicationGearing up to handle the mosaic nature of life in the quest for orthologs
Bioinformatics . 34 ( 2 ) : 323-329
Journal article
see the publicationAncestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Genome Biology and Evolution . 9 ( 12 ) : 3413 - 3431
DOI: 10.1093/gbe/evx255
Journal article
see the publicationEcological networks to unravel the routes to horizontal transposon transfers
PLoS Biology . 15 ( 2 ) : np
Journal article
see the publicationMaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers
DOI: 10.1101/127548
Other publication
see the publicationDeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies
Genome Biology and Evolution . 9 ( 5 ) : 1312-1319
DOI: 10.1093/gbe/evx069
Journal article
see the publicationHorizontal Gene Transfer and the History of Life
Cold Spring Harbor Perspectives in Biology . 8 ( 4 ) : 1312 - 1319
Journal article
see the publicationGene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Molecular Biology and Evolution . 33 ( 2 ) : 305 - 310
Journal article
see the publicationAncestral Reconstruction: Theory and Practice
Encyclopedia of Evolutionary Biology . : 70–77
Book chapter
see the publicationGC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands
PLoS Genetics . 11 ( 2 ) : 1-20
Journal article
see the publicationThe inference of gene trees with species trees
Systematic Biology . 64 ( 1 ) : e42-e62
Journal article
see the publicationReconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence
BMC Genomics . 16 ( Suppl 10 ) : S9
Journal article
see the publicationGenome-scale phylogenetic analysis finds extensive gene transfer among fungi
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990) . 370 : 20140335 (11 pages)
Journal article
see the publicationA Bayesian Method for Analyzing Lateral Gene Transfer
Systematic Biology . 63 ( 3 ) : 409 - 420
Journal article
see the publicationReductive genome evolution at both ends of bacterial population size spectrum
Nature Reviews Microbiology . 12 ( 12 ) : 841-850
DOI: 10.1038/nrmicro3331
Journal article
see the publicationPhylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. an
International Journal of Systematic and Evolutionary Microbiology . 64 ( Pt 11 ) : 3821-32
Journal article
see the publicationRibosomal proteins: Toward a next generation standard for prokaryotic systematics?
Molecular Phylogenetics and Evolution . 75 : 103 - 117
Journal article
see the publicationSingle acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid
Molecular Phylogenetics and Evolution . 73 : 202-207
Journal article
see the publicationLateral gene transfer, rearrangement, reconciliation
BMC Bioinformatics . 14 ( Suppl 15 ) : S4
Journal article
see the publicationLateral Gene Transfer from the Dead.
Systematic Biology . 62 ( 3 ) : 386-397
Journal article
see the publicationContrasted evolutionary constraints on secreted and non-secreted proteomes of selected Actinobacteria
BMC Genomics . 14 ( 1 )
Journal article
see the publicationEfficient Exploration of the Space of Reconciled Gene Trees.
Systematic Biology . 62 ( 6 ) : 901-912
Journal article
see the publicationGenome-scale coestimation of species and gene trees.
Genome Research . 23 ( 2 ) : 323-330
Journal article
see the publication