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Veber Philippe

Ingénieur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 26 23 44 70

Email

Ingénieur de recherche CNRS

Publications

Display of 1 to 30 publications on 42 in total

Comparative transcriptomics in serial organs uncovers early and pan-organ developmental changes associated with organ-specific morphological adaptation

Marie Sémon, Marion Mouginot, Manon Peltier, Claudine Corneloup, Philippe Veber, Laurent Guéguen...

Nature Communications . 16 ( 1 ) : 768

DOI: 10.1038/s41467-025-55826-w

Journal article

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Phyloformer: Fast, accurate and versatile phylogenetic reconstruction with deep neural networks

Luca Nesterenko, Luc Blassel, Philippe Veber, Bastien Boussau, Laurent Jacob

DOI: 10.1101/2024.06.17.599404

Preprint

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Haemolysis overestimates plasma oxidative stress biomarkers in free-ranging roe deer

Amandine Herrada, Pauline Vuarin, François Débias, Alexia Gache, Philippe Veber, Maryline Pellerin...

Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology . 298 : 111750

DOI: 10.1016/j.cbpa.2024.111750

Journal article

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Evaluation of Methods to Detect Shifts in Directional Selection at the Genome Scale

Louis Duchemin, Vincent Lanore, Philippe Veber, Bastien Boussau

Molecular Biology and Evolution . 40 ( 2 )

DOI: 10.1093/molbev/msac247

Journal article

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Neural Networks beyond explainability: Selective inference for sequence motifs

Antoine Villié, Philippe Veber, Yohann de Castro, Laurent Jacob

Transactions on Machine Learning Research Journal .

DOI: 10.48550/arXiv.2212.12542

Journal article

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Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads

Morgane Touzot, Tristan Lefebure, Thierry Lengagne, Jean Secondi, Adeline Dumet, Lara Konecny-Dupre...

Science of the Total Environment . 818 : 151734

DOI: 10.1016/j.scitotenv.2021.151734

Journal article

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Meta-transcriptomics reveals stress adaptation processes in microbial communities differing in exposure history

Floriane Larras, Elise Billoir, Stefan Lips, Stephan Schreiber, Philippe Veber, Marie Laure Delignette-Muller...

"Ecology and Evolution: New perspectives and societal challenges" SFE2-GfÖ-EEF joint meeting, International conference on ecological sciences .

Conference paper

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Detecting adaptive convergent amino acid evolution

Carine Rey, Vincent Lanore, Philippe Veber, Laurent Guéguen, Nicolas Lartillot, Marie Sémon...

Philosophical Transactions of the Royal Society B: Biological Sciences . 374 ( 1777 ) : 1-11

DOI: 10.1098/rstb.2018.0234

Journal article

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MOSAIC : une plate-forme web pour l’analyse statistique des données d’écotoxicologie. Fiche Thématique N°13

Sandrine Charles, Virgile Baudrot, Philippe Veber

: 4 p.

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Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Veber

Environmental Science and Technology . 51 : 8202-8203

DOI: 10.1021/acs.est.7b02548

Journal article

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Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Ruiz, P. Veber

Environmental Science and Technology . 51 : 4038-4045

DOI: 10.1021/acs.est.6b05326

Journal article

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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Cédric Chauve, Akbar A Rafiey, Adrian A Davin, Celine Scornavacca, Philippe Veber, Bastien Boussau...

DOI: 10.1101/127548

Other publication

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Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

Florence Carrouel, Stéphane Viennot, Julie Santamaria, Philippe Veber, Denis Bourgeois

Frontiers in Microbiology . 7 : 840 - 840

DOI: 10.3389/fmicb.2016.00840

Journal article

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RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Amandine Chatagnon, Philippe Veber, Valérie Morin, Justin Bedő,, Gérard Triqueneaux, Marie Sémon...

Nucleic Acids Research . 43 ( 10 ) : 4833--4854

DOI: 10.1093/nar/gkv370

Journal article

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Host plant specialization matters in the epidemiology of Wolbachia across phytophagous wasps (Hymenoptera: Torymidae)

Thomas Boivin, Hélène Henri, Fabrice Vavre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

8. International Wolbachia Conference . : np

Poster

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Statistical handling of reproduction data for exposure-response modeling

Marie Laure Delignette-Muller, Christelle Lopes, Philippe Veber, Sandrine Charles

Environmental Science and Technology . 48 : 7544-51

DOI: 10.1021/es502009r

Journal article

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Epidemiology of asexuality induced by the endosymbiotic Wolbachia across phytophagous wasp species: host plant specialization matters.

Thomas Boivin, Hélène Henri, Fabrice Vavre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

Molecular Ecology . 23 ( 9 ) : 2362-2375

DOI: 10.1111/mec.12737

Journal article

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BioNLP Shared Task - The Bacteria Track

Robert Bossy, Julien Jourde, Alain-Pierre Manine, Philippe Veber, Erick Alphonse, Maarten van de Guchte...

BMC Bioinformatics . 13 : np

DOI: 10.1186/1471-2105-13-S11-S3

Journal article

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BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming

Julien Jourde, Alain-Pierre Manine, Philippe Veber, Karen Fort, Robert Bossy, Erick Alphonse...

Proceedings of the BioNLP Shared Task 2011 ACL Workshop . 13 9781937284091 : 65-73

Conference paper

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Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming

Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Philippe Veber...

Principles of Knowledge Representation and Reasoning .

Conference paper

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Lagrangian approaches for a class of matching problems in computational biology

Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev

Computers & Mathematics with Applications . 55 ( Issue 5 (March 2008) ) : 1054-1067

DOI: 10.1016/j.camwa.2006.12.103

Journal article

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

BMC Bioinformatics . 9 : nc

DOI: 10.1186/1471-2105-9-228

Journal article

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Optimiser un plan d'expérience à partir de modèles qualitatifs?

Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne

Biofutur . 275 : 27-31

Journal article

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Détection de domaines dans des séquences génomiques : un problème de couverture optimale

Philippe Veber, Sébastien Tempel, Rumen Andonov, Dominique Lavenier, Jacques Nicolas

FRANCORO V/ROADEF 2007 .

Conference paper

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Decision Diagrams for Qualitative Biological Models

Michel Le Borgne, Philippe Veber

: 17

Report

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

: 14

Report

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

Report

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

Journal of Biological Physics and Chemistry . 7 : 37-43

Journal article

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