GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Lartillot Nicolas

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 04 72 44 84 87

Email

Publications

Display of 31 to 60 publications on 73 in total

A mixed relaxed clock model

Nicolas Lartillot, M. J. Phillips, F. Ronquist

Philosophical Transactions of the Royal Society B: Biological Sciences . 371 : 20150132

DOI: 10.1098/rstb.2015.0132

Journal article

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Reply to Halanych et al.

Davide Pisani, Walker Pett, Martin Dohrmann, Roberto Feuda, Omar Rota-Stabelli, Herve Philippe...

Proceedings of the National Academy of Sciences of the United States of America . 113 ( 8 ) : E948-E949

DOI: 10.1073/pnas.1525718113

Journal article

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RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

S. Hohna, M. J. Landis, T. A. Heath, Bastien Boussau, Nicolas Lartillot, B. R. Moore...

Systematic Biology . 65 : 726-36

DOI: 10.1093/sysbio/syw021

Journal article

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Probabilistic models of eukaryotic evolution: time for integration

Nicolas Lartillot

Philosophical Transactions of the Royal Society B: Biological Sciences . 370 ( 1678 ) : 20140338

DOI: 10.1098/rstb.2014.0338

Journal article

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Genomic data do not support comb jellies as the sister group to all other animals

Davide Pisani, Walker Pett, Martin Dohrmann, Roberto Feuda, Omar Rota Stabelli, Herve Philippe...

Proceedings of the National Academy of Sciences of the United States of America . 112 ( 50 ) : 15402-15407

DOI: 10.1073/pnas.1518127112

Journal article

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Reconstructing the Phylogenetic History of Long-Term Effective Population Size and Life-History Traits Using Patterns of Amino Acid Replacement in Mitochondrial Genomes of Mammals and Birds

Benoit Nabholz, Nicole Uwimana, Nicolas Lartillot

Genome Biology and Evolution . 5 ( 7 ) : 1273 - 1290

DOI: 10.1093/gbe/evt083

Journal article

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Lateral Gene Transfer from the Dead.

Gergely J Szöllosi, Eric Tannier, Nicolas Lartillot, Vincent Daubin

Systematic Biology . 62 ( 3 ) : 386-397

DOI: 10.1093/sysbio/syt003

Journal article

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Phylogenetic Patterns of GC-Biased Gene Conversion in Placental Mammals and the Evolutionary Dynamics of Recombination Landscapes

Nicolas Lartillot

Molecular Biology and Evolution . 30 ( 3 ) : 489-502

DOI: 10.1093/molbev/mss239

Journal article

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An Experimentally Tested Scenario for the Structural Evolution of Eukaryotic Cys2His2 Zinc Fingers from Eubacterial Ros Homologs

Fortuna Netti, Gaetano Malgieri, Sabrina Esposito, Maddalena Palmieri, Ilaria Baglivo, Carla Isernia...

Molecular Biology and Evolution . 30 ( 7 ) : 1504 - 1513

DOI: 10.1093/molbev/mst068

Journal article

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Interaction between Selection and Biased Gene Conversion in Mammalian Protein-Coding Sequence Evolution Revealed by a Phylogenetic Covariance Analysis

Nicolas Lartillot

Molecular Biology and Evolution . 30 : 356 - 368

DOI: 10.1093/molbev/mss231

Journal article

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Phylogénie moléculaire

Samuel Blanquart, Alexis Criscuolo, Christophe J Douady, Emmanuel Douzery, Nicolas Lartillot, Herve Philippe...

Biologie évolutive . 9782804101619

Book chapter

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Statistical Potentials for Improved Structurally Constrained Evolutionary Models

Claudia L Kleinman, Nicolas Rodrigue, Nicolas Lartillot, Hervé Philippe

Molecular Biology and Evolution . 27 ( 7 ) : 1546 - 1560

DOI: 10.1093/molbev/msq047

Journal article

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A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

Nicolas Lartillot, Raphaël Poujol

Molecular Biology and Evolution . 28 ( 1 ) : 729 - 744

DOI: 10.1093/molbev/msq244

Journal article

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A Dirichlet Process Covarion Mixture Model and Its Assessments Using Posterior Predictive Discrepancy Tests

Yan Zhou, Henner Brinkmann, Nicolas Rodrigue, Nicolas Lartillot, Herve Philippe

Molecular Biology and Evolution . 27 ( 2 ) : 371-384

DOI: 10.1093/molbev/msp248

Journal article

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Fast optimization of statistical potentials for structurally constrained phylogenetic models

Cécile Bonnard, Claudia L. Kleinman, Nicolas Rodrigue, Nicolas Lartillot

BMC Evolutionary Biology . 9 ( 1 ) : 227

DOI: 10.1186/1471-2148-9-227

Journal article

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Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons

Nicolas Rodrigue, Claudia L Kleinman, Hervé Philippe, Nicolas Lartillot

Molecular Biology and Evolution . 26 ( 7 ) : 1663 - 1676

DOI: 10.1093/molbev/msp078

Journal article

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Improvement of Molecular Phylogenetic Inference and the Phylogeny of Bilateria

Nicolas Lartillot, Herve Philippe

Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990) . 363 ( 1496 ) : 1463-1472

DOI: 10.1098/rstb.2007.2236

Journal article

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Uniformization for Sampling Realizations of Markov Processes: Applications to Bayesian Implementations of Codon Substitution Models

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Bioinformatics . 24 ( 1 ) : 56-62

DOI: 10.1093/bioinformatics/btm532

Journal article

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Phylogenetic Mixture Models for Proteins

Quang Le Si, Nicolas Lartillot, Olivier Gascuel

Philosophical Transactions of the Royal Society B: Biological Sciences . 363 : 3965-3976

DOI: 10.1098/rstb.2008.0180

Journal article

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Bayesian computation for statistical models with intractable normalizing constants

Yves Atchade, Nicolas Lartillot, Christian Robert

Preprint

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A Site- and Time-Heterogeneous Model of Amino Acid Replacement

Samuel Blanquart, Nicolas Lartillot

Molecular Biology and Evolution . 25 ( 5 ) : 842-858

DOI: 10.1093/molbev/msn018

Journal article

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Additional molecular support for the new chordate phylogeny.

Frédéric Delsuc, Georgia Tsagkogeorga, Nicolas Lartillot, Herve Philippe

Genesis . 46 ( 11 ) : 592-604

DOI: 10.1002/dvg.20450

Journal article

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Parallel Adaptations to High Temperatures in the Archean Eon

Bastien Boussau, Samuel Blanquart, Anamaria Necsulea, Nicolas Lartillot, Manolo Gouy

Nature . 456 ( 7224 ) : 942-945

DOI: 10.1038/nature07393

Journal article

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A General Comparison of Relaxed Molecular Clock Models

Thomas Lepage, David Bryant, Herve Philippe, Nicolas Lartillot

Molecular Biology and Evolution . 24 ( 12 ) : 2669-2680

DOI: 10.1093/molbev/msm193

Journal article

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Exploring Fast Computational Strategies for Probabilistic Phylogenetic analysis

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Systematic Biology . 56 : 711-726

DOI: 10.1080/10635150701611258

Journal article

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