GECO Evolutionary and Computational Genomics

Baobab Group

Peres Sabine

Professeur des universités

UCBL

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 04 72 44 81 42

Email

Systems biology - Biological networks modelling

Metabolic Pathway Analysis

  • Constraint-based modelling
  • Logic programming
  • Thermodynamics

Cancer metabolism

  • Metabolic rerouting
  • Dynamic modelling
  • Metabolic therapies

Publications

Display of 31 to 50 publications on 50 in total

Représentation systémique multi-échelle des processus biologiques de la bactérie

Vincent J. Henry, Arnaud Ferré, Christine Froidevaux, Anne Goelzer, Vincent V. Fromion, Sarah Cohen-Boulakia...

IC2016 - Ingénierie des Connaissances .

Conference paper

see the publication

Représentation systémique multi-échelle des processus biologiques de la bactérie

Vincent Henry, Arnaud Ferré, Christine Froidevaux, Anne Goelzer, Vincent Fromion, Sarah Cohen-Boulakia...

IC201: 27es Journées francophones d'Ingénierie des Connaissances .

Conference paper

see the publication

Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells

Bertrand Beauvoit, Sophie Colombie, Razanne Issa, Jean-Pierre Mazat, Christine Nazaret, Sabine Pérès

advances in Systems and Synthetic Biology .

Conference paper

see the publication

Cell cycle progression is regulated by intertwined redox oscillators

Jorgelindo da Veiga Moreira, Sabine Pérès, Jean-Marc Steyaert, Erwan Bigan, Loïc Paulevé, Marcel Levy Nogeira...

Theoretical Biology and Medical Modelling . 12 ( 1 ) : 10

DOI: 10.1186/s12976-015-0005-2

Journal article

see the publication

SAT-Based Metabolics Pathways Analysis without Compilation

Sabine Pérès, Morterol Martin, Laurent Simon

CMSB 2014 .

Conference paper

see the publication

Systematic study of a metabolic network

Bertrand P Beauvoit, Sophie Colombié, Jean-Pierre Mazat, Christine Nazaret, Sabine Pérès

advances in Systems and Synthetic Biology . 978-2-7598-1201-1 : 173 p.

Conference paper

see the publication

Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation

Sabine Pérès, Liza L. Felicori, Franck Molina

PLoS ONE . 8 ( 10 )

DOI: 10.1371/journal.pone.0076143

Journal article

see the publication

Analysis of metabolic networks using elementary flux modes

Sabine Pérès

Advances in systems and synthetic biology . : 165--170

Conference paper

see the publication

Analysis of the variability of human normal urine by 2D-GE reveals a "public" and a "private" proteome

Laurence Molina, Nicolas Salvetat, Randa Ben Ameur, Sabine Pérès, Nicolas Sommerer, Faycal Jarraya...

Journal of Proteomics . 75 ( 1 ) : 70 - 80

DOI: 10.1016/j.jprot.2011.06.031

Journal article

see the publication

ACoM: A classification method for elementary flux modes based on motif finding

Sabine Pérès, Francois Vallee, Marie M. Beurton-Aimar, Jean-Pierre Mazat

BioSystems . 103 ( 3 ) : 410-419

Journal article

see the publication

BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks

Stéphanie Rialle, Liza Felicori, Camila Dias-Lopes, Sabine Peres, Sanaâ El Atia, Alain Thierry...

Bioinformatics . 26 ( 18 ) : 2298-2304

DOI: 10.1093/bioinformatics/btq409

Journal article

see the publication

Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actions

Sabine Peres, Liza Felicori, Stéphanie Rialle, Elodie Jobard, Franck Molina

Bioinformatics . 26 ( 12 ) : 1542-1547

DOI: 10.1093/bioinformatics/btq169

Journal article

see the publication

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

Cécile Fleury, Marie Francoise M. F. Gautier, Pierre Larmande, Sabine Pérès, Frédéric F. de Lamotte, Franck Molina...

Séminaire Génomique Végétale .

Conference paper

see the publication

Géographie des interfaces. Une nouvelle vision du territoire

C. Lampin-Maillet, Sabine Pérès, J.P. Ferrier, P. Allard

978-2-7592-0857-9 : 168

Book

see the publication

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

Cécile Fleury, Marie Francoise M. F. Gautier, Pierre Larmande, Sabine Pérès, Frédéric F. de Lamotte, Franck Molina...

JOBIM2010 .

Conference paper

see the publication

Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

Cécile Fleury, Marie Francoise M. F. Gautier, Pierre Larmande, Sabine Pérès, Frédéric F. de Lamotte, Franck Molina...

18. Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) .

Conference paper

see the publication

A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics

Sabine Peres, Laurence Molina, Nicolas Salvetat, Claude Granier, Franck Molina

BMC Bioinformatics . 9 ( 1 ) : 460

DOI: 10.1186/1471-2105-9-460

Journal article

see the publication

Structure et modélisation des réseaux métaboliques

Jean-Pierre Mazat, Christine Nazaret, Sabine Pérès

Biofutur . ( 275 ) : 29-33

Journal article

see the publication

Mycotoxin fumonisin B-1 selectively down-regulates the basal IL-8 expression in pig intestine: in vivo and in vitro studies

S Bouhet, E Le Dorze, Sabine Pérès, Jm Fairbrother, Isabelle P. Oswald

Food and Chemical Toxicology . 44 ( 10 ) : 1768-1773

Journal article

see the publication

Contribution of Computational Tree Logic to Biological Regulatory Networks: Example from Pseudomonas Aeruginosa

Sabine Peres, Comet Jean-Paul

Lecture Notes in Computer Sciences . 2602 : 47-56

DOI: 10.1007/3-540-36481-1_5

Journal article

see the publication