Technical services

Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae

Vincent Raquin, Hélène Henri, Marine Vallat, François Leulier, Patricia Gibert, Natacha Kremer

Ecology and Evolution . 8 ( 20 ) : 10067 - 10074

DOI: 10.1002/ece3.4453

2018

Journal article

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Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis

Natacha Kremer, Eric Koch, Adil El Filali, Lawrence Zhou, Elizabeth Heath-Heckman, Edward Ruby...

mSystems . 3 ( 5 )

DOI: 10.1128/mSystems.00165-18

2018

Journal article

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Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Carlos Vargas-Chavez, Nicolas Parisot, C. Goubert, Patrice Baa-Puyoulet, Severine Balmand, M. Boulesteix...

VI Meeting of the Spanish Society for Evolutionary Biology (SESBE) .

2018

Poster

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MareyMap online: A user-friendly web application and database service for estimating recombination rates using physical and genetic maps

Aurélie Siberchicot, Adrien Bessy, Laurent Gueguen, Gabriel A. B. Marais

Genome Biology and Evolution . 9 ( 10 ) : 2506-2509

DOI: 10.1093/gbe/evx178

2017

Journal article

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Inferring the timing of territoriality and rut in male roe deer from movements? Some preliminary results - and new perspectives

Nicolas Morellet, Vincent Miele, Christophe Bonenfant

6. EURODEER meeting .

2017

Conference paper

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Immunosenescence patterns differ between populations but not between sexes in a long-lived mammal

Louise Cheynel, Jean-François Lemaître, Jean-Michel Gaillard, Benjamin Rey, Gilles Bourgoin, Hubert Ferté...

Scientific Reports . 7 ( 1 )

DOI: 10.1038/s41598-017-13686-5

2017

Journal article

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Genome sequencing of the behaviour manipulating virus LbFV reveals a possible new virus family

D. Lepetit, B. Gillet, S. Hughes, K. Kraaijeveld, Julien Varaldi

Genome Biology and Evolution . 8 : 3718-3738

DOI: 10.1093/gbe/evw277

2017

Journal article

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adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Aurélie Siberchicot, A. Julien-Laferrière, Ab. Dufour, J. Thioulouse, S. Dray

The R Journal . 9 ( 2 ) : 198-212

DOI: 10.32614/RJ-2017-042

2017

Journal article

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Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Veber

Environmental Science and Technology . 51 : 8202-8203

DOI: 10.1021/acs.est.7b02548

2017

Journal article

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Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Ruiz, P. Veber

Environmental Science and Technology . 51 : 4038-4045

DOI: 10.1021/acs.est.6b05326

2017

Journal article

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High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Clément Goubert, Hélène Henri, Guillaume Minard, Claire Valiente Moro, Patrick Mavingui, Cristina Vieira...

Molecular Ecology . 26 ( 15 ) : 1-14

DOI: 10.1111/mec.14184

2017

Journal article

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Ecological networks to unravel the routes to horizontal transposon transfers

Samuel Venner, Vincent Miele, Christophe Terzian, Christian Biemont, Vincent Daubin, Cedric Feschotte...

PLoS Biology . 15 ( 2 ) : np

DOI: 10.1371/journal.pbio.2001536

2017

Journal article

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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Helene Lopez-Maestre, Camille Marchet, Vincent Miele...

Algorithms for Molecular Biology . 12 ( 1 ) : 2

DOI: 10.1186/s13015-017-0091-2

2017

Journal article

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Statistical clustering of temporal networks through a dynamic stochastic block model

Catherine Matias, Vincent Miele

Journal of the Royal Statistical Society: Series B . 79 ( 4 ) : 1119–1141

DOI: 10.1111/rssb.12200

2017

Journal article

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Revealing the hidden structure of dynamic ecological networks

Vincent Miele, Catherine Matias

Royal Society Open Science . 4 : 170251

DOI: 10.1098/rsos.170251

2017

Journal article

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Réseaux et connectivité

Etienne Edouard Cossart, Colin Fontaine, Grégor Marchand, Marie Balasse, Stéphanie Bréhard, Claire Manen...

Prospectives de l’Institut Écologie et environnement du CNRS . : 187-193

2017

Book chapter

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Maternal age affects offspring nutrient dynamics

Doriane Muller, David Giron, Emmanuel Desouhant, Benjamin Rey, Jérome Casas, Nicolas Lefrique...

Journal of Insect Physiology . 101 : 123 - 131

DOI: 10.1016/j.jinsphys.2017.07.011

2017

Journal article

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Age-dependent associations between telomere length and environmental conditions in roe deer

Rachael V Wilbourn, Hannah Froy, Marie-Christina Mcmanus, Louise Cheynel, Jean-Michel Gaillard, Emmanuelle Gilot-Fromont...

Biology Letters . 13 ( 9 ) : 20170434

DOI: 10.1098/rsbl.2017.0434

2017

Journal article

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Uncoupling effect of palmitate is exacerbated in skeletal muscle mitochondria of sea-acclimatized king penguins (Aptenodytes patagonicus)

Benjamin Rey, Claude H. B. Duchamp, Damien Roussel

Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology . 211 : 56-60

DOI: 10.1016/j.cbpa.2017.06.009

2017

Journal article

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Complication-related removal of totally implantable venous access port systems: Does the interval between placement and first use and the neutropenia-inducing potential of chemotherapy regimens influence their incidence? A four-year prospective study of 4

A. Kakkos, L. Bresson, D. Hudry, S. Cousin, C. Lervat, E. Bogart...

EJSO - European Journal of Surgical Oncology . 43 ( 4 ) : 689-695

DOI: 10.1016/j.ejso.2016.10.020

2017

Journal article

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Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Florent Lassalle, Rémi Planel, Simon Penel, David Chapulliot, Valérie Barbe, Audrey Dubost...

Genome Biology and Evolution . 9 ( 12 ) : 3413 - 3431

DOI: 10.1093/gbe/evx255

2017

Journal article

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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Cédric Chauve, Akbar A Rafiey, Adrian A Davin, Celine Scornavacca, Philippe Veber, Bastien Boussau...

DOI: 10.1101/127548

2017

Other publication

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Identification of misexpressed genetic elements in hybrids between Drosophila-related species

Hélène Lopez-Maestre, Elias Alberto Gutierrez Carnelossi, Vincent Lacroix, Nelly Burlet, Bruno Mugat, Séverine Chambeyron...

Scientific Reports . 7 : 40618

DOI: 10.1038/srep40618

2017

Journal article

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Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies

Samuel Venner, A. Siberchicot, P.F. Pélisson, E. Schermer, Marie-Claude Bel-Venner, M. Nicolas...

American Naturalist . 188 ( 1 ) : 66-75

DOI: 10.1086/686684

2016

Journal article

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Inferring the timing of territoriality and rut in male roe deer from movements?

Nicolas Morellet, Christophe Bonenfant, Vincent Miele, Marco Heurich, Stefano Focardi

8. EURODEER meeting .

2016

Conference paper

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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Eric Rivals, Claire Lemaitre...

GigaScience . 5 ( 1 )

DOI: 10.1186/s13742-015-0105-2

2016

Journal article

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Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

Florence Carrouel, Stéphane Viennot, Julie Santamaria, Philippe Veber, Denis Bourgeois

Frontiers in Microbiology . 7 : 840 - 840

DOI: 10.3389/fmicb.2016.00840

2016

Journal article

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How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

Sonia Kéfi, Vincent Miele, Evie Wieters, Sergio Navarrete, Eric Berlow

PLoS Biology . 14 ( 8 ) : e1002527

DOI: 10.1371/journal.pbio.1002527

2016

Journal article

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Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)

Benjamin Rey, Cyril Dégletagne, Jacques Bodennec, Pierre-Axel Monternier, Mathieu Mortz, Damien Roussel...

Free Radical Biology and Medicine . 97 : 577–587

DOI: 10.1016/j.freeradbiomed.2016.07.015

2016

Journal article

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Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life

Benjamin Rey, Cyril Dégletagne, Claude Duchamp

Data in Brief . 9 : 549–555

DOI: 10.1016/j.dib.2016.09.021

2016

Journal article

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Publications

Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae

Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

MareyMap online: A user-friendly web application and database service for estimating recombination rates using physical and genetic maps

Inferring the timing of territoriality and rut in male roe deer from movements? Some preliminary results - and new perspectives

Immunosenescence patterns differ between populations but not between sexes in a long-lived mammal

Genome sequencing of the behaviour manipulating virus LbFV reveals a possible new virus family

adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Ecological networks to unravel the routes to horizontal transposon transfers

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Statistical clustering of temporal networks through a dynamic stochastic block model

Revealing the hidden structure of dynamic ecological networks

Réseaux et connectivité

Maternal age affects offspring nutrient dynamics

Age-dependent associations between telomere length and environmental conditions in roe deer

Uncoupling effect of palmitate is exacerbated in skeletal muscle mitochondria of sea-acclimatized king penguins (Aptenodytes patagonicus)

Complication-related removal of totally implantable venous access port systems: Does the interval between placement and first use and the neutropenia-inducing potential of chemotherapy regimens influence their incidence? A four-year prospective study of 4

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Identification of misexpressed genetic elements in hybrids between Drosophila-related species

Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies

Inferring the timing of territoriality and rut in male roe deer from movements?

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

Hormetic response triggers multifaceted anti-oxidant strategies in immature king penguins (Aptenodytes patagonicus)

Transcriptomic data analysis and differential gene expression of antioxidant pathways in king penguin juveniles (Aptenodytes patagonicus) before and after acclimatization to marine life