Lobry Jean

Oak masting drivers vary between populations depending on their climatic environments

Emilie Fleurot, Jean R Lobry, Vincent Boulanger, François Débias, Camille Mermet-Bouvier, Thomas Caignard...

Current Biology - CB . 33 ( 6 ) : 1117-1124.e4

DOI: 10.1016/j.cub.2023.01.034

2023

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The CV is dead, long live the CV !

Jean R Lobry, Marie‐claude Bel‐venner, Michał Bogdziewicz, Andrew Hacket‐pain, Samuel Venner

Methods in Ecology and Evolution .

DOI: 10.1111/2041-210X.14197

2023

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Enseigner les recueil des données : explorer la variabilité biologique ... au chaud, dans une salle de cours

Anne-Béatrice Dufour, Jean R Lobry, Isabelle Amat

Statistique et Enseignement . 8 ( 2 ) : 79-85

2017

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Estimating the Number of Contributors to Forensic DNA Mixtures: Does Maximum Likelihood Perform Better Than Maximum Allele Count?

Hinda Haned, Laurent Pène, J.R. Lobry, Anne-Béatrice Dufour, D. Pontier

Journal of Forensic Sciences . 56 ( 1 ) : 23-28

DOI: 10.1111/j.1556-4029.2010.01550.x

2011

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Serotyping of Toxoplasma gondii: striking homogeneous pattern between symptomatic and asymptomatic infections within Europe and South America.

Stéphane Morisset, François Peyron, Jean R Lobry, Justus Garweg, Josette Ferrandiz, Karine Musset...

Microbes and Infection . 10 ( 7 ) : 742-7

DOI: 10.1016/j.micinf.2008.04.001

2008

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From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals

Anne-Béatrice Dufour, J.R. Lobry

Biométrie Humaine et Anthropologie - revue de la Société de biométrie humaine . 26 : 33-39

2008

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An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations

H. Devillers, J.R. Lobry, F. Menu

Journal of Theoretical Biology . 255 : 307-315

2008

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A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A. Necşulea, J.R. Lobry

Molecular Biology and Evolution . 24 : 2169-2179

2007

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A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A. Necşulea, J.R. Lobry

incollection . 7 : 379-381

2007

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SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis

D. Charif, J.R. Lobry

incollection . -- : 207-232

2007

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Serotyping of Toxoplasma gondii in chronically infected pregnant women: predominance of type II in Europe and types I and III in Colombia (South America).

François Peyron, Jean R Lobry, Karine Musset, Josette Ferrandiz, Jorge Enrique Gomez-Marin, Eskild Petersen...

Microbes and Infection . 8 ( 9-10 ) : 2333-40

DOI: 10.1016/j.micinf.2006.03.023

2006

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UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes

L. Palmeira, Laurent Guéguen, J.R. Lobry

Molecular Biology and Evolution . 23 : 2214-2219

2006

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No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

M. Sémon, J.R. Lobry, L. Duret

Molecular Biology and Evolution . 23 : 523-529

2006

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Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major

A. Necşulea, J.R. Lobry

Gene . 385 : 28-40

2006

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Serotyping of Toxoplasma gondii in chronically infected pregnant women : predominance of type II in Europe and types I and III in Colombia (South America)

F. Peyron, J.R. Lobry, K. Musset, J. Ferrandiz, J.E. Gómez-Marín, E. Petersen...

Microbes and Infection . 8 : 2333-2340

2006

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Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

J.R. Lobry, A. Necşulea

Gene . 385 : 128-136

2006

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Online synonymous codon usage analyses with the ade4 and seqinR packages

D. Charif, J. Thioulouse, J.R. Lobry, G. Perrière

Bioinformatics . 21 : 545-547

2005

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Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

O. Zagordi, J.R. Lobry

Gene . 347 : 175-182

2005

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Life history traits and genome structure: aerobiosis and G+C content in bacteria

J.R. Lobry

Lecture Notes in Computer Science . 3039 : 679-686

2004

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Forcing reversibility in the no strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

O. Zagordi, J. R. Lobry

2004

Pré-publication

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Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

J.R. Lobry, D. Chessel

Journal of Applied Genetics . 44 : 235-261

2003

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Polarisation of prokaryotic chromosomes

J.R. Lobry, J.M. Louarn

Current Opinion in Microbiology . 6 : 101-108

2003

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Asymmetric directional mutation pressures in bacteria

J.R. Lobry, N. Sueoka

Genome Biology . 26 : 1-14

2002

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Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

A.C. Frank, J.R. Lobry

Bioinformatics . 16 : 560-561

2000

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Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids

M. Picardeau, J.R. Lobry, B.J. Hinnebusch

Genome Research . 10 : 1594-1604

2000

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Genomic landscapes

Jean R Lobry

Microbiology Today . 26 : 164-165

1999

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Intra-strand biases in bacteriophage T4 genome

T. Kano-Sueoka, J.R. Lobry, N. Sueoka

Gene . 238 : 59-64

1999

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Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome

M. Picardeau, J.R. Lobry, B.J. Hinnebusch

Molecular Microbiology . 32 : 437-445

1999

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Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant

J.R. Lobry, C. Lobry

Molecular Biology and Evolution . 16 : 719-723

1999

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Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

A.C. Frank, J.R. Lobry

Gene . 238 : 65-77

1999

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Publications

Oak masting drivers vary between populations depending on their climatic environments

The CV is dead, long live the CV !

Enseigner les recueil des données : explorer la variabilité biologique ... au chaud, dans une salle de cours

Estimating the Number of Contributors to Forensic DNA Mixtures: Does Maximum Likelihood Perform Better Than Maximum Allele Count?

Serotyping of Toxoplasma gondii: striking homogeneous pattern between symptomatic and asymptomatic infections within Europe and South America.

From W.S. Gosset`s pieces of card (1908) to R software : analysing Macdonell`s dataset of 3000 criminals

An agent-based model for predicting the prevalence of Trypanosoma cruzi I and II in their host and vector populations

A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry

SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis

Serotyping of Toxoplasma gondii in chronically infected pregnant women: predominance of type II in Europe and types I and III in Colombia (South America).

UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major

Serotyping of Toxoplasma gondii in chronically infected pregnant women : predominance of type II in Europe and types I and III in Colombia (South America)

Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

Online synonymous codon usage analyses with the ade4 and seqinR packages

Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

Life history traits and genome structure: aerobiosis and G+C content in bacteria

Forcing reversibility in the no strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

Polarisation of prokaryotic chromosomes

Asymmetric directional mutation pressures in bacteria

Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids

Genomic landscapes

Intra-strand biases in bacteriophage T4 genome

Physical mapping of an origin of bidirectional replication at the centre of the Borrelia burgdorferi linear chromosome

Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms