Veber Philippe

Haemolysis overestimates plasma oxidative stress biomarkers in free-ranging roe deer

Amandine Herrada, Pauline Vuarin, François Débias, Alexia Gache, Philippe Veber, Maryline Pellerin...

Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology . 298 : 111750

DOI: 10.1016/j.cbpa.2024.111750

2024

Article dans une revue

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Evaluation of Methods to Detect Shifts in Directional Selection at the Genome Scale

Louis Duchemin, Vincent Lanore, Philippe Veber, Bastien Boussau

Molecular Biology and Evolution . 40 ( 2 )

DOI: 10.1093/molbev/msac247

2023

Article dans une revue

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Neural Networks beyond explainability: Selective inference for sequence motifs

Antoine Villié, Philippe Veber, Yohann de Castro, Laurent Jacob

Transactions on Machine Learning Research Journal .

DOI: 10.48550/arXiv.2212.12542

2023

Article dans une revue

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Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads

Morgane Touzot, Tristan Lefebure, Thierry Lengagne, Jean Secondi, Adeline Dumet, Lara Konecny-Dupre...

Science of the Total Environment . 818 : 151734

DOI: 10.1016/j.scitotenv.2021.151734

2022

Article dans une revue

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Meta-transcriptomics reveals stress adaptation processes in microbial communities differing in exposure history

Floriane Larras, Elise Billoir, Stefan Lips, Stephan Schreiber, Philippe Veber, Marie Laure Delignette-Muller...

"Ecology and Evolution: New perspectives and societal challenges" SFE2-GfÖ-EEF joint meeting, International conference on ecological sciences .

2022

Acte de congrès

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Bayesian investigation of SARS-CoV-2-related mortality in France

Louis Duchemin, Philippe Veber, Bastien Boussau

Peer Community Journal . 2 ( e6 )

DOI: 10.1101/2020.06.09.20126862

2022

Article dans une revue

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CAARS: comparative assembly and annotation of RNA-Seq data

Carine Rey, Philippe Veber, Bastien Boussau, Marie Sémon

Bioinformatics . 35 ( 13 ) : 2199-2207

DOI: 10.1093/bioinformatics/bty903

2019

Article dans une revue

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Detecting adaptive convergent amino acid evolution

Carine Rey, Vincent Lanore, Philippe Veber, Laurent Guéguen, Nicolas Lartillot, Marie Sémon...

Philosophical Transactions of the Royal Society B: Biological Sciences . 374 ( 1777 ) : 1-11

DOI: 10.1098/rstb.2018.0234

2019

Article dans une revue

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MOSAIC : une plate-forme web pour l’analyse statistique des données d’écotoxicologie. Fiche Thématique N°13

Sandrine Charles, Virgile Baudrot, Philippe Veber

: 4 p.

2018

voir la publication

Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Ruiz, P. Veber

Environmental Science and Technology . 51 : 4038-4045

DOI: 10.1021/acs.est.6b05326

2017

Article dans une revue

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Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Marie Laure Delignette-Muller, P. Veber

Environmental Science and Technology . 51 : 8202-8203

DOI: 10.1021/acs.est.7b02548

2017

Article dans une revue

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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Cédric Chauve, Akbar A Rafiey, Adrian A Davin, Celine Scornavacca, Philippe Veber, Bastien Boussau...

DOI: 10.1101/127548

2017

Autre publication

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Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

Florence Carrouel, Stéphane Viennot, Julie Santamaria, Philippe Veber, Denis Bourgeois

Frontiers in Microbiology . 7 : 840 - 840

DOI: 10.3389/fmicb.2016.00840

2016

Article dans une revue

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RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Amandine Chatagnon, Philippe Veber, Valérie Morin, Justin Bedő,, Gérard Triqueneaux, Marie Sémon...

Nucleic Acids Research . 43 ( 10 ) : 4833--4854

DOI: 10.1093/nar/gkv370

2015

Article dans une revue

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Host plant specialization matters in the epidemiology of Wolbachia across phytophagous wasps (Hymenoptera: Torymidae)

Thomas Boivin, Hélène Henri, Fabrice Vavre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

8. International Wolbachia Conference . : np

2014

Poster

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Statistical handling of reproduction data for exposure-response modeling

Marie Laure Delignette-Muller, Christelle Lopes, Philippe Veber, Sandrine Charles

Environmental Science and Technology . 48 : 7544-51

DOI: 10.1021/es502009r

2014

Article dans une revue

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Epidemiology of asexuality induced by the endosymbiotic Wolbachia across phytophagous wasp species: host plant specialization matters.

Thomas Boivin, Hélène Henri, Fabrice Vavre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

Molecular Ecology Notes . 23 ( 9 ) : 2362-2375

DOI: 10.1111/mec.12737

2014

Article dans une revue

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BioNLP Shared Task - The Bacteria Track

Robert Bossy, Julien Jourde, Alain-Pierre Manine, Philippe Veber, Erick Alphonse, Maarten van de Guchte...

BMC Bioinformatics . 13 : np

DOI: 10.1186/1471-2105-13-S11-S3

2012

Article dans une revue

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BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming

Julien Jourde, Alain-Pierre Manine, Philippe Veber, Karen Fort, Robert Bossy, Erick Alphonse...

Proceedings of the BioNLP Shared Task 2011 ACL Workshop . 13 9781937284091 : 65-73

2011

Acte de congrès

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Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming

Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Philippe Veber...

Principles of Knowledge Representation and Reasoning .

2010

Acte de congrès

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Lagrangian approaches for a class of matching problems in computational biology

Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev

Computers & Mathematics with Applications . 55 ( Issue 5 (March 2008) ) : 1054-1067

DOI: 10.1016/j.camwa.2006.12.103

2008

Article dans une revue

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

BMC Bioinformatics . 9 : nc

DOI: 10.1186/1471-2105-9-228

2008

Article dans une revue

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

2007

Rapport

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Optimiser un plan d'expérience à partir de modèles qualitatifs?

Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne

Biofutur . 275 : 27-31

2007

Article dans une revue

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Détection de domaines dans des séquences génomiques : un problème de couverture optimale

Philippe Veber, Sébastien Tempel, Rumen Andonov, Dominique Lavenier, Jacques Nicolas

FRANCORO V/ROADEF 2007 .

2007

Acte de congrès

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Decision Diagrams for Qualitative Biological Models

Michel Le Borgne, Philippe Veber

: 17

2007

Rapport

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

: 14

2007

Rapport

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Qualitative response of interaction networks: application to the validation of biological models

Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne

6th International Congress on Industrial and Applied Mathematics. ICIAM 07 . : nc

2007

Acte de congrès

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

Journal of Biological Physics and Chemistry . 7 : 37-43

2007

Article dans une revue

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Path-equivalent developments in acyclic weighted automata

Mathieu Giraud, Philippe Veber, Dominique Lavenier

International Journal of Foundations of Computer Science . 18 ( 4 ) : 799-812

DOI: 10.1142/S012905410700498X

2007

Article dans une revue

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Publications

Haemolysis overestimates plasma oxidative stress biomarkers in free-ranging roe deer

Evaluation of Methods to Detect Shifts in Directional Selection at the Genome Scale

Neural Networks beyond explainability: Selective inference for sequence motifs

Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads

Meta-transcriptomics reveals stress adaptation processes in microbial communities differing in exposure history

Bayesian investigation of SARS-CoV-2-related mortality in France

CAARS: comparative assembly and annotation of RNA-Seq data

Detecting adaptive convergent amino acid evolution

MOSAIC : une plate-forme web pour l’analyse statistique des données d’écotoxicologie. Fiche Thématique N°13

Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

Response to Comment on "Robust Fit of Toxicokinetic-Toxicodynamic Models Using Prior Knowledge Contained in the Design of Survival Toxicity Tests

MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Quantitative Molecular Detection of 19 Major Pathogens in the Interdental Biofilm of Periodontally Healthy Young Adults

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Host plant specialization matters in the epidemiology of Wolbachia across phytophagous wasps (Hymenoptera: Torymidae)

Statistical handling of reproduction data for exposure-response modeling

Epidemiology of asexuality induced by the endosymbiotic Wolbachia across phytophagous wasp species: host plant specialization matters.

BioNLP Shared Task - The Bacteria Track

BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming

Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming

Lagrangian approaches for a class of matching problems in computational biology

Inferring the role of transcription factors in regulatory networks

Inferring the role of transcription factors in regulatory networks

Optimiser un plan d'expérience à partir de modèles qualitatifs?

Détection de domaines dans des séquences génomiques : un problème de couverture optimale

Decision Diagrams for Qualitative Biological Models

Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Qualitative response of interaction networks: application to the validation of biological models

Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Path-equivalent developments in acyclic weighted automata