Siberchicot Aurélie

🧰 Modelling & Scientific Analysis Tools

Multivariate, Spatial & Phylogenetic Analysis

• ade4 (Multivariate data analysis and graphical display): CRAN -- GitHub -- book -- shiny app
• ade4TkGUI (A Tcl/Tk GUI for some basic functions in the ade4 package): CRAN -- GitHub
• adegraphics (Graphical functionalities for the representation of multivariate data): CRAN -- GitHub -- article -- talk
• adephylo (Exploratory Analyses for the Phylogenetic Comparative Method): CRAN --  GitHub
• adespatial (Multivariate Multiscale Spatial Analysis): CRAN -- GitHub
• Interatrix (Compute Chi-Square Measures with Corrections): CRAN -- article
• Mondrian (A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events): CRAN -- GitHub -- shiny app

Non-Linear Statistics & Distributions

• aods3 (Analysis of Overdispersed Data using S3 Methods): CRAN -- GitHub
• fitdistrplus (Help to Fit of a Parametric Distribution to Non-Censored or Censored Data): CRAN -- GitHub -- web
• nlsMicrobio (Nonlinear Regression in Predictive Microbiology): CRAN -- GitHub
• nlstools (Tools for Nonlinear Regression Analysis): CRAN -- GitHub

🧬 Bioinformatics & Functional Genomics

• DRomics (Dose Response for Omics): CRAN -- GitHub -- web -- shiny app 1 -- IFB cloud appliance 1 -- shiny app 2 -- IFB cloud appliance 2 -- poster -- article1 -- article2
• kissDE (Retrieves Condition-Specific Variants in RNA-Seq Data): Bioconductor -- GitHub
• LDcorSV (Linkage Disequilibrium Corrected by the Structure and the Relatedness): CRAN -- article
• LifemapR (Data Visualisation on 'Lifemap' Tree): CRAN -- GitHub
• MareyMap (Estimation of Meiotic Recombination Rates Using Marey Maps): CRAN -- GitHub -- web -- shiny app -- article
• phylter (Detect and Remove Outliers in Phylogenomics Datasets): CRAN -- GitHub
• ssd4mosaic (Web Application for the SSD Module of the MOSAIC Platform): CRAN -- GitLab

🧪 Applications in Ecology & Biology

• CINID (Curculionidae INstar IDentification): CRAN -- article
• OnAge (Test of Between-Group Differences in the Onset of Senescence): CRAN -- web
• WindiApp (Assessment of the risk of wind dispersal of Culicoides): shiny app

🧭 Research Projects (software contribution)

• Analysis of data from the International Tiger Studbook and from the International and North American Regional Studbooks for Ruffed Lemurs -- article -- article
• AGEX (ANR-15-CE32-0002-01, 2015-2019)  -- article
• Potenchêne (GIP-ECOFOR, 2014-2018) -- article
• CoCoReCo (JC09-470585, 2009-2012) -- article

🌐 Online Platforms & Resources

• GitLab and GitHub organizations of LBBE
• shiny serveur: http://lbbe-shiny.univ-lyon1.fr
• Website of Statistics in Biology: http://pbil.univ-lyon1.fr/R/

Professional Networks & Conferences

• Rencontres R (Steering Committee, since 2023)
• 3e Journées Nationales du Réseau de la Recherche Reproductible (Conference, Organization Committee, Lyon, 2025)
• 7e Rencontres R (Conference, Programm Committee, Rennes, 2018)
• R pour le calcul (Action Nationale de Formation CNRS, Organization Committee, Aussois, 2015)
• 2e Rencontres R (Conference, Organization Committee, Lyon, 2013) -- article

Trainings & Courses

• UE  IT Bases, M1 Biodiversité, Écologie et Évolution, University Lyon 1, since 2022
• UE Visualization of Biological Data, M2 Bio-informatique, University Lyon 1, since 2019
• Reproducible Research in Computational Ecology, FRB-Cesab et Gdr Ecostat, since 2022
• The basics of the R language, University Savoie Mont Blanc, from 2022 to 2024
• Programming with R: from the simplest to the most complex, Groupe Lyon Calcul, 2018
• Build your own R package, ANF CNRS R pour le calcul, 2015

Competition Jury

• Concours externe CNRS (2025) - BAP E- IR - Expert·e en calcul scientifique
• Concours externe ENS (2021) - BAP A- IE - Ingénieur·e biologiste en traitement des données
• Concours externe INRA (2019) - Experte - BAP E - AI - Assistant·e statisticien·ne
• Concours externe INRA (2019) - BAP E - IE - Administrateur·trice des systèmes d’information
• Concours externe CNRS (2017) - Experte - BAP E - IE - Ingénieur·e en ingénierie logicielle - 2 postes

Student Supervision

• Cassandra Bompard, stage M2, Développement d'un package R de visualisation (2023)
• Eliane Schermer, stage M2 et thèse, Modélisation en écologie (2015-2019)
• Luka Matsuda, stage L3, Bioinformatique, Statistique et Modélisation (2018)
• Adrien Bessy, stage M2, Bioinformatique (2015)