GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 421 to 450 publications on 1251 in total

Amortized Õ(\textbarV)-Delay Algorithm for Listing Chordless Cycles in Undirected Graphs

R. Ferreira, R. Grossi, R. Rizzi, Gustavo Sacomoto, Marie-France Sagot

Lecture Notes in Computer Science . 8737 : 418-429

Journal article

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On the Enumeration of Minimal Dominating Sets and Related Notions

Mamadou Moustapha Kanté, Vincent Limouzy, Arnaud Mary, Lhouari Nourine

SIAM Journal on Discrete Mathematics . 28 ( 4 ) : 1916 - 1929

DOI: 10.1137/120862612

Journal article

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Diet of ancient Egyptians inferred from stable isotope systematics

Alexandra Touzeau, Romain Amiot, Janne Blichert-Toft, Jean-Pierre Flandrois, François Fourel, Vincent Grossi...

Journal of Archaeological Science . 46 : 114-124

DOI: 10.1016/j.jas.2014.03.005

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MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis.

Jean-Pierre Flandrois, Gérard Lina, Oana Dumitrescu

BMC Bioinformatics . 15 ( 1 ) : 107

DOI: 10.1186/1471-2105-15-107

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Mycobacterium Species Related to M. leprae and M. lepromatosis from Cows with Bovine Nodular Thelitis

D. Pin, V. Guerin-Faublee, V. Garreau, F. Breysse, Oana Dumitrescu, Jean-Pierre Flandrois...

Emerging Infectious Diseases . 20 : 2111-4

DOI: 10.3201/eid2012.140184

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Reference-free detection of isolated SNPs

Raluca Uricaru, Guillaume Rizk, Vincent Lacroix, Elsa Quillery, Olivier Plantard, Rayan Chikhi...

Nucleic Acids Research . 43 ( 2 ) : e11

DOI: 10.1093/nar/gku1187

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Promiscuous Nickel Import in Human Pathogens: Structure, Thermodynamics, and Evolution of Extracytoplasmic Nickel-Binding Proteins

Hugo Lebrette, Céline Brochier-Armanet, Barbara Zambelli, Hilde de Reuse, Elise Borezée-Durant, Stéfano Ciurli...

Structure . 22 ( 10 ) : 1421-1432

DOI: 10.1016/j.str.2014.07.012

Journal article

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Protein SYCP2 Is an Ancient Component of the Metazoan Synaptonemal Complex

J. Fraune, M. Alsheimer, J. Redolfi, Céline Brochier-Armanet, R. Benavente

Cytogenetic and genome research . 144 : 299-305

DOI: 10.1159/000381080

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Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family

R. Zallot, Céline Brochier-Armanet, K. W. Gaston, F. Forouhar, P. A. Limbach, J. F. Hunt...

ACS Chemical Biology . 9 ( 8 ) : 1812-1825

DOI: 10.1021/cb500278k

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Ail and PagC-Related Proteins in the Entomopathogenic Bacteria of Photorhabdus Genus

Annabelle Mouammine, Anne Lanois, Sylvie Pages, Bénédicte Lafay, Virginie Molle, Marc Canova...

PLoS ONE . 9 ( 10 ) : e110060

DOI: 10.1371/journal.pone.0110060

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Contribution of graphs to the analysis of bacterial genome architecture

Olivier Poirion, Bénédicte Lafay

BioNetVisA workshop, ECCB'14, the 13th European Conference on Computational Biology .

Conference paper

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Structuration of the bacterial replicon space

Olivier Poirion, Bénédicte Lafay

ECCB'14 . CD

Conference paper

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Chromosome formation in bacteria

Olivier Poirion, Bénédicte Lafay

EMBO Conference "Microbiology after the genomics revolution : Genomes 2014" .

Conference paper

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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

Johan Panek, Hicham El Alaoui, Anne Mone, Serge Urbach, Edith Demettre, Catherine Texier...

PLoS ONE . 9 ( 6 ) : e100791

DOI: 10.1371/journal.pone.0100791

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Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.

Nicolas Parisot, Adrian Pelin, Cyrielle Gasc, Valérie Polonais, Abdel Belkorchia, Johan Panek...

Genome Biology and Evolution . 6 ( 9 ) : 2289-300

DOI: 10.1093/gbe/evu178

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Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems

E Peyretaillade, D Boucher, N Parisot, C Gasc, R Butler, J-F Pombert...

Heredity . : 25182222

DOI: 10.1038/hdy.2014.78

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An angiosperm-wide analysis of the gynodioecy-dioecy pathway.

Mathilde Dufaÿ, P. Champelovier, J Käfer, Jean-Pierre Henry, Sylvain Mousset, Gabriel A.B. Marais

Annals of Botany . 114 : 539-548

DOI: 10.1093/aob/mcu134

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Comparative population genomics in animals uncovers the determinants of genetic diversity

Jonathan Romiguier, P Gayral, M Ballenghien, Arnaud Bernard, V Cahais, A. Chenuil...

Nature . 515 ( 7526 ) : 261-263

DOI: 10.1038/nature13685

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Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes

Nc. Rochette, Céline Brochier-Armanet, M. Gouy

Molecular Biology and Evolution . 31 ( 4 ) : 832-45

DOI: 10.1093/molbev/mst272

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Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

Pierre P. Gladieux, Jeanne Ropars, Helene Badouin, Antoine Branca, Gabriela G. Aguileta, Damien M. de Vienne...

Molecular Ecology . 23 ( 4 ) : 753-773

DOI: 10.1111/mec.12631

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Navigating in a Sea of Repeats in RNA-seq without Drowning

Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

WABI 2014 - 14th International Workshop on Algorithms in Bioinformatics . 8701 : 82-96

DOI: 10.1007/978-3-662-44753-6_7

Conference paper

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Efficiently listing bounded length st-paths

Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot

Twenty-Fifth International Workshop on Combinatorial Algorithms (IWOCA 2014) . : in press

Conference paper

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Rime: Repeat identification

Maria Federico, Pierre Peterlongo, Nadia Pisanti, Marie-France Sagot

Discrete Applied Mathematics . 163 ( 3 ) : 275–286

DOI: 10.1016/j.dam.2013.02.016

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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne E. Birmelé, Michele Borassi...

Bioinformatics . 30 ( 1 ) : 61-70

DOI: 10.1093/bioinformatics/btt597

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Optimization of the reactional medium and a food impact study for a colorimetric in situ Salmonella spp. detection method

L. Morand, D. Michel, Jean-Pierre Flandrois, T. Junillon, D. Mosticon, B. Mallen...

International Journal of Food Microbiology . 181 : 48-52

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Enhanced tetrazolium violet reduction of Salmonella spp. by magnesium addition to the culture media

T. Junillon, L. Morand, Jean-Pierre Flandrois

Food Microbiology . 42 : 132-135

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Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Hemalatha Golaconda Ramulu, Mathieu Groussin, Emmanuel Talla, Rémi Planel, Vincent Daubin, Céline Brochier-Armanet

Molecular Phylogenetics and Evolution . 75 : 103 - 117

DOI: 10.1016/j.ympev.2014.02.013

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