GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 841 to 870 publications on 1197 in total

Natural history of the ERVWE1 endogenous retroviral locus

B. Bonnaud, J. Beliaeff, O. Bouton, G. Oriol, L. Duret, Frédéric Mallet

Retrovirology . 2 : 1-7

Journal article

see the publication

Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance

M. Sémon, Dominique Mouchiroud, L. Duret

Human Molecular Genetics . 14 : 421-427

Journal article

see the publication

HOPPSIGEN: a database of human and mouse processed pseudogenes.

A. Khelifi, L. Duret, Dominique Mouchiroud

Nucleic Acids Research . 33 ( Database issue ) : D59-66

DOI: 10.1093/nar/gki084

Journal article

see the publication

Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array

Pierre Peterlongo, Nadia Pisanti, Frederique Boyer, Marie-France Sagot

String Processing and Information Retrieval, 12th International Conference, SPIRE 2005 . 3772 : 179-190

DOI: 10.1007/11575832

Conference paper

see the publication

Reaction Motifs in Metabolic Networks

Vincent Lacroix, Cristina Gomes Fernandes, Marie-France Sagot

: 14

Report

see the publication

Perfect Sorting by Reversals

Marie-France Sagot, Eric Tannier

: 13

Report

see the publication

A Comparative Study of Bases for Motif Inference

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

String Algorithmics . : 195-225

Conference paper

see the publication

A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories

Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot

Proceedings of the 6th International Conference on Music Information Retrieval (ISMIR 2005) . : 167-174

Conference paper

see the publication

Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators

A. Aouacheria, F. Brunet, Manolo Gouy

Molecular Biology and Evolution . 22 ( 12 ) : 2395-2416

DOI: 10.1093/molbev/msi234

Journal article

see the publication

[From prevalence to predictive values: considerations on the antimicrobial susceptibility testing dealing with change of susceptibility rates].

Jean-Pierre Flandrois, B Lamy, G. Carret, M Delignette-Muller

Annales de Biologie Clinique . 63 ( 5 ) : 493-502

Journal article

see the publication

A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model

G. Devulder, M. Perouse de Montclos, Jean-Pierre Flandrois

International Journal of Systematic and Evolutionary Microbiology . 55 : 293-302

Journal article

see the publication

[Luca: the last universal common ancestor]

Patrick Forterre, Simonetta Gribaldo, Céline Brochier

Médecine/Sciences . 21 ( 10 ) : 860-5

Journal article

see the publication

Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa and Protostomia

Herve Philippe, Nicolas Lartillot, Henner Brinkmann

Molecular Biology and Evolution . 22 ( 5 ) : 1246-1253

DOI: 10.1093/molbev/msi111

Journal article

see the publication

Phylogenomics

Hervé Philippe, Frédéric Delsuc, Henner Brinkmann, Nicolas Lartillot

Annual Review of Ecology, Evolution, and Systematics . 36 : 541-562

Journal article

see the publication

Evolutionary origins of genomic repertoires in bacteria

E. Lerat, Vincent Daubin, H. Ochman, N.A. Moran

PLoS Biology . 3 : 0807-0814

Journal article

see the publication

Recognizing the pseudogenes in bacterial genomes

E. Lerat, H. Ochman

Nucleic Acids Research . 33 : 3125-3132

Journal article

see the publication

A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison

Julien Allali, Marie-France Sagot

String Processing and Information Retrieval 2005 (SPIRE 2005) . 3772 : 348--359

DOI: 10.1007/11575832_39

Conference paper

see the publication

Polymorphix: a sequence polymorphism database

E. Bazin, L. Duret, Simon Penel, N. Galtier

Nucleic Acids Research . 33 : 481-484

Journal article

see the publication

Les trésors cachés du génome humain

L. Duret

Pour la science . -- : 16-21

Journal article

see the publication

Bioinformatics with a French accent

L.D. Hurst, L. Duret

Genome Biology . 6 : 349.1-349.3

Journal article

see the publication

Natural history of the ERVWE 1 endogenous retroviral locus.

Bertrand Bonnaud, Jean Beliaeff, Olivier Bouton, Guy Oriol, Laurent Duret, François Mallet

Retrovirology . 2:57 : 1 - 7

DOI: 10.1186/1742-4692-2-57

Journal article

see the publication

Reaction motifs in metabolic networks

Vincent Lacroix, C.G. Fernandes, M.-F. Sagot

International Workshop on Algorithms in Bioinformatics (WABI) . 3692 : 178-191

DOI: 10.1007/11557067_15

Conference paper

see the publication

Perfect sorting by reversals

M.-F. Sagot, Eric Tannier

International Computing and Combinatorics Conference . 3595 : 42-51

DOI: 10.1007/11533719_7

Conference paper

see the publication

A new distance for high level RNA secondary structure comparison

Julien Allali, Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 2 : 3--14

Journal article

see the publication

Bases of motifs for generating repeated patterns with wild cards

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 2 : 40-50

DOI: 10.1109/TCBB.2005.5

Journal article

see the publication

Online synonymous codon usage analyses with the ade4 and seqinR packages

D. Charif, J. Thioulouse, J.R. Lobry, G. Perrière

Bioinformatics . 21 : 545-547

Journal article

see the publication

MADE4: an R package for multivariate analysis of gene expression data

A.C. Culhane, J. Thioulouse, G. Perrière, D.G. Higgins

Bioinformatics . 21 : 2789-2790

Journal article

see the publication

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

A. Calteau, Manolo Gouy, G. Perrière

Journal of Molecular Evolution . 60 ( 5 ) : 557-65

DOI: 10.1007/s00239-004-0094-8

Journal article

see the publication

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

F. Baty, M.P. Bihl, G. Perrière, A.C. Culhane, M.H. Brutsche

BMC Bioinformatics . 6 : 1-12

Journal article

see the publication

Type I Polyketide Synthases May Have Evolved Through Horizontal Gene Transfer

Aurélien Ginolhac, Cyrille Jarrin, Patrick Robe, Guy Perrière, Timothy M. Vogel, Pascal Simonet...

Journal of Molecular Evolution . ( 60 ) : 716-725

DOI: 10.1007/s00239-004-0161-1

Journal article

see the publication