GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 811 to 840 publications on 1197 in total

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.

Jean-Marc Aury, Olivier Jaillon, L. Duret, Benjamin Noel, Claire Jubin, Betina M Porcel...

Nature . 444 ( 7116 ) : 171-8

DOI: 10.1038/nature05230

Journal article

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The GC Content of Primates and Rodents Genomes Is Not at Equilibrium : a Reply to Antezana

L. Duret

Journal of Molecular Evolution . -- : 803-806

Journal article

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The Xist RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene

L. Duret, C. Chureau, S. Samain, J. Weissenbach, P. Avner

Science . 312 : 1653-1655

Journal article

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Evolutionary origin and maintenance of coexpressed gene clusters in mammals.

M. Sémon, L. Duret

Molecular Biology and Evolution . 23 : 1715-1723

Journal article

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RISOTTO: Fast extraction of motifs with mismatches

N. Pisanti, A. Carvalho, L. Marsan, M.-F. Sagot

Latin American Symposium on Theoretical Informatics . 3887 : 757-768

DOI: 10.1007/11682462_69

Conference paper

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The Gapped-Factor Tree

Pierre Peterlongo, Julien Allali, Marie-France Sagot

Prague Stringology Conference 2006 . : 182--196

Conference paper

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An efficient algorithm for the identification of structured motifs in DNA promoter sequences

A.M. Carvalho, A.T. Freitas, A.L. Oliveira, M.-F. Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 3 : 126-140

Journal article

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Lossless Filter for Long Multiple Repetitions with Edit Distance

Pierre Peterlongo, Nadia Pisanti, Alair Peirera Do Lago, Marie-France Sagot

Report

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Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules.

Elodie de Laplanche, Karine Gouget, Guilhem Cléris, Franck Dragounoff, Jocelyne Demont, Anne Morales...

AJP Renal Physiology . 291 ( 4 ) : F750-60

DOI: 10.1152/ajprenal.00022.2006

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HoSeql : automated homologous sequence identification in gene family databases

Anne-Muriel Arigon Chifolleau, G. Perrière, Manolo Gouy

Bioinformatics . 22 ( 14 ) : 1786-1787

DOI: 10.1093/bioinformatics/btl179

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Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation

T. Lefébure, C.J. Douady, Manolo Gouy, J. Gibert

Molecular Phylogenetics and Evolution . 40 ( 2 ) : 435-447

DOI: 10.1016/j.ympev.2006.03.014

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Use of PCR-Restriction Enzyme Pattern Analysis and Sequencing Database for hsp65 Gene-Based Identification of Nocardia Species

V. Rodriguez-Nava, A. Couble, G. Devulder, Jean-Pierre Flandrois, P. Boiron, F. Laurent

Journal of Clinical Microbiology . 44 ( 2 ) : 536-546

DOI: 10.1128/JCM.44.2.536-546.2006

Journal article

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16S rRNA sequencing in routine bacterial identification : A 30-month experiment

S. Mignard, Jean-Pierre Flandrois

Journal of Microbiological Methods . 67 : 574-581

Journal article

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Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene

J. Delmas, F. Breysse, G. Devulder, Jean-Pierre Flandrois, M. Chomarat

Diagnostic Microbiology and Infectious Disease . 55 : 263-268

Journal article

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Metabolic network visualization using constraint planar graph drawing Algorithm

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Metabolic network visualization using constraint planar graph drawing Algorithm . : 489 - 496

Conference paper

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Metabolic network visualization using constraint planar graph drawing algorithm

Romain Bourqui, D. Auber, Vincent Lacroix, F. Jourdan

incollection . -- : 489-496

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Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques . : électronique

Conference paper

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The origin and evolution of Archaea: a state of the art

Simonetta Gribaldo, Céline Brochier-Armanet

Philos Trans R Soc Lond B Biol Sci . 361 : 1007-22

Journal article

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A Bayesian Compound Stochastic Process for Modeling Nonstationary and Nonhomogeneous Sequence Evolution

Samuel Blanquart, Nicolas Lartillot

Molecular Biology and Evolution . 23 ( 11 ) : 2058-2071

DOI: 10.1093/molbev/msl091

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Assessing Site-Interdependent Phylogenetic Models of Sequence Evolution

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Molecular Biology and Evolution . 23 ( 9 ) : 1762-1775

DOI: 10.1093/molbev/msl041

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Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

J.R. Lobry, A. Necşulea

Gene . 385 : 128-136

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Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in Leishmania major

A. Necşulea, J.R. Lobry

Gene . 385 : 28-40

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Trypanosoma cruzi: sequence analysis of the variable region of kinetoplast minicircles

Jenny Telleria, Bénédicte Lafay, Myrna Virreira, Christian Barnabé, Michel Tibayrenc, Michal Svoboda

Experimental Parasitology . 114 ( 4 ) : 279-88

DOI: 10.1016/j.exppara.2006.04.005

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Recent Origin and Cultural Reversion of a Hunter–Gatherer Group

Hiroki Oota, Brigitte Pakendorf, Günter Weiss, Arndt von Haeseler, Surin Pookajorn, Wannapa Settheetham-Ishida...

PLoS Biology . 3 ( 3 ) : e71

DOI: 10.1371/journal.pbio.0030071

Journal article

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Mitochondrial DNA and Human Evolution

Brigitte Pakendorf, Mark Stoneking

Annual Review of Genomics and Human Genetics . 6 ( 1 ) : 165-183

Journal article

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Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard, L. Duret, Simon Penel, Manolo Gouy, F. Rechenmann, G. Perrière

Bioinformatics . 21 ( 11 ) : 2596-603

DOI: 10.1093/bioinformatics/bti325

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Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

P. Kersey, L. Bower, L. Morris, A. Horne, R. Petryszak, C. Kanz...

Nucleic Acids Research . 33 ( Database issue ) : D297-302

DOI: 10.1093/nar/gki039

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Homology-dependent methylation in primate repetitive DNA.

J. Meunier, A. Khelifi, V. Navratil, L. Duret

Proceedings of the National Academy of Sciences of the United States of America . 102 ( 15 ) : 5471-6

DOI: 10.1073/pnas.0408986102

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