GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 751 to 780 publications on 1251 in total

Uniformization for Sampling Realizations of Markov Processes: Applications to Bayesian Implementations of Codon Substitution Models

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Bioinformatics . 24 ( 1 ) : 56-62

DOI: 10.1093/bioinformatics/btm532

Journal article

see the publication

Etude des patrons d`évolution asymétrique dans les séquences d`ADN

A. Necşulea

incollection . -- : 476-482

Journal article

see the publication

Losing helena: The extinction of a drosophila line-like element

Rita Rebollo, Emmanuelle Lerat, Liliana Lopez Kleine, Christian Biémont, Cristina Vieira

BMC Genomics . 9 : 1-11

DOI: 10.1186/1471-2164-9-149

Journal article

see the publication

Sequence variability and phylogenetic analyses of the Complement Regulatory Protein expressed by the trypomastigote stage of Trypanosoma cruzi identify a monophyletic group of CRP-like proteins

Françoise Mathieu-Daudé, Bénédicte Lafay, Olivia Touzet, Marie-France Bosseno, Favio Parrado, Ana Maria Rojas...

Xth European Multicolloquium of Parasitology .

Conference paper

see the publication

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

A. Studer, Simon Penel, L. Duret, M. Robinson-Rechavi

Genome Research . 18 : 1393-1402

Journal article

see the publication

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

L. Duret, Jean Cohen, Claire Jubin, Philippe Dessen, Jean-François Goût, Sylvain Mousset...

Genome Research . 18 ( 4 ) : 585-96

DOI: 10.1101/gr.074534.107

Journal article

see the publication

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

L. Duret, P.F. Arndt

PLoS Genetics . 4 : 1-19

Journal article

see the publication

Neutral Theory: The Null Hypothesis of Molecular Evolution

L. Duret

Nature Education . 1 ( 1 ) : 803-806

Journal article

see the publication

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline

L. Duret, J. Cohen, C. Jubin, P. Dessen, J.-F. Gout, Sylvain Mousset...

Genome Research . 18 : 585-596

DOI: 10.1101/gr.074534.107

Journal article

see the publication

An introduction to metabolic networks and their structural analysis.

Vincent Lacroix, Ludovic Cottret, Patricia Thebault, Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 5 ( 4 ) : 594-617

DOI: 10.1109/TCBB.2008.79

Journal article

see the publication

Evolution des organismes bactériens

G. Beslon, Federica Calevro, H. Charles, J.M. Fayard, C. Knibbe, S. Genieys...

Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" . : 1-1

Conference paper

see the publication

Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum

H. Charles, Federica Calevro, Stefano Colella, J.M. Fayard, G. Febvay, Yvan Rahbé...

Séminaire INRA AgroBI . : 1-1

Conference paper

see the publication

A multiple layer model to compare RNA secondary structures

Julien Allali, Marie-France Sagot

Software: Practice and Experience . 38 ( 8 ) : 775-792

DOI: 10.1002/spe.846

Journal article

see the publication

Indexing gapped-factors using a tree

Pierre Peterlongo, Julien Allali, Marie-France Sagot

International Journal of Foundations of Computer Science . 19 ( 1 ) : 71-87

DOI: 10.1142/S0129054108005541

Journal article

see the publication

Lossless filter for multiple repetitions with Hamming distance

Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Alair Pereira Do Lago, Marie-France Sagot

Journal of Discrete Algorithms . 6 ( 3 ) : 497-509

DOI: 10.1016/j.jda.2007.03.003

Journal article

see the publication

Precise detection of rearrangement breakpoints in mammalian chromosomes

Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot

BMC Bioinformatics . 9 ( 1 ) : 286

DOI: 10.1186/1471-2105-9-286

Journal article

see the publication

Development of the Acyrthosiphon pisum Cyc database (ApsCyc): from genome sequence to metabolic network analyses

A. Vellozo, Stefano Colella, L. Cottret, G. Febvay, Federica Calevro, Yvan Rahbé...

Integrative Post-Genomics - IPG'08 . : 1-1

Conference paper

see the publication

Annotation of metabolism genes: towads the implementation of an Acyrthosiphon pisum Cyc database (ApsCyc) to perform metabolic network analyses

Stefano Colella, A. Vellozo, L. Cottret, G. Febvay, Federica Calevro, Yvan Rahbé...

4th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 1" . : 1-1

Conference paper

see the publication

Démasquage des gènes spécifiques d'une espèce génomique du complexeAgrobacterium tumefaciens par AFLP et multicapteur à ADN

Perrine Portier, Denis Costechareyre, Daniel Muller, David Chapulliot, Christine Oger, Guy Perrière...

7. Colloque national du Bureau des Ressources Génétiques . 7

Conference paper

see the publication

Automatic Identification of Large Collections of Protein-Coding or rRNA Sequences

Anne-Muriel Arigon Chifolleau, Guy Perrière, Manolo Gouy

Biochimie . 90 ( 4 ) : 609-614

DOI: 10.1016/j.biochi.2007.08.006

Journal article

see the publication

Bioinformatics in the complete genome sequence era

G. Perrière

Biochimie . 90 : 553-554

Journal article

see the publication

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Bastien Boussau, Laurent Guéguen, Manolo Gouy

BMC Evolutionary Biology . 8 : 272-272

DOI: 10.1186/1471-2148-8-272

Journal article

see the publication

A seven-gene multilocus genus-wide approach to the phylogeny of mycobacteria using supertrees

S. Mignard, Jean-Pierre Flandrois

International Journal of Systematic and Evolutionary Microbiology . 58(part 6) : 1432-1441

Journal article

see the publication

Exact Transcriptome Reconstruction from Short Sequence Reads

Vincent Lacroix, M. Sammeth, R. Guigo, A. Bergeron

International Workshop on Algorithms in Bioinformatics (WABI) . 5251 : 50-63

DOI: 10.1007/978-3-540-87361-7_5

Conference paper

see the publication

Identification de motifs dans les réseaux métaboliques : définitions algorithmes et application au métabolisme d’Escherichia coli

Vincent Lacroix

Edilivre . 978-2-35607-642-7

Book

see the publication

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

Céline Brochier-Armanet, Bastien Boussau, Simonetta Gribaldo, Patrick Forterre

Nature Reviews Microbiology . 6 ( 3 ) : 245-252

DOI: 10.1038/nrmicro1852

Journal article

see the publication

A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya.

Céline Brochier-Armanet, Simonetta Gribaldo, Patrick Forterre

Biol Direct . 3 : 54

DOI: 10.1186/1745-6150-3-54

Journal article

see the publication

Les Archaea : évolution et diversité du troisième domaine du vivant

Simonetta Gribaldo, Patrick Forterre, Céline Brochier-Armanet

Bulletin - Société Française de Microbiologie . 23 ( 3 ) : 137-145

Journal article

see the publication

Metagenome Annotation Using a Distributed Grid of Undergraduate Students

P. Hingamp, Céline Brochier-Armanet, E. Talla, D. Gautheret, D. Thieffry, C. Herrmann

PLoS Biology . 6 : 239-241

Journal article

see the publication

Full molecular characterization of a simian immunodeficiency virus, SIVwrcpbt from Temminck's red colobus (Piliocolobus badius temminckii) from Abuko Nature Reserve, The Gambia

Sabrina Locatelli, Bénédicte Lafay, Florian Liegeois, Nelson Ting, Eric Delaporte, Martine Peeters

Virology . 376 ( 1 ) : 90-100

DOI: 10.1016/j.virol.2008.01.049

Journal article

see the publication