GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 691 to 720 publications on 1198 in total

Annotation of metabolism genes : towads the implementation of an Acyrthosiphon pisum Cyc database (ApsCyc) to perform metabolic network analyses

Stefano Colella, Augusto Vellozo, L. Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé...

4. Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 1" .

Poster

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Modes and Cuts in Metabolic Networks:Complexity and Algorithms

Vicente Acuna, F. Chierichetti, Vincent Lacroix, A. Marchetti-Spaccamela, M.-F. Sagot, L. Stougie

BioSystems . 95 - n°1 : 51-60

Journal article

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Precise detection of rearrangement breakpoints in mammalian chromosomes

Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot

: 26

Report

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Transcriptomique

Jean-François Boulicaut, Federica Calevro, H. Charles, J.M. Fayard, G. Febvay, Olivier Gandrillon...

Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" . : 1-1

Conference paper

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Efficient representation and P-value computation for high-order Markov motifs

P. Soares da Fonseca, Christian Gautier, K.S Guimarães, M.-F. Sagot

Bioinformatics . 24 : i160-i166

Journal article

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Polymorphism of the Staphylococcus aureus Panton-Valentine LeukocidinGenes and Its Possible Link with the Fitness of Community-Associated Methicillin-Resistant S. aureus

O. Dumitrescu, A. Tristan, H. Meugnier, M. Bes, Manolo Gouy, J. Etienne...

Journal of Infectious Diseases . 198 ( 5 ) : 792-794

DOI: 10.1086/590914

Journal article

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Identification de motifs dans les réseaux métaboliques

Vincent Lacroix

incollection . -- : D1-D5

Journal article

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Acquisition of a bacterial RumA-type tRNA(uracil-54 C5)methyltransferase by Archaea through an ancient horizontal gene transfer

J. Urbonavicius, S. Auxilien, H. Walbott, K. Trachana, B. Golinelli-Pimpaneau, Céline Brochier-Armanet...

Molecular Microbiology . 67 : 323-335

Journal article

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Giant viruses giant chimeras: The multiple evolutionary histories of Mimivirus genes

D. Moreira, Céline Brochier-Armanet

BMC Evolutionary Biology . 8 : 1-7

Journal article

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Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.

Jaunius Urbonavicius, Sylvie Auxilien, Hélène Walbott, Kalliopi Trachana, Béatrice Golinelli-Pimpaneau, Céline Brochier-Armanet...

Molecular Microbiology . 67 ( 2 ) : 323-35

DOI: 10.1111/j.1365-2958.2007.06047.x

Journal article

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Exploring the FL-160-CRP gene family through sequence variability of the complement regulatory protein (CRP) expressed by the trypomastigote stage of Trypanosoma cruzi.

Françoise Mathieu-Daudé, Bénédicte Lafay, Olivia Touzet, Joël Lelièvre, Favio Parrado, Marie-France Bosseno...

Infection, Genetics and Evolution . 8 ( 3 ) : 258-66

DOI: 10.1016/j.meegid.2007.12.010

Journal article

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Quantitative predictions for DNA two-dimensional display according to size and nucleotide sequence composition

Jean-François Mercier, Christine Kingsburry, Gary W. Slater, Bénédicte Lafay

Electrophoresis . 29 ( 6 ) : 1264 - 1272

DOI: 10.1002/elps.200700407

Journal article

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Phylogenetic Mixture Models for Proteins

Quang Le Si, Nicolas Lartillot, Olivier Gascuel

Philosophical Transactions of the Royal Society B: Biological Sciences . 363 : 3965-3976

DOI: 10.1098/rstb.2008.0180

Journal article

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Bayesian computation for statistical models with intractable normalizing constants

Yves Atchade, Nicolas Lartillot, Christian Robert

Preprint

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Improvement of Molecular Phylogenetic Inference and the Phylogeny of Bilateria

Nicolas Lartillot, Herve Philippe

Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990) . 363 ( 1496 ) : 1463-1472

DOI: 10.1098/rstb.2007.2236

Journal article

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Uniformization for Sampling Realizations of Markov Processes: Applications to Bayesian Implementations of Codon Substitution Models

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Bioinformatics . 24 ( 1 ) : 56-62

DOI: 10.1093/bioinformatics/btm532

Journal article

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Etude des patrons d`évolution asymétrique dans les séquences d`ADN

A. Necşulea

incollection . -- : 476-482

Journal article

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Losing helena: The extinction of a drosophila line-like element

Rita Rebollo, Emmanuelle Lerat, Liliana Lopez Kleine, Christian Biémont, Cristina Vieira

BMC Genomics . 9 : 1-11

DOI: 10.1186/1471-2164-9-149

Journal article

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Sequence variability and phylogenetic analyses of the Complement Regulatory Protein expressed by the trypomastigote stage of Trypanosoma cruzi identify a monophyletic group of CRP-like proteins

Françoise Mathieu-Daudé, Bénédicte Lafay, Olivia Touzet, Marie-France Bosseno, Favio Parrado, Ana Maria Rojas...

Xth European Multicolloquium of Parasitology .

Conference paper

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Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

A. Studer, Simon Penel, L. Duret, M. Robinson-Rechavi

Genome Research . 18 : 1393-1402

Journal article

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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

L. Duret, Jean Cohen, Claire Jubin, Philippe Dessen, Jean-François Goût, Sylvain Mousset...

Genome Research . 18 ( 4 ) : 585-96

DOI: 10.1101/gr.074534.107

Journal article

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The Impact of Recombination on Nucleotide Substitutions in the Human Genome

L. Duret, P.F. Arndt

PLoS Genetics . 4 : 1-19

Journal article

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Neutral Theory: The Null Hypothesis of Molecular Evolution

L. Duret

Nature Education . 1 ( 1 ) : 803-806

Journal article

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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline

L. Duret, J. Cohen, C. Jubin, P. Dessen, J.-F. Gout, Sylvain Mousset...

Genome Research . 18 : 585-596

DOI: 10.1101/gr.074534.107

Journal article

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An introduction to metabolic networks and their structural analysis.

Vincent Lacroix, Ludovic Cottret, Patricia Thebault, Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 5 ( 4 ) : 594-617

DOI: 10.1109/TCBB.2008.79

Journal article

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Evolution des organismes bactériens

G. Beslon, Federica Calevro, H. Charles, J.M. Fayard, C. Knibbe, S. Genieys...

Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" . : 1-1

Conference paper

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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum

H. Charles, Federica Calevro, Stefano Colella, J.M. Fayard, G. Febvay, Yvan Rahbé...

Séminaire INRA AgroBI . : 1-1

Conference paper

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A multiple layer model to compare RNA secondary structures

Julien Allali, Marie-France Sagot

Software: Practice and Experience . 38 ( 8 ) : 775-792

DOI: 10.1002/spe.846

Journal article

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