GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 721 to 750 publications on 1403 in total

Pendant trois milliards d'années les micro-organismes sont les seuls habitants de la terre

J.C. Bertrand, Céline Brochier-Armanet, Manolo Gouy, F. Westall

incollection . 2-35311-022-3 9782353110223 : 94-U259

Book chapter

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NGS without a reference genome, comparison and visualisation of non assembled data

Vincent Lacroix

Statistical Methods for Post-Genomic Data (SMPGD) .

Conference paper

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Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Céline Brochier-Armanet, Philippe Deschamps, Purificación López-García, Yvan Zivanovic, Francisco Rodríguez-Valera, David Moreira

The International Society of Microbiologial Ecology Journal . 5 ( 8 ) : 1291-302

DOI: 10.1038/ismej.2011.16

Journal article

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A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System

S. Coumes-Florens, Céline Brochier-Armanet, A. Guiseppi, F. Denizot, M. Foglino

PLoS ONE . 6 : e15951

DOI: 10.1371/journal.pone.0015951

Journal article

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Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria

J. Luciano, R. Agrebi, A.V. Le Gall, M. Wartel, F. Fiegna, A. Ducret...

PLoS Genetics . 7 ( 9 ) : 1409-1418

DOI: 10.1371/journal.pgen.1002268

Journal article

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Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia

H. Trigui, Salma Masmoudi, Céline Brochier-Armanet, S. Maalej, S. Dukan

Int J Microbiol . -- : 347-58

Journal article

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Unsuspected Diversity of Arsenite-Oxidizing Bacteria Revealed by a Widespread Distribution of the aoxB Gene in Prokaryotes

A. Heinrich-Salmeron, A. Cordi, Céline Brochier-Armanet, D. Halter, C. Pagnout, E. Abbaszadeh-Fard...

Applied and Environmental Microbiology . 77 : 4685-92

DOI: 10.1128/AEM.02884-10

Journal article

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On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.

Elie Desmond-Le Quéméner, Celine Brochier-Armanet, Patrick Forterre, Simonetta Gribaldo

Research in Microbiology . 162 ( 1 ) : 53-70

DOI: 10.1016/j.resmic.2010.10.004

Journal article

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A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120

C. Boileau, L. Eme, Céline Brochier-Armanet, A. Janicki, C-C. Zhang, A. Latifi

New Phytologist . 191 : 1108-1118

DOI: 10.1111/j.1469-8137.2011.03774.x

Journal article

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Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien, Anette Rasmussen, Simon Rose, Céline Brochier-Armanet, Clotilde Husson, Dominique Fourmy...

RNA . 17 ( 1 ) : 45-53

DOI: 10.1261/rna.2323411

Journal article

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Characteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3As(T) sp. nov.

D. Slyemi, D. Moinier, Céline Brochier-Armanet, V. Bonnefoy, D. B. Johnson

Archives of Microbiology . 193 : 439-449

DOI: 10.1007/s00203-011-0684-y

Journal article

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Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways

A. Amouric, Céline Brochier-Armanet, D. B. Johnson, V. Bonnefoy, K. B. Hallberg

Microbiology . 155 : 111-122

DOI: 10.1099/mic.0.044537-0

Journal article

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An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales

C. Le Fourn, G. Brasseur, Céline Brochier-Armanet, L. Pieulle, A. Brioukhanov, B. Ollivier...

Environmental Microbiology . 13 : 2132-45

DOI: 10.1111/j.1462-2920.2011.02439.x

Journal article

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Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes.

Emmanuelle Lerat, Nelly Burlet, Christian Biémont, Cristina Vieira

Gene . 473 ( 2 ) : 100-9

DOI: 10.1016/j.gene.2010.11.009

Journal article

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Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis

Hana Trigui, Salma Masmoudi, Céline Brochier-Armanet, Aude Barani, Gérald Grégori, Michel Denis...

Extremophiles . 15 : 347-358

DOI: 10.1007/s00792-011-0364-5

Journal article

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Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.

Sylvie Auxilien, Anette Rasmussen, Simon Rose, Céline Brochier-Armanet, Clotilde Husson, Dominique Fourmy...

RNA . 17 ( 1 ) : 45-53

DOI: 10.1261/rna.2323411

Journal article

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Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc”

Patrice Baa-Puyoulet, Augusto Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Toni Gabaldon, Marie-France Sagot...

Rencontres bioinformaticiens et statisticiens de l’INRA . : 1 p.

Poster

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Comparative high-throughput transcriptome sequencing and development of SiESTa, the \textitSilene EST annotation database

N. Blavet, D. Charif, C. Oger-Desfeux, Gabriel Marais, A. Widmer

BMC Genomics . 12 : 1-11

DOI: 10.1186/1471-2164-12-376

Journal article

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Absence of a core metabolic network common to symbiotic bacteria

Cecilia Coimbra Klein, Ludovic Cottret, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix...

6. Meeting GDRE-RA Comparative genomics . : 33 diapositives

Conference paper

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CycADS: an annotation database system to ease the development and update of BioCyc databases.

Augusto F Vellozo, Amélie S Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas, Ludovic Cottret, Gérard Febvay...

Database - The journal of Biological Databases and Curation . 2011 : bar008

DOI: 10.1093/database/bar008

Journal article

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Bacterial syntenies: an exact approach with gene quorum.

Yves-Pol Deniélou, Marie-France Sagot, Frédéric Boyer, Alain Viari

BMC Bioinformatics . 12 : 193

DOI: 10.1186/1471-2105-12-193

Journal article

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BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks

Stéphanie Rialle, Liza Felicori, Camila Dias-Lopes, Sabine Peres, Sanaâ El Atia, Alain Thierry...

Bioinformatics . 26 ( 18 ) : 2298-2304

DOI: 10.1093/bioinformatics/btq409

Journal article

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Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actions

Sabine Peres, Liza Felicori, Stéphanie Rialle, Elodie Jobard, Franck Molina

Bioinformatics . 26 ( 12 ) : 1542-1547

DOI: 10.1093/bioinformatics/btq169

Journal article

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An efficient method to find potentially universal population genetic markers applied to metazoans

A. Chenuil, Thierry B. Hoareau, E. Egea, G. Penant, C. Rocher, D. Aurelle...

BMC Evolutionary Biology . 10 ( 276 ) : 1-17

DOI: 10.1186/1471-2148-10-276

Journal article

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Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia

Cesare de Filippo, Patricia Heyn, Lawrence Barham, Mark Stoneking, Brigitte Pakendorf

American Journal of Physical Anthropology . 141 ( 3 ) : 382-394

DOI: 10.1002/ajpa.21155

Journal article

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Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes

Carina Mugal, J. Wolf, H. von Grünberg, H. Ellegren

Genome Biology and Evolution . 2 : 19-28

DOI: 10.1093/gbe/evp056

Journal article

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Molecular evolution of genes in avian genomes

Ki Woong Nam, Carina Mugal, Benoit Nabholz, Holger Schielzeth, Jochen B W Wolf, Niclas Backström...

Genome Biology . 11 ( 6 ) : 17 p.

DOI: 10.1186/gb-2010-11-6-r68

Journal article

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Phylogénie moléculaire

Samuel Blanquart, Alexis Criscuolo, Christophe J Douady, Emmanuel Douzery, Nicolas Lartillot, Herve Philippe...

Biologie évolutive . 9782804101619

Book chapter

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Towards a multi-scale and formalized representation of protein sequence-structure-function relationships : the nsLTP family as a case of study

Cécile Fleury, Marie Francoise M. F. Gautier, Pierre Larmande, Sabine Pérès, Frédéric F. de Lamotte, Franck Molina...

JOBIM2010 .

Conference paper

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