
Publications
Display of 1 to 30 publications on 33 in total
A Codon Model for Associating Phenotypic Traits with Altered Selective Patterns of Sequence Evolution
Systematic Biology . 70 ( 3 ) : 608-622
Journal article
see the publicationAncestral Genome Organization as a Diagnosis Tool for Phylogenomics
Phylogenetics in the Genomic Era . : 2.5:1--2.5:19
Book chapter
see the publicationTreerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Bioinformatics . 36 ( 18 ) : 4822-4824
Journal article
see the publicationDGINN, an automated and highly-flexible pipeline for the detection of genetic innovations on protein-coding genes
Nucleic Acids Research . 48 ( 18 ) : e103-e103
DOI: 10.1093/nar/gkaa680
Journal article
see the publicationGC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Genome Biology . 20 ( 1 )
Journal article
see the publicationDetecting adaptive convergent amino acid evolution
Philosophical Transactions of the Royal Society B: Biological Sciences . 374 ( 1777 ) : 1-11
Journal article
see the publicationUnbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition
Molecular Biology and Evolution . 35 ( 3 ) : 734-742
Journal article
see the publicationLife History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Molecular Biology and Evolution . 35 ( 12 ) : 2900-2912
Journal article
see the publicationTranscriptomic signatures shaped by cell proportions shed light on comparative developmental biology
Genome Biology . 18 : 29
Journal article
see the publicationAncestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Genome Biology and Evolution . 9 ( 12 ) : 3413 - 3431
DOI: 10.1093/gbe/evx255
Journal article
see the publicationLess effective selection leads to larger genomes
Genome Research . 27 : 1016-1028
Journal article
see the publicationSENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage
Genome Biology and Evolution . 8 : 2427-41
DOI: 10.1093/gbe/evw165
Journal article
see the publicationBreaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation
Genome Biology and Evolution . 8 ( 5 ) : 1427-1439
DOI: 10.1093/gbe/evw083
Journal article
see the publicationEfficient gene tree correction guided by genome evolution
PLoS ONE . 11 ( 8 ) : e0159559 (22 pages)
Journal article
see the publicationMoments of genome evolution by Double Cut-and-Join
BMC Bioinformatics . 16 ( Suppl 14 ) : S7
Journal article
see the publicationProbabilistic modeling of the evolution of gene synteny within reconciled phylogenies
BMC Bioinformatics . 16 ( Suppl 14 ) : S5
Journal article
see the publicationDuplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later
Models and Algorithms for Genome Evolution . 19 : 47-62
Book chapter
see the publicationBio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution
Molecular Biology and Evolution . 30 ( 8 ) : 1745 - 1750
Journal article
see the publicationAccurate Estimation of Substitution Rates with Neighbor-Dependent Models in a Phylogenetic Context
Systematic Biology . 61 ( 3 ) : 510-521
Journal article
see the publicationLa notion d'espèce en écologie microbienne
1er Colloque National d'Ecologie Scientifique .
Conference paper
see the publicationToward an ecological concept for bacterial species in Agrobacterium
12th International Conference on Plant Pathogenic Bacteria .
Conference paper
see the publicationIdentification de fonctions « spécifiques d'espèce » impliquées dans l'individualisation en écovar de l’espèce G8 du complexe Agrobacterium tumefaciens
Journées des Microbiologistes de l'INRA .
Conference paper
see the publicationComputing the likelihood of sequence segmentation under Markov modelling
Preprint
see the publicationA Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies
Evolutionary Bioinformatics . 5 : 67-79
DOI: 10.4137/EBO.S2242
Journal article
see the publicationThe heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome
Gene . 411 : 87-93
Journal article
see the publicationAccounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria
BMC Evolutionary Biology . 8 : 272-272
Journal article
see the publicationDémasquage des gènes spécifiques d'une espèce génomique du complexeAgrobacterium tumefaciens par AFLP et multicapteur à ADN
7. Colloque national du Bureau des Ressources Génétiques . 7
Conference paper
see the publicationHorizontal Gene Transfer Regulation in Bacteria as a ‘‘Spandrel'' of DNA Repair Mechanisms
PLoS ONE . 2 ( 10 ) : e1055-e1066
Journal article
see the publicationMareyMap: an R-based tool with graphical interface for estimating recombination rates
Bioinformatics . 23 : 2188-2189
Journal article
see the publicationA Markovian Approach for the Analysis of the Gene Structure
Prague stringology conference . 19 ( 1 ) : 19-35
Conference paper
see the publication