GECO Génomique Computationnelle et Evolutive

Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

S. Charles-Bajard, Jean-Pierre Flandrois, R. Tomassone

Revue de Statistique Appliquée . LI : 59-71

2003

Article dans une revue

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MgtC as a horizontally-acquired virulence factor of intracellular bacterial pathogens: evidence from molecular phylogeny and comparative genomics.

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

Journal of Molecular Evolution . 57 ( 4 ) : 479-86

DOI: 10.1007/s00239-003-2496-4

2003

Article dans une revue

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

Emmanuelle Lerat, Vincent Daubin, Nancy Moran

PLoS Biology . 1 ( 1 ) : 101-109

DOI: 10.1371/journal.pbio.0000019

2003

Article dans une revue

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Sequence divergence within transposable element families in the Drosophila melanogaster genome

E. Lerat, C. Rizzon, C. Biémont

Genome Research . 13 : 1889-1896

2003

Article dans une revue

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Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere, C. Combet, Simon Penel, Christophe Blanchet, J. Thioulouse, C. Geourjon...

Nucleic Acids Research . 31 ( 13 ) : 3393-3399

DOI: 10.1093/nar/gkg530

2003

Article dans une revue

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Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Carène Rizzon, Edwige Martin, Gabriel Marais, Laurent Duret, Laurent Ségalat, Christian Biémont

Genetics . 165 ( 3 ) : 1127-35

2003

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ROSO: a software to search optimized oligonucleotide probes for microarrays

Nancie Reymond, Hubert Charles, Guillaume Beslon, Laurent Duret, Jean-Michel Fayard

14. Rencontres Régionales de la Recherche .

2003

Poster

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Jean-Pierre Rouault, Olga Assossou, Franã§oise Besson, Florence Persat, Christine Brisson, Laurent Duret...

FEMS Microbiology Letters . 224 ( 2 ) : 161-168

DOI: 10.1016/S0378-1097(03)00479-8

2003

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

O. Assossou, F. Besson, J.P. Rouault, F. Persat, C. Brisson, L. Duret...

FEMS Microbiology Letters . 224 : 161-168.

DOI: 10.1016/S0378-1097(03)00479-8

2003

Article dans une revue

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Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

C. Rizzon, E. Martin, G. Marais, L. Duret, L. Segalat, C. Biemont

Genetics . ( 165 ) : 1127-1135

2003

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Orphan gene finding - An exon assembly approach

Philippe Blayo, Pierre Rouzé, Marie-France Sagot

Theoretical Computer Science . 290 ( 1 ) : 1407-1431

2003

Article dans une revue

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Pattern inference under many guises

M.-F. Sagot, Y. Wakabayashi

incollection . -- : 245-288

2003

Article dans une revue

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Use of Correspondence Discriminant Analysis to predict the subcellular location of bacterial proteins

G. Perrière, J. Thioulouse

Computer Methods and Programs in Biomedicine . 70 : 99-105

2003

Article dans une revue

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Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

A.C. Culhane, G. Perrière, D.G. Higgins

BMC Bioinformatics . 4 : 1-15

2003

Article dans une revue

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BIBI a bioinformatics bacterial identification tool

G. Devulder, G. Perrière, F. Baty, Jean-Pierre Flandrois

Journal of Clinical Microbiology . 41 : 1785-1787

2003

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RTKdb: database of Receptor Tyrosine Kinase.

Julien Grassot, Guy Mouchiroud, Guy Perrière

Nucleic Acids Research . 31 ( 1 ) : 353-8

2003

Article dans une revue

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A method to study the microscale 3-D spatial distribution of Bacteria in soil.

A. Dechesne, C. Pallud, D. Debouzie, Jean-Pierre Flandrois, J.P. Gaudet, G.L. Grundmann

Mycological Research . 107 : 1221-1230

2003

Article dans une revue

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Phylogenetic analysis of proteins homologous to the Salmonella MgtC virulence factor

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

ASM Conference on Salmonella: Pathogenesis, Epidemiology, and Vaccine Development .

2003

Acte de congrès

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A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

A. Dechesne, C. Pallud, D. Debouzie, J. P. Flandrois, T. M. Vogel, J. P. Gaudet...

Soil Biology and Biochemistry . 35 ( 12 ) : 1537-1546

DOI: 10.1016/S0038-0717(03)00243-8

2003

Article dans une revue

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Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Brigitte Pakendorf, Bharti Morar, Larissa A Tarskaia, Manfred Kayser, Himla Soodyall, Alexander Rodewald...

Human Genetics . 110 ( 2 ) : 198-200

DOI: 10.1007/s00439-001-0664-4

2002

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Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

G. Piganeau, Dominique Mouchiroud, L. Duret, Christian Gautier

Journal of Molecular Evolution . 54 : 129-133.

2002

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Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

L. Duret

Bioinformatics . 18 : S91-S91

2002

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Further thoughts on the syntenic distance between genomes

N. Pisanti, M.-F. Sagot

Algorithmica . 34 : 157-180

2002

Article dans une revue

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Gene finding in eukaryotes

C. Mathé, Thomas Schiex, Pierre Rouzé, Philippe Blayo, Marie-France Sagot

Cloning and expression technologies . : 27-43

2002

Chapitre d'ouvrage

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin, Manolo Gouy, G. Perrière

Genome Research . 12 : 1080-1090

DOI: 10.1101/gr.187002

2002

Article dans une revue

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Between-group analysis of microarray data

A.C. Culhane, G. Perrière, E.C. Considine, T.G. Cotter, D.G. Higgins

Bioinformatics . 18 : 1600-1608

2002

Article dans une revue

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Use and misuse of correspondence analysis in codon usage studies

G. Perrière, J. Thioulouse

Nucleic Acids Research . 30 : 4548-4555

2002

Article dans une revue

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Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

C. Rizzon, Gabriel Marais, Manolo Gouy, C. Biémont

Genome Research . 12 : 400-407

DOI: 10.1101/gr.210802

2002

Article dans une revue

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What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

B. Lamy, Pascal Roy, G. Carret, Jean-Pierre Flandrois, Marie Laure Delignette-Muller

Clinical Infectious Diseases . 35 ( 7 ) : 842-850

DOI: 10.1086/342383

2002

Article dans une revue

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Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths

Marie Cornu, Martin Kalmokoff, Jean-Pierre Flandrois

International Journal of Food Microbiology . 73 ( 2-3 ) : 261-274

DOI: 10.1016/S0168-1605(01)00658-4

2002

Article dans une revue

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GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

MgtC as a horizontally-acquired virulence factor of intracellular bacterial pathogens: evidence from molecular phylogeny and comparative genomics.

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

Sequence divergence within transposable element families in the Drosophila melanogaster genome

Integrated databanks access and sequence/structure analysis services at the PBIL.

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

ROSO: a software to search optimized oligonucleotide probes for microarrays

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Orphan gene finding - An exon assembly approach

Pattern inference under many guises

Use of Correspondence Discriminant Analysis to predict the subcellular location of bacterial proteins

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

BIBI a bioinformatics bacterial identification tool

RTKdb: database of Receptor Tyrosine Kinase.

A method to study the microscale 3-D spatial distribution of Bacteria in soil.

Phylogenetic analysis of proteins homologous to the Salmonella MgtC virulence factor

A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

Further thoughts on the syntenic distance between genomes

Gene finding in eukaryotes

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Between-group analysis of microarray data

Use and misuse of correspondence analysis in codon usage studies

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths