Pôles techniques

RiboDB database: a comprehensive resource for prokaryotic systematics

Frédéric Jauffrit, Simon Penel, Stéphane Delmotte, Carine Rey, Damien M de Vienne, Manolo Gouy...

Molecular Biology and Evolution . 33 ( 8 ) : 2170--2172

DOI: 10.1093/molbev/msw088

2016

Article dans une revue

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Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses

David Monnin, Natacha Kremer, C. Berny, Hélène Henri, Adeline Dumet, Yann Voituron...

Journal of Evolutionary Biology . 29 : 1211-1222

DOI: 10.1111/jeb.12863

2016

Article dans une revue

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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, Mathilde Boutigny...

Nucleic Acids Research .

DOI: 10.1093/nar/gkw655

2016

Article dans une revue

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The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Carlos Vargas-Chavez, Nicolas Parisot, Clément Goubert, Patrice Baa-Puyoulet, Severine Balmand, M. Boulesteix...

Journées Ouvertes Biologie Informatique Mathématiques (JOBIM) .

2016

Poster

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Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

Camille Sessegolo, Nelly Burlet, Annabelle A. Haudry

Biology Letters . 12 ( 8 )

DOI: 10.1098/rsbl.2016.0407

2016

Article dans une revue

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Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

Valèria Romero-Soriano, Nelly Burlet, Doris Vela, Antonio Fontdevila, Cristina Vieira, Maria Pilar Garciá Guerreiro

Genome Biology and Evolution . 8 ( 3 ) : 556-561

DOI: 10.1093/gbe/evw024

2016

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Is genome size of Lepidoptera linked to host plant range?

P. A. Calatayud, C. Petit, N. Burlet, S. Dupas, N. Glaser, C. Capdevielle-Dulac...

Entomologia Experimentalis et Applicata . 159 ( 3 ) : 354-361

DOI: 10.1111/eea.12446

2016

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No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Clémentine François, L. Duret, Laurent Simon, Florian Mermillod-Blondin, Florian Malard, Lara Konecny-Dupré...

Molecular Biology and Evolution . 33 ( 10 ) : 2605–2620

DOI: 10.1093/molbev/msw131

2016

Article dans une revue

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Beneficial effects of group size on oxidative balance in a wild cooperative breeder

Sophie Lardy, Benjamin Rey, Karine Salin, Yann Voituron, Aurélie Cohas

Behavioral Ecology . 27 ( 6 ) : 1820–1825

DOI: 10.1093/beheco/arw114

2016

Article dans une revue

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Variation in the link between oxygen consumption and ATP production, and its relevance for animal performance

Karine Salin, S. K. Auer, B. Rey, C. Selman, N. B. Metcalfe

Proceedings of the Royal Society B: Biological Sciences . 282 : 14-22

DOI: 10.1098/rspb.2015.1028

2015

Article dans une revue

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L'enseignement et la formation au logiciel R : un retour d'expérience

Julien Barnier

Séminaire "R à l'usage des sciences sociales" (RUSS) .

2015

Acte de congrès

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RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Amandine Chatagnon, Philippe Veber, Valérie Morin, Justin Bedő,, Gérard Triqueneaux, Marie Sémon...

Nucleic Acids Research . 43 ( 10 ) : 4833--4854

DOI: 10.1093/nar/gkv370

2015

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Two Host Clades, Two Bacterial Arsenals: Evolution through Gene Losses in Facultative Endosymbionts.

Pierre-Antoine Rollat-Farnier, Diego Santos-Garcia, Qiong Rao, Marie-France Sagot, Francisco J Silva, Hélène Henri...

Genome Biology and Evolution . 7 ( 3 ) : 839-855

DOI: 10.1093/gbe/evv030

2015

Article dans une revue

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Oxidative phosphorylation efficiency, proton conductance and reactive oxygen species production of liver mitochondria correlates with body mass in frogs

Damien Roussel, Karine Salin, Adeline Dumet, Caroline Romestaing, Benjamin Rey, Yann Voituron

Journal of Experimental Biology . 218 : 3222-3228

DOI: 10.1242/jeb.126086

2015

Article dans une revue

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Detection of genetically isolated entities within the Mediterranean species of Bemisia tabaci: new insights into the systematics of this worldwide pest

Laurence Mouton, Olivier Gnankiné, Hélène Henri, Gabriel Terraz, Guillaume Ketoh, Thibaud Martin...

Pest Management Science . 71 ( 3 ) : 452-458

DOI: 10.1002/ps.3834

2015

Article dans une revue

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Optimization of multiplexed RADseq libraries using low-cost adaptors

Hélène Henri, Marie Cariou, Gabriel Terraz, Sonia Martinez, Adil El Filali, Marine Veyssière...

Genetica . 143 ( 2 ) : 139-143

DOI: 10.1007/s10709-015-9828-3

2015

Article dans une revue

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Revisiting the link between breeding effort and oxidative balance through field evaluation of two sympatric sibling insect species

Benjamin Rey, Pierre-François Pélisson, Marie-Claude Bel-Venner, Yann Voituron, Samuel Venner

Evolution - International Journal of Organic Evolution . 69 ( 3 ) : 815–822

DOI: 10.1111/evo.12586

2015

Article dans une revue

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Estimating resting metabolic rate by biologging core and subcutaneous temperature in a mammal

Benjamin Rey, Lewis G Halsey, Robin Hetem, Andrea Fuller, Duncan Mitchell, Jean-Louis Rouanet

Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology . 183 : 72–77

DOI: 10.1016/j.cbpa.2015.01.012

2015

Article dans une revue

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Unknown age in health disorders: A method to account for its cumulative effect and an application to feline viruses interactions.

Eléonore Hellard, Dominique Pontier, Aurélie Siberchicot, Frank Sauvage, David Fouchet

Epidemics . 11 : 48-55

DOI: 10.1016/j.epidem.2015.02.004

2015

Article dans une revue

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Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

Pascaline Dumas, Fabrice Legeai, Claire Lemaitre, Erwan Scaon, Marion Orsucci, Karine Labadie...

Genetica . 143 ( 3 ) : 305-316

DOI: 10.1007/s10709-015-9829-2

2015

Article dans une revue

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Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital

Nicolas Voirin, Cécile Payet, Alain Barrat, Ciro Cattuto, Nagham Khanafer, Corinne Régis...

Infection Control and Hospital Epidemiology . 36 ( 3 ) : 254

DOI: 10.1017/ice.2014.53

2015

Article dans une revue

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Routes of transmission during a nosocomial influenza A(H3N2) outbreak among geriatric patients and healthcare workers

D. Eibach, J. S. Casalegno, M. Bouscambert, Thomas Benet, C. Regis, B. Comte...

Journal of Hospital Infection . 86 : 188-193

DOI: 10.1016/j.jhin.2013.11.009

2014

Article dans une revue

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Five years of hospital based surveillance of influenza-like illness and influenza in a short-stay geriatric unit

Corinne Régis, Nicolas Voirin, Vanessa Escuret, Byeul-A Kim, Olivier Robert, Bruno Lina...

BMC Research Notes . 7 : 99

DOI: 10.1186/1756-0500-7-99

2014

Article dans une revue

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Detection of hospital outbreaks of influenza-like illness based on excess of incidence rates compared to the community

Philippe Vanhems, N. Voirin, T. Benet, S. Roche, V. Escuret, C. Regis...

American Journal of Infection Control . 42 : 1325-7

2014

Article dans une revue

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Générer des documents avec RMarkdown

Julien Barnier

Rencontre du groupe des utilisateurs de R sur Lyon .

2014

Acte de congrès

voir la publication

From bicycle sharing system movements to users: a typology of Vélo’v cyclists in Lyon based on large-scale behavioural dataset

Marie Vogel, Ronan Hamon, Guillaume Lozenguez, Luc Merchez, Patrice Abry, Julien Barnier...

Journal of Transport Geography . 41 : 280-291

DOI: 10.1016/j.jtrangeo.2014.07.005

2014

Article dans une revue

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Determining the instar of a weevil larva (Coleoptera: Curculionidae) using a parsimonious method

A. Merville, A. Vallier, Samuel Venner, A. Siberchicot, D. Fouchet, A. Heddi...

European Journal of Entomology . 111 ( 4 ) : 567-573

DOI: 10.14411/eje.2014.056

2014

Article dans une revue

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Host plant specialization matters in the epidemiology of Wolbachia across phytophagous wasps (Hymenoptera: Torymidae)

Thomas Boivin, Hélène Henri, Fabrice Vavre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

8. International Wolbachia Conference . : np

2014

Poster

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Host plant specialization influences the spread of endosymbiotic parthenogenesis in seed wasps (Hymenoptera: Torymidae)

Thomas Boivin, Hélène Henri, Fabrice Favre, Cindy Gidoin, Philippe Veber, Jean-Noël Candau...

IUFRO joint meeting: 7.03.06 "Integrated Management of Forest Defoliating Insects" and 7.03.01 "Cone and seed insects" .

2014

Acte de congrès

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Thyroid status affects membranes susceptibility to free radicals and oxidative balance in skeletal muscle of Muscovy ducklings (Cairina moschata)

Benjamin Rey, Caroline Romestaing, Jacques Bodennec, Adeline Dumet, Anaïs Fongy, Claude Duchamp...

Journal of Experimental Zoology . 321A : 415-421

DOI: 10.1002/jez.1872

2014

Article dans une revue

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Pôles techniques

Pôle informatique

Pôle biotechnologique

Pôle administratif

Entretien des locaux

Activités transverses

Publications

RiboDB database: a comprehensive resource for prokaryotic systematics

Influence of oxidative homeostasis on bacterial density and cost of infection in Drosophila–Wolbachia symbioses

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

Is genome size of Lepidoptera linked to host plant range?

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Beneficial effects of group size on oxidative balance in a wild cooperative breeder

Variation in the link between oxygen consumption and ATP production, and its relevance for animal performance

L'enseignement et la formation au logiciel R : un retour d'expérience

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements

Two Host Clades, Two Bacterial Arsenals: Evolution through Gene Losses in Facultative Endosymbionts.

Oxidative phosphorylation efficiency, proton conductance and reactive oxygen species production of liver mitochondria correlates with body mass in frogs

Detection of genetically isolated entities within the Mediterranean species of Bemisia tabaci: new insights into the systematics of this worldwide pest

Optimization of multiplexed RADseq libraries using low-cost adaptors

Revisiting the link between breeding effort and oxidative balance through field evaluation of two sympatric sibling insect species

Estimating resting metabolic rate by biologging core and subcutaneous temperature in a mammal

Unknown age in health disorders: A method to account for its cumulative effect and an application to feline viruses interactions.

Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

Combining High-Resolution Contact Data with Virological Data to Investigate Influenza Transmission in a Tertiary Care Hospital

Routes of transmission during a nosocomial influenza A(H3N2) outbreak among geriatric patients and healthcare workers

Five years of hospital based surveillance of influenza-like illness and influenza in a short-stay geriatric unit

Detection of hospital outbreaks of influenza-like illness based on excess of incidence rates compared to the community

Générer des documents avec RMarkdown

From bicycle sharing system movements to users: a typology of Vélo’v cyclists in Lyon based on large-scale behavioural dataset

Determining the instar of a weevil larva (Coleoptera: Curculionidae) using a parsimonious method

Host plant specialization matters in the epidemiology of Wolbachia across phytophagous wasps (Hymenoptera: Torymidae)

Host plant specialization influences the spread of endosymbiotic parthenogenesis in seed wasps (Hymenoptera: Torymidae)

Thyroid status affects membranes susceptibility to free radicals and oxidative balance in skeletal muscle of Muscovy ducklings (Cairina moschata)